mRNA_P-wetherbeei_contig19412.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19412.1.1
Unique NamemRNA_P-wetherbeei_contig19412.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19412.1.1 vs. uniprot
Match: UPI0019C3BD79 (Sigma-54-dependent Fis family transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI0019C3BD79)

HSP 1 Score: 705 bits (1820), Expect = 5.490e-253
Identity = 363/429 (84.62%), Postives = 391/429 (91.14%), Query Frame = 1
Query:    1 IEKMQGIRGDIPVIVQTAQGSIETVIKAMRAGADDFVVKPVSPERLKISIQNLLKVNALTEEVKRLNKKVGGSLSFGDLIASSPAMANVLRLGRRGAQSNIPILIEGESGVGKEMIARAIQGESERAGRPFVAVNCGAIPENLVESILFGHEKGSFTGATSRHSGKFLEADGGTLFLDEVAELPLDMQVKLLRAIQEGEIDPVGSRKSVKVNIRLISATNRNMIEMVKAGQFREDLYYRLNVYPMMVPPLRDRKDDIPALVEHFITRLSAEEGRKVRGITPNVLPMLQAYGWPGNVRQLENTIFRAIVLCESDVLEIQDFPQIASLVEGYEIIVPPAMPLAKKPAAPAGPAMTGGNQHVSRSAGHQVSDGMALGIPAVTDGGHIRKLEEVEADMIRLALNRYRGQMSEVARKLGIGRSTLYRKMRDLGL 1287
            +E++Q IRGD+PVIVQTAQGSIETVIKAMRAGADDFVVKP+SPERLK+SIQNLLKV ALTEEVKRLNKKVGG+L+F DLIA+SPAMANVLRLGRRGAQSNIPILIEGESGVGKEMIARAIQGESER G+PFVAVNCGAIPENLVESILFGHEKGSFTGAT +H GKF EADGGTLFLDEVAELP DMQVKLLRAIQEGEIDPVGSRKSVKVNIRL+SATNRNMIEMVK GQFREDLYYRLNVYP+MVPPLRDRK+DIPALV+HFITR +AEEGRKVRGI P+ L +L+ Y WPGNVRQLENT+FRAIVLCE D LEIQDFPQIA+LVEGYEI +P A     KP+ P G A   G   V+ SAG  VSDGMALGIP VT GGH+RKLEEVEADMIRLAL+RYRGQMSEVARKLGIGRSTLYRKM+D+GL
Sbjct:   68 LERLQAIRGDLPVIVQTAQGSIETVIKAMRAGADDFVVKPISPERLKVSIQNLLKVTALTEEVKRLNKKVGGALTFDDLIAASPAMANVLRLGRRGAQSNIPILIEGESGVGKEMIARAIQGESERLGKPFVAVNCGAIPENLVESILFGHEKGSFTGATGKHLGKFQEADGGTLFLDEVAELPFDMQVKLLRAIQEGEIDPVGSRKSVKVNIRLVSATNRNMIEMVKKGQFREDLYYRLNVYPIMVPPLRDRKEDIPALVDHFITRFAAEEGRKVRGIDPHALGLLRGYSWPGNVRQLENTVFRAIVLCEGDRLEIQDFPQIAALVEGYEITIPAAPLQPPKPSLPQGAAAIMGGTSVAPSAGAAVSDGMALGIPVVTGGGHMRKLEEVEADMIRLALHRYRGQMSEVARKLGIGRSTLYRKMKDMGL 496          
BLAST of mRNA_P-wetherbeei_contig19412.1.1 vs. uniprot
Match: A0A2W2BYR6_9HYPH (Sigma-54-dependent Fis family transcriptional regulator n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2BYR6_9HYPH)

HSP 1 Score: 699 bits (1805), Expect = 1.050e-250
Identity = 359/429 (83.68%), Postives = 392/429 (91.38%), Query Frame = 1
Query:    1 IEKMQGIRGDIPVIVQTAQGSIETVIKAMRAGADDFVVKPVSPERLKISIQNLLKVNALTEEVKRLNKKVGGSLSFGDLIASSPAMANVLRLGRRGAQSNIPILIEGESGVGKEMIARAIQGESERAGRPFVAVNCGAIPENLVESILFGHEKGSFTGATSRHSGKFLEADGGTLFLDEVAELPLDMQVKLLRAIQEGEIDPVGSRKSVKVNIRLISATNRNMIEMVKAGQFREDLYYRLNVYPMMVPPLRDRKDDIPALVEHFITRLSAEEGRKVRGITPNVLPMLQAYGWPGNVRQLENTIFRAIVLCESDVLEIQDFPQIASLVEGYEIIVPPAMPLAKKPAAPAGPAMTGGNQHVSRSAGHQVSDGMALGIPAVTDGGHIRKLEEVEADMIRLALNRYRGQMSEVARKLGIGRSTLYRKMRDLGL 1287
            +E+MQ IRGD+PVIVQTAQGSIETVIKAMRAGADDFVVKPVSPERLK S+QNLLKVNALTEEVKRLNKKVGG+LSF DLIAS+PAMANVLRLGRRGAQS IPILIEGESGVGKEMIARAIQGES+RAGRPFVAVNCGAIPENLVESILFGHEKG+FTGAT RH GKF EADGGTLFLDEVAELPLDMQVKLLRAIQEGE+DPVG+R+ VKVNIRLISATNRNMIEMVKAGQFREDLYYRLNV+P+MVPPLRDRK+DIPALV+HF+TR +AEEGRKVRGITP  L +L+AY WPGNVRQLENT+FRA+VLCE   L+I+DFPQIASLVEGYEI +PPA  LA KPA P G A   G   + + +   V+DG+A GIP VT+GGHIRKLEEVEADMIRLAL RY+GQMSEVARKLGIGRSTLYR+M+DLGL
Sbjct:   68 LERMQAIRGDLPVIVQTAQGSIETVIKAMRAGADDFVVKPVSPERLKASVQNLLKVNALTEEVKRLNKKVGGALSFSDLIASAPAMANVLRLGRRGAQSTIPILIEGESGVGKEMIARAIQGESDRAGRPFVAVNCGAIPENLVESILFGHEKGAFTGATQRHMGKFQEADGGTLFLDEVAELPLDMQVKLLRAIQEGEVDPVGARRPVKVNIRLISATNRNMIEMVKAGQFREDLYYRLNVFPIMVPPLRDRKEDIPALVDHFVTRFAAEEGRKVRGITPEALGLLRAYSWPGNVRQLENTVFRAMVLCEGGRLDIEDFPQIASLVEGYEIRIPPAPQLAPKPALPQGAAAIAGGSPLPKGS-TAVADGVAFGIPVVTEGGHIRKLEEVEADMIRLALARYQGQMSEVARKLGIGRSTLYRRMKDLGL 495          
BLAST of mRNA_P-wetherbeei_contig19412.1.1 vs. uniprot
Match: A0A6G6WNW1_9HYPH (Sigma-54-dependent Fis family transcriptional regulator n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A6G6WNW1_9HYPH)

HSP 1 Score: 690 bits (1781), Expect = 4.230e-247
Identity = 358/431 (83.06%), Postives = 388/431 (90.02%), Query Frame = 1
Query:    1 IEKMQGIRGDIPVIVQTAQGSIETVIKAMRAGADDFVVKPVSPERLKISIQNLLKVNALTEEVKRLNKKVGGSLSFGDLIASSPAMANVLRLGRRGAQSNIPILIEGESGVGKEMIARAIQGESERAGRPFVAVNCGAIPENLVESILFGHEKGSFTGATSRHSGKFLEADGGTLFLDEVAELPLDMQVKLLRAIQEGEIDPVGSRKSVKVNIRLISATNRNMIEMVKAGQFREDLYYRLNVYPMMVPPLRDRKDDIPALVEHFITRLSAEEGRKVRGITPNVLPMLQAYGWPGNVRQLENTIFRAIVLCESDVLEIQDFPQIASLVEGYEIIVP--PAMPLAKKPAAPAGPAMTGGNQHVSRSAGHQVSDGMALGIPAVTDGGHIRKLEEVEADMIRLALNRYRGQMSEVARKLGIGRSTLYRKMRDLGL 1287
            +E+M G+RG +PVIVQTAQGSIETVIKAMRAGADDFVVKP+SPERL++S+QNLLKVNALTEEVKRLNKKVGG+L+F DLIASS AMA V+RLGRRGAQSNIPILIEG+SGVGKE+IARAI GESER GR FVAVNCGAIPENLVESILFGHEKGSFTGAT++H GKF EADGGTLFLDEVAELPLDMQVKLLRAIQEGEIDPVG+RK +K+NIRLISATNRNMIEMVKAGQFREDLYYRLNV+P+MVPPL+DRKDDIPALV HFITR +AEEGRKV GI P  L MLQ Y WPGNVRQLENT+FRAIVLCE D+LEIQDFPQIASLVEGYE+ +P  PA P A    A AGP         SRS G  +SDGMA+GIPAVTDGGHIRKLEE+EADMIRLAL+RYRGQMSEVARKLGIGRSTLYRKMRDLGL
Sbjct:   68 LERMAGVRGHVPVIVQTAQGSIETVIKAMRAGADDFVVKPISPERLRVSVQNLLKVNALTEEVKRLNKKVGGALTFDDLIASSAAMAGVIRLGRRGAQSNIPILIEGQSGVGKEIIARAIHGESERRGRNFVAVNCGAIPENLVESILFGHEKGSFTGATAKHIGKFQEADGGTLFLDEVAELPLDMQVKLLRAIQEGEIDPVGARKPMKINIRLISATNRNMIEMVKAGQFREDLYYRLNVFPVMVPPLKDRKDDIPALVNHFITRFAAEEGRKVHGIDPQALAMLQLYSWPGNVRQLENTVFRAIVLCEGDILEIQDFPQIASLVEGYEVKIPELPATPAAAAXXA-AGP---------SRSTGSVISDGMAIGIPAVTDGGHIRKLEEIEADMIRLALHRYRGQMSEVARKLGIGRSTLYRKMRDLGL 488          
BLAST of mRNA_P-wetherbeei_contig19412.1.1 vs. uniprot
Match: UPI0018C834EA (sigma-54 dependent transcriptional regulator n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=UPI0018C834EA)

HSP 1 Score: 673 bits (1737), Expect = 1.510e-240
Identity = 346/429 (80.65%), Postives = 381/429 (88.81%), Query Frame = 1
Query:    1 IEKMQGIRGDIPVIVQTAQGSIETVIKAMRAGADDFVVKPVSPERLKISIQNLLKVNALTEEVKRLNKKVGGSLSFGDLIASSPAMANVLRLGRRGAQSNIPILIEGESGVGKEMIARAIQGESERAGRPFVAVNCGAIPENLVESILFGHEKGSFTGATSRHSGKFLEADGGTLFLDEVAELPLDMQVKLLRAIQEGEIDPVGSRKSVKVNIRLISATNRNMIEMVKAGQFREDLYYRLNVYPMMVPPLRDRKDDIPALVEHFITRLSAEEGRKVRGITPNVLPMLQAYGWPGNVRQLENTIFRAIVLCESDVLEIQDFPQIASLVEGYEIIVPPAMPLAKKPAAPAGPAMTGGNQHVSRSAGHQVSDGMALGIPAVTDGGHIRKLEEVEADMIRLALNRYRGQMSEVARKLGIGRSTLYRKMRDLGL 1287
            +EK++ +RGD+PVIVQT+QGSIETVIKAMRAGADDFVVKPV+PERL++SIQNLLKVNALTEEVKRLNKKV G+L+F DL+ASSPAM NVLRLGRRGAQSNIPILIEGESGVGKEMIARAIQGES+RAG+PFVAVNCGAIP+NLVESILFGHEKGSFTGAT +H GKF EADGGTLFLDEVAELPLD+QVKLLRAIQEGEID VGSRK  KVNIRLISATN+NMIEMVKAGQFREDLYYRLNVYP+MVP LRDRKDDIPALV HFIT+LSAEEGRKV GIT   L MLQ Y WPGNVRQ+ENTIFRAIVLCE++VL++ DFPQIA+LVEGYE+ +P A    KKP              + R A  QVSDG A+G+  VT+GGHIR LEEVEADMI+LA++RYRGQMSEVARKLGIGRSTLYRKMRDLGL
Sbjct:   68 LEKLEAVRGDLPVIVQTSQGSIETVIKAMRAGADDFVVKPVAPERLRVSIQNLLKVNALTEEVKRLNKKVSGALTFDDLVASSPAMNNVLRLGRRGAQSNIPILIEGESGVGKEMIARAIQGESDRAGKPFVAVNCGAIPQNLVESILFGHEKGSFTGATGKHLGKFAEADGGTLFLDEVAELPLDIQVKLLRAIQEGEIDAVGSRKPTKVNIRLISATNKNMIEMVKAGQFREDLYYRLNVYPVMVPALRDRKDDIPALVNHFITKLSAEEGRKVHGITSQALAMLQLYAWPGNVRQIENTIFRAIVLCETEVLDVADFPQIAALVEGYEVKIPAAPAAVKKP-------------ELVRPANGQVSDGNAIGVSIVTEGGHIRTLEEVEADMIKLAMHRYRGQMSEVARKLGIGRSTLYRKMRDLGL 483          
BLAST of mRNA_P-wetherbeei_contig19412.1.1 vs. uniprot
Match: A0A7Y2FRH9_9HYPH (Sigma-54-dependent Fis family transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7Y2FRH9_9HYPH)

HSP 1 Score: 641 bits (1654), Expect = 4.450e-229
Identity = 332/411 (80.78%), Postives = 367/411 (89.29%), Query Frame = 1
Query:   58 GSIETVIKAMRAGADDFVVKPVSPERLKISIQNLLKVNALTEEVKRLNKKVGGSLSFGDLIASSPAMANVLRLGRRGAQSNIPILIEGESGVGKEMIARAIQGESERAGRPFVAVNCGAIPENLVESILFGHEKGSFTGATSRHSGKFLEADGGTLFLDEVAELPLDMQVKLLRAIQEGEIDPVGSRKSVKVNIRLISATNRNMIEMVKAGQFREDLYYRLNVYPMMVPPLRDRKDDIPALVEHFITRLSAEEGRKVRGITPNVLPMLQAYGWPGNVRQLENTIFRAIVLCESDVLEIQDFPQIASLVEGYEIIVPPAMPLAKKPAAPAG-PAMTGGNQHVSRSAGHQVSDGMALGIPAVTDGGHIRKLEEVEADMIRLALNRYRGQMSEVARKLGIGRSTLYRKMRDLGL 1287
            GSIETVIKAMRAGA DFVVKPVSPERLK+SIQNLLKVNALTEEVKRLNKKVGG+L+F DLIA+S  M NV++LGRRGAQSNIPILIEGESGVGKEM+ARA+QGES+R+G+PFVAVNCGAIPENLVES LFGHEKGSFTGAT++H GKF EADGGTLFLDEVAELPL+MQVKLLRAIQEGE+DPVGSRK VKVNIRLISATNR+MIEMVK GQFREDLYYRLNV+P+MVPPLR+R DDI  LVEHFITR +AEEGRKVRGIT     ML  Y WPGNVRQLENT+FRAIVLCE DVL + DFPQIA+LV+GYE+ +P A     K   P+G  A+ G +    +SAG +VSDGMALGIPAVTDGGHIR+L++VEADMIRLALNRYRGQMS+VARKLGIGRSTLYRKMRDLGL
Sbjct:    1 GSIETVIKAMRAGAGDFVVKPVSPERLKVSIQNLLKVNALTEEVKRLNKKVGGALTFDDLIAASAGMTNVIKLGRRGAQSNIPILIEGESGVGKEMVARAMQGESDRSGKPFVAVNCGAIPENLVESTLFGHEKGSFTGATAKHIGKFQEADGGTLFLDEVAELPLEMQVKLLRAIQEGEVDPVGSRKPVKVNIRLISATNRDMIEMVKQGQFREDLYYRLNVFPVMVPPLRERTDDIAGLVEHFITRFAAEEGRKVRGITRQAAEMLTKYQWPGNVRQLENTVFRAIVLCEGDVLTVDDFPQIAALVDGYEVSIPAAPVQEAKDNLPSGHDAIIGIDNIPVQSAGAEVSDGMALGIPAVTDGGHIRRLDDVEADMIRLALNRYRGQMSQVARKLGIGRSTLYRKMRDLGL 411          
BLAST of mRNA_P-wetherbeei_contig19412.1.1 vs. uniprot
Match: A0A848Y6V8_9HYPH (Sigma-54-dependent Fis family transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A848Y6V8_9HYPH)

HSP 1 Score: 633 bits (1632), Expect = 2.700e-224
Identity = 328/426 (77.00%), Postives = 366/426 (85.92%), Query Frame = 1
Query:   10 MQGIRGDIPVIVQTAQGSIETVIKAMRAGADDFVVKPVSPERLKISIQNLLKVNALTEEVKRLNKKVGGSLSFGDLIASSPAMANVLRLGRRGAQSNIPILIEGESGVGKEMIARAIQGESERAGRPFVAVNCGAIPENLVESILFGHEKGSFTGATSRHSGKFLEADGGTLFLDEVAELPLDMQVKLLRAIQEGEIDPVGSRKSVKVNIRLISATNRNMIEMVKAGQFREDLYYRLNVYPMMVPPLRDRKDDIPALVEHFITRLSAEEGRKVRGITPNVLPMLQAYGWPGNVRQLENTIFRAIVLCESDVLEIQDFPQIASLVEGYEIIVPPAMPLAKKPAAPAGPAMTGGNQHVSRSAGHQVSDGMALGIPAVTDGGHIRKLEEVEADMIRLALNRYRGQMSEVARKLGIGRSTLYRKMRDLGL 1287
            M+     IPVIVQTAQGSIETV+KAMRAGADDFVVKPVSPERLK+S+QNLLKVNALT EVKRL KK  G L+F DLIASSPAMANV+ LGRR AQSNIPILIEGESGVGKE+IARAIQGESER GRP + VNCGAIPENLVESILFGHEKGSFTGATS+H GKF EA GGTLFLDEV ELPLDMQVKLLRAIQEGEIDPVGS++ V+V+IRLISATNRNMI+MVK GQFREDLYYRLNV+P+MVPPLR+R +D+  LVEHF+TR +AEEGRK+RGI P+   MLQ Y WPGNVRQLENT+FRA+VLC+SD L I DFPQIA+LV+G+E  VP A P+A  P      AM GG+   + S    VSDG+  GIPAVT+GGHIR+LE+VE DMIRLAL+RYRG MSEVARKLGIGRSTLYRK+RDLGL
Sbjct:   71 MEKKSSSIPVIVQTAQGSIETVVKAMRAGADDFVVKPVSPERLKVSLQNLLKVNALTTEVKRLQKKAEGVLTFDDLIASSPAMANVMHLGRRAAQSNIPILIEGESGVGKEVIARAIQGESERRGRPLITVNCGAIPENLVESILFGHEKGSFTGATSKHIGKFQEASGGTLFLDEVGELPLDMQVKLLRAIQEGEIDPVGSKRPVQVDIRLISATNRNMIDMVKEGQFREDLYYRLNVFPIMVPPLRERPEDMTNLVEHFVTRFAAEEGRKIRGIHPDAAAMLQQYEWPGNVRQLENTVFRAVVLCDSDFLTISDFPQIAALVDGFEAEVP-AAPVAPAPVESNVSAMIGGDLPQTHSTAGMVSDGVGYGIPAVTEGGHIRRLEDVEGDMIRLALDRYRGHMSEVARKLGIGRSTLYRKVRDLGL 495          
BLAST of mRNA_P-wetherbeei_contig19412.1.1 vs. uniprot
Match: A0A7V2SQ17_9HYPH (Sigma-54-dependent Fis family transcriptional regulator n=2 Tax=root TaxID=1 RepID=A0A7V2SQ17_9HYPH)

HSP 1 Score: 629 bits (1622), Expect = 6.710e-223
Identity = 328/430 (76.28%), Postives = 369/430 (85.81%), Query Frame = 1
Query:    1 IEKMQGIRGDIPVIVQTAQGSIETVIKAMRAGADDFVVKPVSPERLKISIQNLLKVNALTEEVKRLNKKVGGSLSFGDLIASSPAMANVLRLGRRGAQSNIPILIEGESGVGKEMIARAIQGESERAGRPFVAVNCGAIPENLVESILFGHEKGSFTGATSRHSGKFLEADGGTLFLDEVAELPLDMQVKLLRAIQEGEIDPVGSRKSVKVNIRLISATNRNMIEMVKAGQFREDLYYRLNVYPMMVPPLRDRKDDIPALVEHFITRLSAEEGRKVRGITPNVLPMLQAYGWPGNVRQLENTIFRAIVLCESDVLEIQDFPQIASLVEGYEIIVPPAMPLAKKPAAPAGPA-MTGGNQHVSRSAGHQVSDGMALGIPAVTDGGHIRKLEEVEADMIRLALNRYRGQMSEVARKLGIGRSTLYRKMRDLGL 1287
            +EK+   R D+PVIVQTAQGSIETV+KAMRAGADDFVVKPVSPERL+ISIQNLLKVN LTEEVKRLN KV G L+F +LIASSPAMANV +LG+R A+SNIP+LIEGESGVGKEM+ARAIQGES+RAG+PFV VNCGAIP NLVES LFGHEKGSFTGA S+H GKF EA GGTLFLDEVAELPLDMQVKLLRA+QEGE+DPVGSRK VKV+IRLISATNR+MIEMVK G+FREDLYYRLNV+P+ VPPLR+R  DI AL EHFI R +AEEGRKV GI P  L +L+AY WPGNVRQLENTIFRAIVL ESD+L++ DFPQIA+LV+G++  VP A  LA  P  P+G A M GG+   S      +SDG  +GI AVTDGGHIR+LEE+E DMIRLAL+RYRGQMS+VARKLGIGRSTLYRKMR LGL
Sbjct:   68 LEKLSVHRPDMPVIVQTAQGSIETVVKAMRAGADDFVVKPVSPERLRISIQNLLKVNRLTEEVKRLNSKVAGLLTFDELIASSPAMANVTKLGQRAAKSNIPVLIEGESGVGKEMVARAIQGESDRAGKPFVTVNCGAIPVNLVESTLFGHEKGSFTGAISKHIGKFQEASGGTLFLDEVAELPLDMQVKLLRALQEGEVDPVGSRKPVKVDIRLISATNRDMIEMVKGGEFREDLYYRLNVFPVNVPPLRERISDIAALCEHFIVRFAAEEGRKVHGIAPRALDLLRAYAWPGNVRQLENTIFRAIVLSESDMLQVDDFPQIAALVDGFDATVPDAPALAPAPVLPSGQAAMIGGDSPASPVGA--ISDGSGVGISAVTDGGHIRRLEEIEKDMIRLALHRYRGQMSQVARKLGIGRSTLYRKMRSLGL 495          
BLAST of mRNA_P-wetherbeei_contig19412.1.1 vs. uniprot
Match: UPI0011853586 (sigma-54 dependent transcriptional regulator n=1 Tax=Rhodoligotrophos appendicifer TaxID=987056 RepID=UPI0011853586)

HSP 1 Score: 617 bits (1592), Expect = 2.350e-218
Identity = 323/424 (76.18%), Postives = 358/424 (84.43%), Query Frame = 1
Query:   22 RGDIPVIVQTAQGSIETVIKAMRAGADDFVVKPVSPERLKISIQNLLKVNALTEEVKRLNKKVGGSLSFGDLIASSPAMANVLRLGRRGAQSNIPILIEGESGVGKEMIARAIQGESERAGRPFVAVNCGAIPENLVESILFGHEKGSFTGATSRHSGKFLEADGGTLFLDEVAELPLDMQVKLLRAIQEGEIDPVGSRKSVKVNIRLISATNRNMIEMVKAGQFREDLYYRLNVYPMMVPPLRDRKDDIPALVEHFITRLSAEEGRKVRGITPNVLPMLQAYGWPGNVRQLENTIFRAIVLCESDVLEIQDFPQIASLVEGYEIIVP--PAMPLAKKPAAPAGPAMTGGNQHVSRSAGHQVSDGMALGIPAVTDGGHIRKLEEVEADMIRLALNRYRGQMSEVARKLGIGRSTLYRKMRDLGL 1287
            R D+ V++QT+ GSIETV+K+MRAGADDFVVKPV+PERLK+SIQNLLKV+ALTEEVKRLN K  G+L+F  LIA+S  MANV RLGRR A SNIPILIEGESGVGKEMIARAIQGES+R G+PFV VNCGAIPENLVESILFGHEKG+FTGA  +H GKFLEA+GGTLFLDEV ELP D+QVKLLRAIQEGEIDPVG+RK VKVNIRLISATNR+MIEMVK G FREDLYYRLNV+P+MVPPLRDR +DIP LV+HFI R +AEEGRK+RGI PN L MLQAY WPGNVRQLENT+FRAIVLCE+D LEI DFPQIA+ V+GYE  +P  P+     KP   A     GGN    +  G  V    ALGI AVT GGHIRKLEEVEADMIRLA+ RYRGQMSEVARKLGIGRSTLYRK+RDLGL
Sbjct:   75 RKDVAVVIQTSHGSIETVVKSMRAGADDFVVKPVNPERLKVSIQNLLKVSALTEEVKRLNAKATGALTFDGLIAASAGMANVSRLGRRAAASNIPILIEGESGVGKEMIARAIQGESDRRGKPFVTVNCGAIPENLVESILFGHEKGAFTGAVQKHPGKFLEANGGTLFLDEVGELPSDIQVKLLRAIQEGEIDPVGARKPVKVNIRLISATNRDMIEMVKRGTFREDLYYRLNVFPIMVPPLRDRLEDIPPLVDHFIVRFAAEEGRKIRGIAPNALAMLQAYSWPGNVRQLENTVFRAIVLCETDRLEIDDFPQIAAQVDGYEPRIPSVPSAATPGKPEIAAAAGQDGGNVPPGQVVGGHV----ALGISAVTSGGHIRKLEEVEADMIRLAMERYRGQMSEVARKLGIGRSTLYRKVRDLGL 494          
BLAST of mRNA_P-wetherbeei_contig19412.1.1 vs. uniprot
Match: UPI0010C9F8BF (sigma-54 dependent transcriptional regulator n=1 Tax=Rhodoligotrophos defluvii TaxID=2561934 RepID=UPI0010C9F8BF)

HSP 1 Score: 610 bits (1574), Expect = 1.530e-215
Identity = 321/427 (75.18%), Postives = 353/427 (82.67%), Query Frame = 1
Query:   22 RGDIPVIVQTAQGSIETVIKAMRAGADDFVVKPVSPERLKISIQNLLKVNALTEEVKRLNKKVGGSLSFGDLIASSPAMANVLRLGRRGAQSNIPILIEGESGVGKEMIARAIQGESERAGRPFVAVNCGAIPENLVESILFGHEKGSFTGATSRHSGKFLEADGGTLFLDEVAELPLDMQVKLLRAIQEGEIDPVGSRKSVKVNIRLISATNRNMIEMVKAGQFREDLYYRLNVYPMMVPPLRDRKDDIPALVEHFITRLSAEEGRKVRGITPNVLPMLQAYGWPGNVRQLENTIFRAIVLCESDVLEIQDFPQIASLVEGYEIIVPPA----MPLAKKPAAPA-GPAMTGGNQHVSRSAGHQVSDGMALGIPAVTDGGHIRKLEEVEADMIRLALNRYRGQMSEVARKLGIGRSTLYRKMRDLGL 1287
            R D+PVIVQT+ GSIETV+KAMRAGADDFVVKPV+PERLK+SIQNLLKVNALTEEVKRLN +  G L+F  LIA SPAM+ V RLGRR A SNIPILIEGESGVGKEMIARAIQGES+R G+PFV VNCGAIPENLVESILFGHEKG+FTGA  +H GKF EADGGTLFLDEV ELP D+QVKLLRAIQEGEIDPVG+RK VKVNIRLISATNRN+I+MVK G FREDLYYRLNV+P+ VPPLR+R +DIP LVEHFI R +AEEGRK+RGI+P  L MLQ+Y WPGNVRQLEN +FRAIVLCE D LE+ DFPQIA  V GY   +PPA            AP  GPA  G     + S+      G+ LGIPAVT GGHIRKLEEVEADMIRLA+ RYRGQMSEVARKLGIGRSTLYRK+RDLGL
Sbjct:   75 RKDLPVIVQTSHGSIETVVKAMRAGADDFVVKPVNPERLKVSIQNLLKVNALTEEVKRLNARASGQLTFDSLIAESPAMSAVARLGRRAAASNIPILIEGESGVGKEMIARAIQGESDRRGKPFVTVNCGAIPENLVESILFGHEKGAFTGAVQKHIGKFQEADGGTLFLDEVGELPADIQVKLLRAIQEGEIDPVGARKPVKVNIRLISATNRNLIDMVKRGTFREDLYYRLNVFPINVPPLRERLEDIPPLVEHFIVRFAAEEGRKIRGISPTALNMLQSYSWPGNVRQLENAVFRAIVLCEGDTLEVNDFPQIAPQVGGYAARIPPAPXXXXXXXXXXTAPLQGPAAAG--DPAAGSSDQIAGAGVPLGIPAVTSGGHIRKLEEVEADMIRLAMQRYRGQMSEVARKLGIGRSTLYRKIRDLGL 499          
BLAST of mRNA_P-wetherbeei_contig19412.1.1 vs. uniprot
Match: A0A7C5SDT8_9PROT (Sigma-54-dependent Fis family transcriptional regulator n=1 Tax=Thermopetrobacter sp. TaxID=2268141 RepID=A0A7C5SDT8_9PROT)

HSP 1 Score: 608 bits (1567), Expect = 6.520e-215
Identity = 321/429 (74.83%), Postives = 360/429 (83.92%), Query Frame = 1
Query:    1 IEKMQGIRGDIPVIVQTAQGSIETVIKAMRAGADDFVVKPVSPERLKISIQNLLKVNALTEEVKRLNKKVGGSLSFGDLIASSPAMANVLRLGRRGAQSNIPILIEGESGVGKEMIARAIQGESERAGRPFVAVNCGAIPENLVESILFGHEKGSFTGATSRHSGKFLEADGGTLFLDEVAELPLDMQVKLLRAIQEGEIDPVGSRKSVKVNIRLISATNRNMIEMVKAGQFREDLYYRLNVYPMMVPPLRDRKDDIPALVEHFITRLSAEEGRKVRGITPNVLPMLQAYGWPGNVRQLENTIFRAIVLCESDVLEIQDFPQIASLVEGYEIIVPPAMPLAKKPAAPAGPAMTGGNQHVSRSAGHQVSDGMALGIPAVTDGGHIRKLEEVEADMIRLALNRYRGQMSEVARKLGIGRSTLYRKMRDLGL 1287
            +EK+   R ++PVIVQTAQGSIE V++AMRAGADDFVVKPV+PERLK+SIQNLLKVNALTEEVKRLNKKV G+L+F DLI  SP M  V+ LGRR AQSNIP+LIEGESGVGKEM+ARAIQGES RAG+PFVAVNCGAIPENLVES LFGHEKG+FTGA S+H GKF EA GGTLFLDEVAEL LDMQVKLLRA+QEGEIDPVG+R+ VKV++R+ISATNR+MIEMVK G FREDLYYRLNV+P+MVPPLR R  DIP LVEHFI R +AEEGRKVRGI P+ L MLQ Y WPGNVRQLENTIFRAIVL E D L I DFPQIA+LVEGY++ VP A      PA P  PA TG     +      V+DG A+G+  VT+GGH+R LEEVEADMIRLAL RYRGQMSEVARKLGIGRSTLYRK++ LG+
Sbjct:   51 LEKLSIDRPEMPVIVQTAQGSIEMVVRAMRAGADDFVVKPVNPERLKVSIQNLLKVNALTEEVKRLNKKVKGALTFDDLIVKSPGMQQVVNLGRRAAQSNIPVLIEGESGVGKEMVARAIQGESARAGKPFVAVNCGAIPENLVESTLFGHEKGAFTGAVSKHIGKFQEASGGTLFLDEVAELSLDMQVKLLRALQEGEIDPVGARRPVKVDVRIISATNRDMIEMVKQGTFREDLYYRLNVFPIMVPPLRKRVADIPPLVEHFIHRFAAEEGRKVRGIAPDALRMLQQYSWPGNVRQLENTIFRAIVLAEGDELTIADFPQIAALVEGYDVQVPAA------PAEPQ-PAQTGPAGGAAADPA-TVADGSAIGVSVVTEGGHVRTLEEVEADMIRLALARYRGQMSEVARKLGIGRSTLYRKIKALGI 471          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19412.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019C3BD795.490e-25384.62Sigma-54-dependent Fis family transcriptional regu... [more]
A0A2W2BYR6_9HYPH1.050e-25083.68Sigma-54-dependent Fis family transcriptional regu... [more]
A0A6G6WNW1_9HYPH4.230e-24783.06Sigma-54-dependent Fis family transcriptional regu... [more]
UPI0018C834EA1.510e-24080.65sigma-54 dependent transcriptional regulator n=1 T... [more]
A0A7Y2FRH9_9HYPH4.450e-22980.78Sigma-54-dependent Fis family transcriptional regu... [more]
A0A848Y6V8_9HYPH2.700e-22477.00Sigma-54-dependent Fis family transcriptional regu... [more]
A0A7V2SQ17_9HYPH6.710e-22376.28Sigma-54-dependent Fis family transcriptional regu... [more]
UPI00118535862.350e-21876.18sigma-54 dependent transcriptional regulator n=1 T... [more]
UPI0010C9F8BF1.530e-21575.18sigma-54 dependent transcriptional regulator n=1 T... [more]
A0A7C5SDT8_9PROT6.520e-21574.83Sigma-54-dependent Fis family transcriptional regu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19412contigP-wetherbeei_contig19412:1..1287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1282876.BAOK01000001_gene1012
Preferred nametacA
PFAMsHTH_8,Response_reg,Sigma54_activ_2,Sigma54_activat
Model size1287
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003700,GO:0004857,GO:0006355,GO:0008073,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010967,GO:0019219,GO:0019222,GO:0030234,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0033238,GO:0042979,GO:0043086,GO:0044092,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0065009,GO:0080090,GO:0098772,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons1
Evalue6.11e-194
EggNOG OGsCOG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,2TQPG@28211|Alphaproteobacteria,4BR8G@82117|unclassified Alphaproteobacteria
DescriptionSigma-54 interaction domain
Cds size1278
COG categoryT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186171.5626175-UTR-P-wetherbeei_contig19412:0..91683186171.5626175-UTR-P-wetherbeei_contig19412:0..9Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19412 1..9 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186171.5731752-CDS-P-wetherbeei_contig19412:9..12871683186171.5731752-CDS-P-wetherbeei_contig19412:9..1287Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19412 10..1287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19412.1.1prot_P-wetherbeei_contig19412.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19412 10..1287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19412.1.1

>prot_P-wetherbeei_contig19412.1.1 ID=prot_P-wetherbeei_contig19412.1.1|Name=mRNA_P-wetherbeei_contig19412.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=426bp
MQGIRGDIPVIVQTAQGSIETVIKAMRAGADDFVVKPVSPERLKISIQNL
LKVNALTEEVKRLNKKVGGSLSFGDLIASSPAMANVLRLGRRGAQSNIPI
LIEGESGVGKEMIARAIQGESERAGRPFVAVNCGAIPENLVESILFGHEK
GSFTGATSRHSGKFLEADGGTLFLDEVAELPLDMQVKLLRAIQEGEIDPV
GSRKSVKVNIRLISATNRNMIEMVKAGQFREDLYYRLNVYPMMVPPLRDR
KDDIPALVEHFITRLSAEEGRKVRGITPNVLPMLQAYGWPGNVRQLENTI
FRAIVLCESDVLEIQDFPQIASLVEGYEIIVPPAMPLAKKPAAPAGPAMT
GGNQHVSRSAGHQVSDGMALGIPAVTDGGHIRKLEEVEADMIRLALNRYR
GQMSEVARKLGIGRSTLYRKMRDLGL
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mRNA from alignment at P-wetherbeei_contig19412:1..1287+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19412.1.1 ID=mRNA_P-wetherbeei_contig19412.1.1|Name=mRNA_P-wetherbeei_contig19412.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1287bp|location=Sequence derived from alignment at P-wetherbeei_contig19412:1..1287+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGAAAAAATGCAGGGCATTCGCGGCGACATCCCGGTCATCGTGCAAAC CGCACAGGGCTCCATCGAAACCGTGATCAAGGCCATGCGCGCCGGCGCTG ATGACTTCGTGGTCAAGCCCGTTTCGCCCGAGCGCCTGAAAATTTCCATT CAGAATTTGTTAAAGGTCAACGCGCTGACCGAAGAAGTGAAGCGCCTGAA CAAAAAAGTTGGCGGCTCATTGAGTTTCGGCGACCTCATCGCCTCATCGC CTGCCATGGCCAATGTCTTGCGGCTCGGCCGCCGCGGCGCACAGTCCAAC ATTCCCATCCTCATTGAAGGTGAATCGGGTGTCGGCAAGGAAATGATTGC CCGCGCCATCCAGGGTGAAAGCGAACGCGCCGGTCGCCCCTTTGTGGCGG TGAACTGCGGTGCCATTCCCGAAAACCTTGTCGAATCCATTCTCTTTGGC CATGAAAAAGGTTCCTTCACCGGCGCCACCAGCCGGCATAGCGGAAAATT CCTGGAAGCTGACGGCGGCACCCTGTTTCTCGACGAAGTGGCGGAACTGC CGCTTGACATGCAGGTGAAATTGCTGCGCGCCATTCAGGAAGGCGAAATT GACCCGGTAGGCTCGCGGAAATCCGTCAAGGTGAACATCCGCCTGATTTC GGCCACCAACCGCAACATGATTGAAATGGTGAAAGCCGGCCAGTTCCGCG AAGACCTGTATTACCGCCTGAATGTCTATCCCATGATGGTGCCGCCGCTG CGTGACCGCAAAGATGATATTCCGGCCCTTGTCGAACATTTCATCACCAG GTTGTCCGCTGAAGAAGGCCGCAAGGTTCGCGGCATTACCCCCAACGTTC TTCCCATGCTGCAGGCCTACGGCTGGCCGGGCAACGTGCGCCAACTTGAA AACACCATCTTCCGCGCCATTGTCCTGTGCGAAAGCGATGTTCTCGAGAT CCAGGACTTTCCGCAGATCGCCTCGCTTGTGGAAGGCTACGAGATCATCG TGCCGCCTGCCATGCCATTAGCCAAGAAACCAGCAGCACCGGCAGGTCCC GCCATGACCGGTGGAAACCAGCACGTCAGCCGTTCCGCCGGCCATCAGGT GAGTGATGGCATGGCACTGGGAATTCCAGCGGTTACCGACGGCGGCCATA TTCGCAAGCTCGAGGAAGTTGAAGCCGACATGATCCGTCTGGCTCTTAAC CGTTACCGTGGTCAAATGTCAGAAGTAGCAAGGAAATTAGGCATCGGACG CTCCACGCTCTACCGGAAAATGCGCGACTTGGGCCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19412:1..1287+

>mRNA_P-wetherbeei_contig19412.1.1 ID=mRNA_P-wetherbeei_contig19412.1.1|Name=mRNA_P-wetherbeei_contig19412.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1278bp|location=Sequence derived from alignment at P-wetherbeei_contig19412:1..1287+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGGCATTCGCGGCGACATCCCGGTCATCGTGCAAACCGCACAGGG
CTCCATCGAAACCGTGATCAAGGCCATGCGCGCCGGCGCTGATGACTTCG
TGGTCAAGCCCGTTTCGCCCGAGCGCCTGAAAATTTCCATTCAGAATTTG
TTAAAGGTCAACGCGCTGACCGAAGAAGTGAAGCGCCTGAACAAAAAAGT
TGGCGGCTCATTGAGTTTCGGCGACCTCATCGCCTCATCGCCTGCCATGG
CCAATGTCTTGCGGCTCGGCCGCCGCGGCGCACAGTCCAACATTCCCATC
CTCATTGAAGGTGAATCGGGTGTCGGCAAGGAAATGATTGCCCGCGCCAT
CCAGGGTGAAAGCGAACGCGCCGGTCGCCCCTTTGTGGCGGTGAACTGCG
GTGCCATTCCCGAAAACCTTGTCGAATCCATTCTCTTTGGCCATGAAAAA
GGTTCCTTCACCGGCGCCACCAGCCGGCATAGCGGAAAATTCCTGGAAGC
TGACGGCGGCACCCTGTTTCTCGACGAAGTGGCGGAACTGCCGCTTGACA
TGCAGGTGAAATTGCTGCGCGCCATTCAGGAAGGCGAAATTGACCCGGTA
GGCTCGCGGAAATCCGTCAAGGTGAACATCCGCCTGATTTCGGCCACCAA
CCGCAACATGATTGAAATGGTGAAAGCCGGCCAGTTCCGCGAAGACCTGT
ATTACCGCCTGAATGTCTATCCCATGATGGTGCCGCCGCTGCGTGACCGC
AAAGATGATATTCCGGCCCTTGTCGAACATTTCATCACCAGGTTGTCCGC
TGAAGAAGGCCGCAAGGTTCGCGGCATTACCCCCAACGTTCTTCCCATGC
TGCAGGCCTACGGCTGGCCGGGCAACGTGCGCCAACTTGAAAACACCATC
TTCCGCGCCATTGTCCTGTGCGAAAGCGATGTTCTCGAGATCCAGGACTT
TCCGCAGATCGCCTCGCTTGTGGAAGGCTACGAGATCATCGTGCCGCCTG
CCATGCCATTAGCCAAGAAACCAGCAGCACCGGCAGGTCCCGCCATGACC
GGTGGAAACCAGCACGTCAGCCGTTCCGCCGGCCATCAGGTGAGTGATGG
CATGGCACTGGGAATTCCAGCGGTTACCGACGGCGGCCATATTCGCAAGC
TCGAGGAAGTTGAAGCCGACATGATCCGTCTGGCTCTTAACCGTTACCGT
GGTCAAATGTCAGAAGTAGCAAGGAAATTAGGCATCGGACGCTCCACGCT
CTACCGGAAAATGCGCGACTTGGGCCTT
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