mRNA_P-wetherbeei_contig19414.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19414.1.1
Unique NamemRNA_P-wetherbeei_contig19414.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19414.1.1 vs. uniprot
Match: E1ZLW4_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZLW4_CHLVA)

HSP 1 Score: 63.5 bits (153), Expect = 2.510e-9
Identity = 44/98 (44.90%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:    1 SIMEAPALRLLAPLVRRALRSGLDAPLAAAA---HITLGGVRDTYDLRDDLDMENSLTLYLYLVDPRGLVRWRASGAPAEGEVAALLRCTEELLLQEE 285
            +I+E   LR+  P  +  LRSG  A    A    H+   G  D   LR  L + N LT Y++LVD RG +RWR SG P+  E+  LLRCTEELL QE+
Sbjct:  189 AIVEGMVLRMW-PFKQLLLRSGAGAAAKYALPCRHLHHFG--DMQALRQALQLTNLLTGYVFLVDSRGRLRWRGSGNPSAQELQTLLRCTEELLAQEQ 283
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BLAST of mRNA_P-wetherbeei_contig19414.1.1 vs. uniprot
Match: A0A7S3D340_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D340_9EUKA)

HSP 1 Score: 56.6 bits (135), Expect = 6.460e-7
Identity = 32/90 (35.56%), Postives = 51/90 (56.67%), Query Frame = 1 
Query:    1 SIMEAPALRLLAPLVRRALRSGLDAPLAAAAHITLGGVRDTYDLRDDLDMENSLTLYLYLVDPRGLVRWRASGAPAEGEVAALLRCTEEL 270
            + ++ P L L++ L+R  +       L A+  +  G   ++   R +L MEN LT Y++LVD  G +RWRA GAPAE E+  L +  ++L
Sbjct:  162 TFLDGPLLGLMSGLLRATIAKNTPPELHASTFVVKG---NSGAARRELQMENRLTAYVWLVDKNGRIRWRAVGAPAEQELEGLHKLAKQL 248
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BLAST of mRNA_P-wetherbeei_contig19414.1.1 vs. uniprot
Match: A0A7S2QRX8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Norrisiella sphaerica TaxID=552664 RepID=A0A7S2QRX8_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 3.080e-6
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  133 RDDLDMENSLTLYLYLVDPRGLVRWRASGAPAEGEVAALLRCTEELLLQEEED 291
            R+ LDM N+LTLY +LVD RG +RWR+SG+P E E+  L +  +  LL EE D
Sbjct:   48 RERLDMINNLTLYGFLVDKRGSIRWRSSGSPGENEIDLLDKFAK--LLAEEVD 98
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19414.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
E1ZLW4_CHLVA2.510e-944.90Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A7S3D340_9EUKA6.460e-735.56Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
A0A7S2QRX8_9EUKA3.080e-652.83Hypothetical protein (Fragment) n=1 Tax=Norrisiell... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19414contigP-wetherbeei_contig19414:819..1214 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog554065.XP_005845435.1
PFAMsATP-synt_10
Model size396
Max annot lvl33090|Viridiplantae
KEGG koko:K18192
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.02e-09
EggNOG OGsKOG4614@1|root,KOG4614@2759|Eukaryota,37SKA@33090|Viridiplantae
DescriptionATP10 protein
Cds size390
COG categoryO
BRITEko00000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186171.6022415-CDS-P-wetherbeei_contig19414:818..12081683186171.6022415-CDS-P-wetherbeei_contig19414:818..1208Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19414 819..1208 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186171.6112669-UTR-P-wetherbeei_contig19414:1208..12141683186171.6112669-UTR-P-wetherbeei_contig19414:1208..1214Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19414 1209..1214 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19414.1.1prot_P-wetherbeei_contig19414.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19414 819..1208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19414.1.1

>prot_P-wetherbeei_contig19414.1.1 ID=prot_P-wetherbeei_contig19414.1.1|Name=mRNA_P-wetherbeei_contig19414.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MEAPALRLLAPLVRRALRSGLDAPLAAAAHITLGGVRDTYDLRDDLDMEN
SLTLYLYLVDPRGLVRWRASGAPAEGEVAALLRCTEELLLQEEEDGGTTV
GDAAVAVEAGAAAGEAAAAVEAEAAAAEGP
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mRNA from alignment at P-wetherbeei_contig19414:819..1214-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19414.1.1 ID=mRNA_P-wetherbeei_contig19414.1.1|Name=mRNA_P-wetherbeei_contig19414.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig19414:819..1214- (Phaeothamnion wetherbeei SAG_119_79)
TCCATCATGGAGGCGCCGGCCCTCCGCCTGCTGGCGCCGCTTGTCCGCCG
CGCACTGCGCTCGGGCCTCGACGCGCCGCTGGCGGCGGCCGCCCACATCA
CGCTCGGCGGCGTCCGCGACACATACGATTTGCGAGATGATTTAGACATG
GAGAATTCCTTGACGCTGTACCTTTACCTGGTGGACCCGCGGGGACTGGT
GCGGTGGCGGGCGAGCGGGGCGCCTGCAGAGGGCGAGGTGGCGGCGCTGC
TGCGGTGCACGGAGGAGCTCTTGCTGCAAGAAGAGGAAGATGGTGGCACC
ACTGTCGGGGACGCGGCGGTGGCGGTGGAGGCAGGAGCGGCGGCCGGGGA
AGCAGCGGCGGCAGTGGAGGCGGAAGCGGCGGCGGCGGAGGGTCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19414:819..1214-

>mRNA_P-wetherbeei_contig19414.1.1 ID=mRNA_P-wetherbeei_contig19414.1.1|Name=mRNA_P-wetherbeei_contig19414.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig19414:819..1214- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGCGCCGGCCCTCCGCCTGCTGGCGCCGCTTGTCCGCCGCGCACT
GCGCTCGGGCCTCGACGCGCCGCTGGCGGCGGCCGCCCACATCACGCTCG
GCGGCGTCCGCGACACATACGATTTGCGAGATGATTTAGACATGGAGAAT
TCCTTGACGCTGTACCTTTACCTGGTGGACCCGCGGGGACTGGTGCGGTG
GCGGGCGAGCGGGGCGCCTGCAGAGGGCGAGGTGGCGGCGCTGCTGCGGT
GCACGGAGGAGCTCTTGCTGCAAGAAGAGGAAGATGGTGGCACCACTGTC
GGGGACGCGGCGGTGGCGGTGGAGGCAGGAGCGGCGGCCGGGGAAGCAGC
GGCGGCAGTGGAGGCGGAAGCGGCGGCGGCGGAGGGTCCG
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