mRNA_P-wetherbeei_contig1944.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig1944.1.1
Unique Name	mRNA_P-wetherbeei_contig1944.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig1944.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig1944.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig1944	contig	P-wetherbeei_contig1944:132..2743 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	2614
Hectar predicted targeting category	other localisation
Exons	1
Cds size	2610

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186172.3589287-CDS-P-wetherbeei_contig1944:133..2743	1683186172.3589287-CDS-P-wetherbeei_contig1944:133..2743	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig1944 134..2743 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig1944.1.1	prot_P-wetherbeei_contig1944.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig1944 134..2743 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig1944:132..2743-
coding sequence from alignment at P-wetherbeei_contig1944:132..2743-

protein sequence of mRNA_P-wetherbeei_contig1944.1.1

>prot_P-wetherbeei_contig1944.1.1 ID=prot_P-wetherbeei_contig1944.1.1|Name=mRNA_P-wetherbeei_contig1944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=870bp
TVPPSADARAAEVTEAAVGSAGNAADADAAAVPAAAAAATAVAVATPAAS
AAAAARDMALWCPPFAEVVGRPQYDRRVSAAFSQRYQRGLLRFDESGDVT
AVPPVPVPAAARTLSRTASNAFAGGAAAAAGGASPRMAAAGAAAAGGGKG
IASSYGGGSKEASSSAGDDDGGESARLARRKRRMALSEEGDSAAPAASAS
SSGRRRTSAPPAVSGGVGAAAGSGGTPDLRSTASGRARNGSSCGSNSGSS
RTGRSAGASAAGRGAGSGDGPSNGLRSRAVPETGRVTRASSNGERRGKEP
AAAPFTAAALFPPPPPARRSASGARFPRVSSSQAAAPAAAPRIAPAAHST
RPPAEAAREEPPALTAAASEAPSGAAAEPPIAEVAAVVAEVAAVEAASTL
AMPVAVAPAAPAAAAAVAREVLPVVPPHNTRGAMRRLAKTAPAGRDADNA
APRTHVGLHPPIHMVCAEDGGSSDDAAVTAAATGAAEGPPDSAATAAAAA
AAPGGARGGMRASGVAGMQLKHLQLLPLHGREVRCRPAGDPLAPWRGGCF
EGYFVRCHCCPGLFSAAAWAEHTGNRLHRPMQAIRVLAKGEMEATAAVPG
PDNDRARAAPSDGDASGPRDAAALELGALSPPGADSDPAASAAVAAATAP
APAAAADPAVAAVTADYAAAGAAAVADESAAVAAAAAVAAPLPPSAMTLQ
EAIEEEAGVLDNPAAVAALAAAQRAREVDWLAQGVTPVQAVDSRKRRPVL
APPAHRHGGPHETQQDAWQSQRRRSPSAGASRRVVTTSGVVAAASDGAAS
VGHCGDGAVTSGGGVDGGCDADGGSSAGGGGNGDGGRGVGGCSKKRRARP
EASPPSAAAQHMHGTRRASL

mRNA from alignment at P-wetherbeei_contig1944:132..2743-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig1944.1.1 ID=mRNA_P-wetherbeei_contig1944.1.1|Name=mRNA_P-wetherbeei_contig1944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2612bp|location=Sequence derived from alignment at P-wetherbeei_contig1944:132..2743- (Phaeothamnion wetherbeei SAG_119_79)
ACAGTGCCTCCTTCGGCGGACGCACGGGCGGCAGAGGTTACAGAGGCCGC
GGTAGGATCAGCAGGAAATGCGGCGGATGCGGATGCGGCAGCGGTACCGG
CGGCGGCAGCAGCGGCAACAGCGGTAGCGGTTGCTACACCGGCGGCGTCA
GCAGCGGCAGCGGCGCGGGACATGGCGCTGTGGTGTCCGCCCTTCGCAGA
GGTGGTCGGGCGGCCGCAGTATGACCGCCGCGTGAGCGCCGCCTTTTCCC
AGCGCTACCAGCGGGGGTTGCTGCGTTTCGATGAATCTGGCGACGTCACT
GCAGTCCCGCCGGTGCCGGTGCCCGCCGCCGCCCGCACGCTATCGCGAAC
CGCGTCGAACGCTTTTGCGGGCGGCGCCGCTGCCGCCGCGGGCGGCGCGA
GCCCCAGGATGGCAGCGGCCGGCGCTGCCGCGGCCGGCGGAGGCAAAGGC
ATTGCCAGCAGCTATGGCGGCGGCAGCAAAGAGGCTTCATCGTCCGCCGG
CGACGACGACGGCGGCGAGTCGGCGCGCCTCGCACGGCGCAAGCGCCGCA
TGGCCCTTTCGGAAGAAGGCGATAGCGCTGCCCCTGCGGCATCTGCGAGC
AGTAGCGGCCGGCGGCGCACTTCGGCTCCTCCAGCTGTTTCAGGCGGCGT
CGGTGCCGCTGCTGGTAGCGGTGGGACGCCGGATCTACGCAGCACCGCAT
CTGGCAGGGCTCGGAACGGCAGCAGCTGTGGCAGTAACAGCGGCAGCAGC
CGAACTGGTCGCAGTGCCGGGGCAAGTGCCGCCGGCCGCGGCGCCGGGAG
CGGGGACGGCCCCAGCAATGGGCTGCGGTCACGAGCGGTGCCGGAGACGG
GCCGCGTCACCCGCGCGAGCTCTAATGGAGAGCGGCGGGGCAAGGAGCCG
GCGGCGGCACCGTTTACAGCGGCGGCGCTGTTTCCGCCGCCTCCGCCAGC
ACGGCGATCGGCGTCGGGGGCCCGGTTTCCTCGCGTATCTTCGTCACAGG
CGGCTGCGCCCGCGGCAGCGCCGCGAATTGCTCCCGCTGCTCATTCGACG
CGTCCACCCGCTGAAGCCGCCCGGGAAGAGCCGCCGGCTCTGACCGCTGC
AGCCTCCGAAGCACCTTCGGGTGCTGCGGCGGAACCTCCGATCGCAGAGG
TGGCGGCGGTGGTGGCGGAAGTAGCAGCTGTTGAGGCTGCGTCAACTTTA
GCGATGCCGGTAGCGGTGGCGCCGGCAGCACCAGCGGCGGCGGCAGCAGT
GGCGCGAGAAGTGCTTCCAGTGGTGCCGCCACACAACACGCGAGGCGCGA
TGCGCCGGCTGGCAAAAACTGCGCCTGCCGGCAGGGATGCCGACAATGCC
GCTCCACGCACACACGTCGGCCTTCACCCGCCGATACACATGGTCTGTGC
TGAGGACGGCGGCAGTTCCGATGACGCCGCGGTGACCGCAGCGGCGACGG
GTGCGGCGGAGGGGCCTCCTGATTCTGCCGCCACGGCGGCGGCGGCGGCG
GCTGCGCCAGGGGGGGCGAGAGGGGGTATGCGGGCGAGCGGCGTGGCCGG
AATGCAGCTGAAGCACCTTCAGTTGCTGCCGCTGCACGGCCGCGAAGTGC
GCTGCCGCCCCGCCGGCGACCCTTTGGCGCCGTGGCGCGGTGGCTGCTTC
GAGGGCTACTTTGTCCGCTGCCACTGCTGCCCCGGCCTCTTTTCGGCAGC
GGCGTGGGCCGAGCATACCGGCAACCGCCTGCATCGCCCTATGCAGGCCA
TTCGAGTTCTGGCAAAGGGAGAGATGGAGGCGACGGCGGCGGTACCGGGC
CCTGACAACGACCGCGCCAGAGCGGCACCCAGTGACGGCGATGCGTCAGG
ACCGCGCGATGCAGCGGCTCTGGAACTTGGCGCCTTGTCGCCTCCCGGCG
CAGACTCTGATCCCGCTGCTTCGGCCGCCGTCGCTGCGGCCACTGCCCCC
GCCCCCGCCGCCGCTGCTGATCCTGCTGTCGCCGCTGTGACCGCGGATTA
TGCCGCTGCCGGTGCAGCCGCCGTCGCTGACGAATCCGCCGCCGTTGCTG
CCGCCGCTGCGGTGGCCGCGCCGTTGCCGCCGTCCGCCATGACGCTGCAG
GAGGCGATCGAGGAGGAGGCCGGCGTGCTTGACAACCCTGCGGCGGTGGC
GGCGCTGGCGGCGGCGCAGCGGGCGCGGGAGGTGGACTGGCTGGCGCAAG
GGGTGACGCCAGTGCAGGCTGTCGACAGCCGGAAGCGCCGGCCGGTGCTG
GCGCCGCCGGCGCACCGGCACGGGGGGCCGCACGAGACGCAGCAGGACGC
CTGGCAGTCGCAGCGGCGGCGCTCTCCCAGCGCCGGCGCCAGCCGACGAG
TCGTCACCACCAGCGGCGTGGTTGCTGCGGCGAGCGATGGCGCGGCTTCG
GTCGGGCACTGCGGCGATGGTGCTGTGACCAGTGGTGGCGGCGTTGACGG
CGGCTGCGATGCTGACGGTGGCAGCAGCGCTGGCGGCGGTGGCAACGGTG
ACGGCGGCAGGGGCGTTGGCGGCTGCAGCAAGAAGCGGCGGGCGCGTCCG
GAGGCTTCGCCGCCTTCTGCTGCTGCGCAGCACATGCACGGGACCCGGCG
AGCGTCGCTCCT

Coding sequence (CDS) from alignment at P-wetherbeei_contig1944:132..2743-

>mRNA_P-wetherbeei_contig1944.1.1 ID=mRNA_P-wetherbeei_contig1944.1.1|Name=mRNA_P-wetherbeei_contig1944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2610bp|location=Sequence derived from alignment at P-wetherbeei_contig1944:132..2743- (Phaeothamnion wetherbeei SAG_119_79)
ACAGTGCCTCCTTCGGCGGACGCACGGGCGGCAGAGGTTACAGAGGCCGC
GGTAGGATCAGCAGGAAATGCGGCGGATGCGGATGCGGCAGCGGTACCGG
CGGCGGCAGCAGCGGCAACAGCGGTAGCGGTTGCTACACCGGCGGCGTCA
GCAGCGGCAGCGGCGCGGGACATGGCGCTGTGGTGTCCGCCCTTCGCAGA
GGTGGTCGGGCGGCCGCAGTATGACCGCCGCGTGAGCGCCGCCTTTTCCC
AGCGCTACCAGCGGGGGTTGCTGCGTTTCGATGAATCTGGCGACGTCACT
GCAGTCCCGCCGGTGCCGGTGCCCGCCGCCGCCCGCACGCTATCGCGAAC
CGCGTCGAACGCTTTTGCGGGCGGCGCCGCTGCCGCCGCGGGCGGCGCGA
GCCCCAGGATGGCAGCGGCCGGCGCTGCCGCGGCCGGCGGAGGCAAAGGC
ATTGCCAGCAGCTATGGCGGCGGCAGCAAAGAGGCTTCATCGTCCGCCGG
CGACGACGACGGCGGCGAGTCGGCGCGCCTCGCACGGCGCAAGCGCCGCA
TGGCCCTTTCGGAAGAAGGCGATAGCGCTGCCCCTGCGGCATCTGCGAGC
AGTAGCGGCCGGCGGCGCACTTCGGCTCCTCCAGCTGTTTCAGGCGGCGT
CGGTGCCGCTGCTGGTAGCGGTGGGACGCCGGATCTACGCAGCACCGCAT
CTGGCAGGGCTCGGAACGGCAGCAGCTGTGGCAGTAACAGCGGCAGCAGC
CGAACTGGTCGCAGTGCCGGGGCAAGTGCCGCCGGCCGCGGCGCCGGGAG
CGGGGACGGCCCCAGCAATGGGCTGCGGTCACGAGCGGTGCCGGAGACGG
GCCGCGTCACCCGCGCGAGCTCTAATGGAGAGCGGCGGGGCAAGGAGCCG
GCGGCGGCACCGTTTACAGCGGCGGCGCTGTTTCCGCCGCCTCCGCCAGC
ACGGCGATCGGCGTCGGGGGCCCGGTTTCCTCGCGTATCTTCGTCACAGG
CGGCTGCGCCCGCGGCAGCGCCGCGAATTGCTCCCGCTGCTCATTCGACG
CGTCCACCCGCTGAAGCCGCCCGGGAAGAGCCGCCGGCTCTGACCGCTGC
AGCCTCCGAAGCACCTTCGGGTGCTGCGGCGGAACCTCCGATCGCAGAGG
TGGCGGCGGTGGTGGCGGAAGTAGCAGCTGTTGAGGCTGCGTCAACTTTA
GCGATGCCGGTAGCGGTGGCGCCGGCAGCACCAGCGGCGGCGGCAGCAGT
GGCGCGAGAAGTGCTTCCAGTGGTGCCGCCACACAACACGCGAGGCGCGA
TGCGCCGGCTGGCAAAAACTGCGCCTGCCGGCAGGGATGCCGACAATGCC
GCTCCACGCACACACGTCGGCCTTCACCCGCCGATACACATGGTCTGTGC
TGAGGACGGCGGCAGTTCCGATGACGCCGCGGTGACCGCAGCGGCGACGG
GTGCGGCGGAGGGGCCTCCTGATTCTGCCGCCACGGCGGCGGCGGCGGCG
GCTGCGCCAGGGGGGGCGAGAGGGGGTATGCGGGCGAGCGGCGTGGCCGG
AATGCAGCTGAAGCACCTTCAGTTGCTGCCGCTGCACGGCCGCGAAGTGC
GCTGCCGCCCCGCCGGCGACCCTTTGGCGCCGTGGCGCGGTGGCTGCTTC
GAGGGCTACTTTGTCCGCTGCCACTGCTGCCCCGGCCTCTTTTCGGCAGC
GGCGTGGGCCGAGCATACCGGCAACCGCCTGCATCGCCCTATGCAGGCCA
TTCGAGTTCTGGCAAAGGGAGAGATGGAGGCGACGGCGGCGGTACCGGGC
CCTGACAACGACCGCGCCAGAGCGGCACCCAGTGACGGCGATGCGTCAGG
ACCGCGCGATGCAGCGGCTCTGGAACTTGGCGCCTTGTCGCCTCCCGGCG
CAGACTCTGATCCCGCTGCTTCGGCCGCCGTCGCTGCGGCCACTGCCCCC
GCCCCCGCCGCCGCTGCTGATCCTGCTGTCGCCGCTGTGACCGCGGATTA
TGCCGCTGCCGGTGCAGCCGCCGTCGCTGACGAATCCGCCGCCGTTGCTG
CCGCCGCTGCGGTGGCCGCGCCGTTGCCGCCGTCCGCCATGACGCTGCAG
GAGGCGATCGAGGAGGAGGCCGGCGTGCTTGACAACCCTGCGGCGGTGGC
GGCGCTGGCGGCGGCGCAGCGGGCGCGGGAGGTGGACTGGCTGGCGCAAG
GGGTGACGCCAGTGCAGGCTGTCGACAGCCGGAAGCGCCGGCCGGTGCTG
GCGCCGCCGGCGCACCGGCACGGGGGGCCGCACGAGACGCAGCAGGACGC
CTGGCAGTCGCAGCGGCGGCGCTCTCCCAGCGCCGGCGCCAGCCGACGAG
TCGTCACCACCAGCGGCGTGGTTGCTGCGGCGAGCGATGGCGCGGCTTCG
GTCGGGCACTGCGGCGATGGTGCTGTGACCAGTGGTGGCGGCGTTGACGG
CGGCTGCGATGCTGACGGTGGCAGCAGCGCTGGCGGCGGTGGCAACGGTG
ACGGCGGCAGGGGCGTTGGCGGCTGCAGCAAGAAGCGGCGGGCGCGTCCG
GAGGCTTCGCCGCCTTCTGCTGCTGCGCAGCACATGCACGGGACCCGGCG
AGCGTCGCTC