mRNA_P-wetherbeei_contig19406.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19406.1.1
Unique NamemRNA_P-wetherbeei_contig19406.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19406.1.1 vs. uniprot
Match: D7FMV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV8_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 2.190e-5
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    7 GTSASTGFVTFTNLVTAAEAAQVRVMDRPGMFIAAAAPEPRDLVWRNVPHSLFQIQHR 180
            G  + TGFVTF  L   A A    V +RP +F    APEPRD+VW+NV + +  +Q+R
Sbjct: 1429 GGMSGTGFVTFKCLSGRACAVSTLVTNRPEVFNLTPAPEPRDIVWKNVTNHVIHVQNR 1486
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BLAST of mRNA_P-wetherbeei_contig19406.1.1 vs. uniprot
Match: A0A6H5KIL5_9PHAE (ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL5_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 2.990e-5
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    7 GTSASTGFVTFTNLVTAAEAAQVRVMDRPGMFIAAAAPEPRDLVWRNVPHSLFQIQHR 180
            G  + TGFVTF  L   A A    V +RP +F    APEPRD+VW+NV + +  +Q+R
Sbjct: 1185 GGMSGTGFVTFKCLSGRACAVSTLVTNRPEVFNLKPAPEPRDIVWKNVTNHVIHVQNR 1242
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19406.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMV8_ECTSI2.190e-544.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIL5_9PHAE2.990e-544.83ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19406contigP-wetherbeei_contig19406:527..706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FMV8
PFAMsPHM7_cyt,RSN1_7TM,RSN1_TM
Model size180
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.59e-06
EggNOG OGsCOG5594@1|root,KOG1134@2759|Eukaryota
Descriptionion transport
Cds size180
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186171.4341512-CDS-P-wetherbeei_contig19406:526..7061683186171.4341512-CDS-P-wetherbeei_contig19406:526..706Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19406 527..706 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19406.1.1prot_P-wetherbeei_contig19406.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19406 527..706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19406.1.1

>prot_P-wetherbeei_contig19406.1.1 ID=prot_P-wetherbeei_contig19406.1.1|Name=mRNA_P-wetherbeei_contig19406.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=60bp
TFGTSASTGFVTFTNLVTAAEAAQVRVMDRPGMFIAAAAPEPRDLVWRNV
PHSLFQIQHR
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mRNA from alignment at P-wetherbeei_contig19406:527..706-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19406.1.1 ID=mRNA_P-wetherbeei_contig19406.1.1|Name=mRNA_P-wetherbeei_contig19406.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig19406:527..706- (Phaeothamnion wetherbeei SAG_119_79)
ACCTTCGGCACGAGCGCGTCGACGGGCTTCGTGACCTTTACGAACCTCGT
GACGGCGGCGGAGGCGGCACAAGTCCGCGTCATGGACCGCCCGGGCATGT
TCATCGCGGCGGCGGCGCCGGAGCCTCGGGACCTCGTCTGGAGGAACGTC
CCGCACTCGCTCTTCCAGATTCAGCACAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19406:527..706-

>mRNA_P-wetherbeei_contig19406.1.1 ID=mRNA_P-wetherbeei_contig19406.1.1|Name=mRNA_P-wetherbeei_contig19406.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig19406:527..706- (Phaeothamnion wetherbeei SAG_119_79)
ACCTTCGGCACGAGCGCGTCGACGGGCTTCGTGACCTTTACGAACCTCGT
GACGGCGGCGGAGGCGGCACAAGTCCGCGTCATGGACCGCCCGGGCATGT
TCATCGCGGCGGCGGCGCCGGAGCCTCGGGACCTCGTCTGGAGGAACGTC
CCGCACTCGCTCTTCCAGATTCAGCACAGG
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