mRNA_P-wetherbeei_contig1938.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1938.1.2
Unique NamemRNA_P-wetherbeei_contig1938.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1938.1.2 vs. uniprot
Match: A0A6H5L555_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L555_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 1.440e-66
Identity = 119/240 (49.58%), Postives = 162/240 (67.50%), Query Frame = 2
Query:  584 RLWADTAAAVASSFCVAPIITIVDRSIVLTANGAASMGQSVQAGVRGMVQSPARFVLGKEFLWVWGLYGATFVAANMIATACDELQASSTLPKFFGTTAVNMPSCIAKDAAFARMFGAAGRAGAVPALSYALFTVRDCITIAAGFTLPESMSDSLRESVGWTKDVSDNVSQLLCPGLMQFITTPLHLLGLDLYNNPGGSFRPRCATVSKNYMPSLVLRFGRVGAAFGIGGVANKAIRDAL 1303
            RL +D AAA  +S  V+P I+IVDR+I+ +A+G+  M  SV  G R +   PA F+   +F+  + LYGAT++AAN I+T  DE   S T+PKF GTTA+NMP  IAKD A  ++FG  G A  VPA S+ALFTVRD  T+AA FTLP  MS  ++ES G    ++D  SQL+ PGL+Q  +TP+H+LGLDLYN+P  S R R   V  ++MP++ +R  R+G AFG+GG+ N +IR+ L
Sbjct:   63 RLVSDFAAASMASLMVSPFISIVDRAIIQSASGSMGMKASVAQGFRVLATKPALFLARPDFICTFCLYGATYLAANTISTMADEYSRSDTMPKFLGTTAINMPGSIAKDQALTKIFGVVGSAAKVPAASFALFTVRDVATMAAAFTLPTPMSARMQESFGVDSGMADVTSQLVSPGLVQVFSTPVHILGLDLYNHPRSSCRARLRVVQDSFMPAIAMRVARIGVAFGVGGLGNTSIRNML 302          
BLAST of mRNA_P-wetherbeei_contig1938.1.2 vs. uniprot
Match: A0A662XCZ4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XCZ4_9STRA)

HSP 1 Score: 223 bits (568), Expect = 6.090e-65
Identity = 121/248 (48.79%), Postives = 160/248 (64.52%), Query Frame = 2
Query:  563 GAFRVLRRLWADTAAAVASSFCVAPIITIVDRSIVLTANGAASMGQSVQAGVRGMVQSPARFVLGKEFLWVWGLYGATFVAANMIATACDELQASSTLPKFFGTTAVNMPSCIAKDAAFARMFGAAGRAGAVPALSYALFTVRDCITIAAGFTLPESMSDSLRESVGWTKDVSDNVSQLLCPGLMQFITTPLHLLGLDLYNNPGGSFRPRCATVSKNYMPSLVLRFGRVGAAFGIGGVANKAIRDALQ 1306
            GA  + +RL  D AAA+A+S  VAP ITIVDR+I+  A+GA  +G  ++      V+ P RFV+ +EFL ++GLY AT+V+AN I T C+  +  + +PKF GTTAVNM  CIAKD AFARMFG    A A P  S  LF VRD +T+AA F  P+ ++  L +        +  ++QL+CP  +QFI+TPLHLLGLDLYNN G S   R + V + Y+ S+  R GR+G AFGIGGV N   RD L+
Sbjct:   12 GASALAKRLGIDLAAAMAASVSVAPFITIVDRAIIENASGARPLGVGLKQLAADFVRHPLRFVVKREFLLIFGLYSATYVSANAIDTMCEFAEKDNQMPKFIGTTAVNMSLCIAKDRAFARMFGVIAPA-AFPLASIGLFAVRDSLTVAASFNAPKFLAKKLEDDAKMQPSRAGTIAQLVCPAAVQFISTPLHLLGLDLYNNKGLSAAKRASFVQREYLKSVFARIGRIGPAFGIGGVGNTYFRDQLR 258          
BLAST of mRNA_P-wetherbeei_contig1938.1.2 vs. uniprot
Match: A0A0P1AEL6_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AEL6_PLAHL)

HSP 1 Score: 216 bits (549), Expect = 3.700e-62
Identity = 112/248 (45.16%), Postives = 160/248 (64.52%), Query Frame = 2
Query:  563 GAFRVLRRLWADTAAAVASSFCVAPIITIVDRSIVLTANGAASMGQSVQAGVRGMVQSPARFVLGKEFLWVWGLYGATFVAANMIATACDELQASSTLPKFFGTTAVNMPSCIAKDAAFARMFGAAGRAGAVPALSYALFTVRDCITIAAGFTLPESMSDSLRESVGWTKDVSDNVSQLLCPGLMQFITTPLHLLGLDLYNNPGGSFRPRCATVSKNYMPSLVLRFGRVGAAFGIGGVANKAIRDALQ 1306
            G+ +++ RL  DT AA+A+S  VAP ITIVDR+I+  A+GA  +G+ ++      +++P RF+  +EF  ++GLY AT+  AN++ + C+     S +PKFFGTTAVNM  CIAKD AFARMFG     GA P  S  LF VRD +T  A F  P+ ++  L ++    K  +   +QL+CP  +QF++TPLHLLGLDLYNN G +   R   + + Y+ S++ R GR+G AFGIGGV N  +R+ L+
Sbjct:   12 GSVKLVERLVIDTVAAIAASLGVAPFITIVDRAIIENASGARPLGRGLKELSIDFLKNPLRFIGKREFHLIFGLYTATYATANIVDSVCELADTDSQMPKFFGTTAVNMSLCIAKDRAFARMFGVIAP-GAFPLASIGLFAVRDSLTCGASFNAPKVLAKKLEDNQLMEKSSASTFAQLICPAAVQFVSTPLHLLGLDLYNNKGHAVTQRIGFIQREYVKSVLARIGRIGPAFGIGGVGNSYVRNTLR 258          
BLAST of mRNA_P-wetherbeei_contig1938.1.2 vs. uniprot
Match: A0A835Z5G8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G8_9STRA)

HSP 1 Score: 214 bits (544), Expect = 3.570e-61
Identity = 111/237 (46.84%), Postives = 154/237 (64.98%), Query Frame = 2
Query:  596 DTAAAVASSFCVAPIITIVDRSIVLTANGAASMGQSVQAGVRGMVQSPARFVLGKEFLWVWGLYGATFVAANMIATACDELQASSTLPKFFGTTAVNMPSCIAKDAAFARMFGAAGRAGAVPALSYALFTVRDCITIAAGFTLPESMSDSLRESVGWTKDVSDNVSQLLCPGLMQFITTPLHLLGLDLYNNPGGSFRPRCATVSKNYMPSLVLRFGRVGAAFGIGGVANKAIRDALQ 1306
            D  +A  +SF V+P ITIVDRSI+  A+G   MG S++AG++ +V  P  F+   EFL ++G+Y AT+  AN + T C+  +  S  P+F  T+AVNM SCIAKD AF RMFG++    A+P  +YALFT+RD  T+ A F LP  +S+ L ++ G +K  +D  +Q+ CP  +QF++TPLHL+GLDLYNNP  + R R   +   Y  S+  R GR+G AFGIGGV N A R  L+
Sbjct:   40 DVLSAFGASFMVSPFITIVDRSIIQNASGVMQMGDSIRAGIKELVMRPHVFLRRPEFLMIFGVYSATYTTANAVNTTCEHRKVDSAWPRFLSTSAVNMTSCIAKDRAFTRMFGSSAPM-ALPLSTYALFTIRDAGTVGASFNLPGPVSEWL-QAQGMSKARADFTAQMACPAAVQFLSTPLHLIGLDLYNNPKSTARDRWTFMCSKYTSSVAARIGRIGPAFGIGGVGNTAFRKGLR 274          
BLAST of mRNA_P-wetherbeei_contig1938.1.2 vs. uniprot
Match: A0A3M6VQY3_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQY3_9STRA)

HSP 1 Score: 212 bits (539), Expect = 1.110e-60
Identity = 112/245 (45.71%), Postives = 161/245 (65.71%), Query Frame = 2
Query:  563 GAFRVLRRLWADTAAAVASSFCVAPIITIVDRSIVLTANGAASMGQSVQAGVRGMVQSPARFVLGKEFLWVWGLYGATFVAANMIATACDELQASSTLPKFFGTTAVNMPSCIAKDAAFARMFGAAGRAGAVPALSYALFTVRDCITIAAGFTLPESMSDSLRESVGWTKDVSDNVSQLLCPGLMQFITTPLHLLGLDLYNNPGGSFRPRCATVSKNYMPSLVLRFGRVGAAFGIGGVANKAIRD 1297
            G  +++++L  DTAAA+A+S  VAP ITIVDR+I+  A+GA  +G+ ++      +++P RFV  +EF  V+GLY AT++AAN + + C+ ++  + +PKF GTTAVNM  CIAKD AFARMFG    A A P  S  LF VRD +T AA F  P+ ++  + ++    K  +   +QL+CP  +QFI+TPLHLLGLDLYNN G +     + V + Y+ S++ R GR+G AFG+GGV N   R+
Sbjct:   13 GPAKLVKQLMVDTAAAMAASLGVAPFITIVDRAIIENASGARPLGRGIKELSISFLKNPLRFVGKREFHIVFGLYTATYMAANAVDSVCEYIETDNQMPKFIGTTAVNMSLCIAKDRAFARMFGVIAPA-AFPLASIGLFAVRDSMTCAASFNAPKVLAKKIEDNKLMDKSNAGTFAQLICPAAVQFISTPLHLLGLDLYNNKGHTMTQHASLVRREYVKSVLARVGRIGPAFGVGGVGNAYFRN 256          
BLAST of mRNA_P-wetherbeei_contig1938.1.2 vs. uniprot
Match: A0A484DVU1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DVU1_BRELC)

HSP 1 Score: 209 bits (531), Expect = 1.440e-59
Identity = 110/245 (44.90%), Postives = 159/245 (64.90%), Query Frame = 2
Query:  572 RVLRRLWADTAAAVASSFCVAPIITIVDRSIVLTANGAASMGQSVQAGVRGMVQSPARFVLGKEFLWVWGLYGATFVAANMIATACDELQASSTLPKFFGTTAVNMPSCIAKDAAFARMFGAAGRAGAVPALSYALFTVRDCITIAAGFTLPESMSDSLRESVGWTKDVSDNVSQLLCPGLMQFITTPLHLLGLDLYNNPGGSFRPRCATVSKNYMPSLVLRFGRVGAAFGIGGVANKAIRDALQ 1306
            ++ ++L ADTAAA A+S  VAP ITIVDR+I+  A+GA ++ + ++      ++ P RFV  +EF  ++GLY AT+V AN++ + C+  +  + +PKFFG TAVNM  CIAKD AFARMFG     GA P  S  LF +RD +T  A F  P+ ++ ++ E     +  ++  +QLLCP  +QF++TPLHLLGLDLYNN G +   R   + + Y+ S++ R GR+G AFGIGGV N   R+ L+
Sbjct:   12 KLAKQLVADTAAATAASLGVAPFITIVDRAIIENASGARALSRGLKELSVEFLKHPLRFVGKREFHLIFGLYTATYVTANVVDSVCEYAETDNQMPKFFGVTAVNMSLCIAKDRAFARMFGVIAP-GAFPLASIGLFAIRDSLTCGASFNAPKVLAKTIEEKGLMERSGANTFAQLLCPAAVQFVSTPLHLLGLDLYNNKGHAIGRRVNFIQREYVKSVLARVGRIGPAFGIGGVGNNYFRNTLR 255          
BLAST of mRNA_P-wetherbeei_contig1938.1.2 vs. uniprot
Match: H3GH37_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GH37_PHYRM)

HSP 1 Score: 209 bits (531), Expect = 1.580e-59
Identity = 115/248 (46.37%), Postives = 159/248 (64.11%), Query Frame = 2
Query:  563 GAFRVLRRLWADTAAAVASSFCVAPIITIVDRSIVLTANGAASMGQSVQAGVRGMVQSPARFVLGKEFLWVWGLYGATFVAANMIATACDELQASSTLPKFFGTTAVNMPSCIAKDAAFARMFGAAGRAGAVPALSYALFTVRDCITIAAGFTLPESMSDSLRESVGWTKDVSDNVSQLLCPGLMQFITTPLHLLGLDLYNNPGGSFRPRCATVSKNYMPSLVLRFGRVGAAFGIGGVANKAIRDALQ 1306
            GA ++ + L ADTAAA+A+S  VAP ITIVDR+I+  A+GA  +G+ ++      V+ P RFV  +EF  ++GLY AT++AAN+  TAC+  +  + +PKF  TTAVNM  CIAKD AFARMFG    A A P  S  LF VRD +T  A F  P+ ++  + +     K  +   +QL+CP  +Q ++TPLHLLGLDLYNN G +   R + V + Y+ S++ R GR+G AFGIGGV N   R+ L+
Sbjct:   12 GAAQLAKHLVADTAAAMAASLGVAPFITIVDRAIIENASGARPLGRGLRELSADFVRHPLRFVGKREFHLIFGLYTATYMAANVTDTACEYAEMDNQMPKFISTTAVNMSLCIAKDRAFARMFGVIAPA-AFPLTSIGLFAVRDSMTCGASFNAPKVLAKKIEDKGLMEKSGAATFAQLVCPAAVQLLSTPLHLLGLDLYNNQGHAVAKRVSFVKREYVKSVLARIGRIGPAFGIGGVGNTYFRNTLR 258          
BLAST of mRNA_P-wetherbeei_contig1938.1.2 vs. uniprot
Match: K3WSU5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSU5_GLOUD)

HSP 1 Score: 209 bits (531), Expect = 1.630e-59
Identity = 112/244 (45.90%), Postives = 155/244 (63.52%), Query Frame = 2
Query:  575 VLRRLWADTAAAVASSFCVAPIITIVDRSIVLTANGAASMGQSVQAGVRGMVQSPARFVLGKEFLWVWGLYGATFVAANMIATACDELQASSTLPKFFGTTAVNMPSCIAKDAAFARMFGAAGRAGAVPALSYALFTVRDCITIAAGFTLPESMSDSLRESVGWTKDVSDNVSQLLCPGLMQFITTPLHLLGLDLYNNPGGSFRPRCATVSKNYMPSLVLRFGRVGAAFGIGGVANKAIRDALQ 1306
            V + L  D AAA A+SF V+P ITIVDR+I+  A+GA  +   ++   +  V +P +FV  +EF+ V+GLY +T+ +AN I T C+  +A + +PKF GTTAVNM  CIAKD AFA+MFG    + A P  +  LF +RD +T+ A F  P++++  L    G     +  ++QLLCP  +QF++TPLHLLGLDLYNN G S   R   V + Y+ S V R GR+G AFGIGGV N   R+ L+
Sbjct:   17 VAKNLAIDLAAAAAASFAVSPFITIVDRAIIENASGARPLAVGIKELSKAFVANPFQFVRKREFIIVFGLYTSTYASANAIDTVCEWAEADNQMPKFLGTTAVNMTLCIAKDRAFAQMFGVVAPS-AFPIGAIGLFAIRDSLTVGASFNAPKTVAKKLEVDGGVEPSRAKTLAQLLCPAAVQFVSTPLHLLGLDLYNNKGASVAARFRFVQREYLKSAVARIGRIGPAFGIGGVGNTYCRENLR 259          
BLAST of mRNA_P-wetherbeei_contig1938.1.2 vs. uniprot
Match: A0A5D6XW10_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW10_9STRA)

HSP 1 Score: 208 bits (530), Expect = 2.650e-59
Identity = 111/242 (45.87%), Postives = 150/242 (61.98%), Query Frame = 2
Query:  581 RRLWADTAAAVASSFCVAPIITIVDRSIVLTANGAASMGQSVQAGVRGMVQSPARFVLGKEFLWVWGLYGATFVAANMIATACDELQASSTLPKFFGTTAVNMPSCIAKDAAFARMFGAAGRAGAVPALSYALFTVRDCITIAAGFTLPESMSDSLRESVGWTKDVSDNVSQLLCPGLMQFITTPLHLLGLDLYNNPGGSFRPRCATVSKNYMPSLVLRFGRVGAAFGIGGVANKAIRDALQ 1306
            RRL AD  AA  +SF VAP ITIVDR+I+  A+GA  +G  ++   R   + P  FV  +EF  V+GLY AT+ +AN   + CD  +  S +PKF  TTAVNM  CIAKD AFA+MFG    + A P  +  LF VRD +T+AA F  P++++  L++  G     +   +QLLCP L+QF++TPLHLLGLDLYN+ G         V + Y+ S + R GR+G AFGIGG+ N   R+ L+
Sbjct:   22 RRLAADVTAAATASFAVAPFITIVDRAIIENASGARPLGVGIRELARAFARRPLAFVRTREFAIVFGLYTATYASANATDSLCDFAERDSQMPKFAATTAVNMSLCIAKDRAFAQMFGVVAPS-AFPLAAVGLFAVRDSLTVAASFNAPKAVARKLQDDTGVDPARARTAAQLLCPALVQFVSTPLHLLGLDLYNHKGAGAAAHLRVVRREYLKSAIARIGRIGPAFGIGGIGNAHCRETLR 262          
BLAST of mRNA_P-wetherbeei_contig1938.1.2 vs. uniprot
Match: A0A0L0FIC5_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FIC5_9EUKA)

HSP 1 Score: 208 bits (529), Expect = 3.710e-59
Identity = 106/239 (44.35%), Postives = 153/239 (64.02%), Query Frame = 2
Query:  581 RRLWADTAAAVASSFCVAPIITIVDRSIVLTANGAASMGQSVQAGVRGMVQSPARFVLGKEFLWVWGLYGATFVAANMIATACDELQASSTLPKFFGTTAVNMPSCIAKDAAFARMFGAAGRAGAVPALSYALFTVRDCITIAAGFTLPESMSDSLRESVGWTKDVSDNVSQLLCPGLMQFITTPLHLLGLDLYNNPGGSFRPRCATVSKNYMPSLVLRFGRVGAAFGIGGVANKAIRD 1297
            +R+  D  AA+A++FCV+PIITIVDRSI++ A+GA  +G ++  GV+ +  +P  F+ G +F  +WGLY AT+V AN++ T  +  +  S +PKF  TTAVN   CIAKD AF RMFG       +P  SY LF VRD  TI A F+LP  ++D + +  G+ +  +   +QLLCP  +Q ++TP+HLLGLDLYNN   +   R + V + Y+ S   R  R+  AFGIGG++N+  R+
Sbjct:   24 KRVAIDVGAALAAAFCVSPIITIVDRSIIMNASGAQKLGSALVGGVKQLTFTPTSFIRGLDFRLIWGLYTATYVVANVVDTVSELNKKDSAMPKFVVTTAVNGSLCIAKDRAFTRMFGTIAPTS-LPIGSYGLFAVRDMATIGASFSLPVKVADHMHDEYGYDRKRALFAAQLLCPMAVQLVSTPMHLLGLDLYNNKTATTSQRASFVGREYLKSTAARISRIAPAFGIGGISNRHFRE 261          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1938.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L555_9PHAE1.440e-6649.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A662XCZ4_9STRA6.090e-6548.79Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A0P1AEL6_PLAHL3.700e-6245.16Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A835Z5G8_9STRA3.570e-6146.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3M6VQY3_9STRA1.110e-6045.71Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A484DVU1_BRELC1.440e-5944.90Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
H3GH37_PHYRM1.580e-5946.37Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
K3WSU5_GLOUD1.630e-5945.90Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6XW10_9STRA2.650e-5945.87Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A0L0FIC5_9EUKA3.710e-5944.35Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1938contigP-wetherbeei_contig1938:953..3213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1840
Hectar predicted targeting categoryother localisation
Exons2
Cds size969
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186170.6380732-UTR-P-wetherbeei_contig1938:952..13421683186170.6380732-UTR-P-wetherbeei_contig1938:952..1342Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1938 953..1342 +
1683186170.662142-UTR-P-wetherbeei_contig1938:2732..32131683186170.662142-UTR-P-wetherbeei_contig1938:2732..3213Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1938 2733..3213 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186170.6463668-CDS-P-wetherbeei_contig1938:1342..21001683186170.6463668-CDS-P-wetherbeei_contig1938:1342..2100Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1938 1343..2100 +
1683186170.6543498-CDS-P-wetherbeei_contig1938:2521..27321683186170.6543498-CDS-P-wetherbeei_contig1938:2521..2732Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1938 2522..2732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1938.1.2prot_P-wetherbeei_contig1938.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1938 1343..2732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1938.1.2

>prot_P-wetherbeei_contig1938.1.2 ID=prot_P-wetherbeei_contig1938.1.2|Name=mRNA_P-wetherbeei_contig1938.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=323bp
MGAKPQPKAAAVTKSGIRRPSARKGLGGRRCADKMWRCHRRSVRLNRCWC
CGCWLGRRRVSGPPAAVGRHGGGGGEQLLRGADHHHRRPLHRADGKRRCL
HGPERPGRRPRHGAIPGPLRARQGVPLGLGVVRRYICCRQYDRHRLRRAA
GELHAPEVLWHDGRQYAQLHRQGRRLRPHVRRSRPCRRCARVELRAVHGA
RLHHHRGGVHAAGEHERFSAGVGRLDEGCQRQCLAVAVPWPHAVHHHAPS
SSGAGLVQQPRGILPASLRHRQQELHAISGAPLWTGRSGIRNWRSGQQGD
PRCVAAAEPNGGPARAGGVTAR*
back to top

mRNA from alignment at P-wetherbeei_contig1938:953..3213+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1938.1.2 ID=mRNA_P-wetherbeei_contig1938.1.2|Name=mRNA_P-wetherbeei_contig1938.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2261bp|location=Sequence derived from alignment at P-wetherbeei_contig1938:953..3213+ (Phaeothamnion wetherbeei SAG_119_79)
CGGTCTCGCTGTTGCTGATGTGAGCCTTGGATCGCGGTCTGGTCGGGATC AAAATGCCTTCTTGCTCAGGCCCGGCATCGCTGATCGGTGAGTCAATAAT AATGGTAATGCAGCGTTCGAAGTCGTCTCCGTCCGTGCGCCAATGCCGTT TCATAGGTGGTGGTTCGGAAAGAGTCGTTTTCTGCGTCCTTTTCCCGCCG TTACCCTTTTTCACCGGCAGCACAGATTATACCAGAGCCTGCGCTCTATT AGAAGCGGCACTGGTGCGTGCTGCAAGGTCCAGGCGGCTCCAAGTGGAAA GCAAGCGATGGGGAAGGGGTGGGAGGAATTTGAGATCTTTTCCTCTTGTC TGATGGAATAACTTTGTATCCCGTTCCTCAGGCACATCCAATGGGAGCGA AGCCCCAGCCAAAAGCAGCAGCAGTCACAAAGTCCGGCATTCGGCGGCCG TCGGCCCGCAAAGGCCTCGGCGGCCGCCGCTGCGCAGACAAGATGTGGCG ATGCCACCGCCGTAGTGTCCGCCTCAACCGCTGCTGGTGTTGCGGCTGCT GGCTCGGGAGACGGCGCGTTTCGGGTCCTCCGGCGGCTGTGGGCAGACAC GGCGGCGGCGGTGGCGAGCAGCTTCTGCGTGGCGCCGATCATCACCATCG TCGACCGCTCCATCGTGCTGACGGCAAACGGCGCTGCCTCCATGGGCCAG AGCGTCCAGGCCGGCGTCCGCGGCATGGTGCAATCCCCGGCCCGCTTCGT GCTCGGCAAGGAGTTCCTCTGGGTCTGGGGGTTGTACGGCGCTACATTTG TTGCCGCCAATATGATCGCCACCGCCTGCGACGAGCTGCAGGCGAGCTCC ACGCTCCCGAAGTTCTTTGGCACGACGGCCGTCAATATGCCCAGCTGCAT CGCCAAGGACGCCGCCTTCGCCCGCATGTTCGGCGCAGCCGGCCGTGCCG GCGCTGTGCCCGCGTTGAGCTACGCGCTGTTCACGGTGCGAGACTGCATC ACCATCGCGGCGGGGTTCACGCTGCCGGAGAGCATGAGCGATTCTCTGCG GGAGTCGGTCGGCTGGACGAAGGATGTCAGCGACAATGTCTCGCAGTTGC TGTGCCCTGGCCTCATGCAGTTCATCACCACGCCCCTTCATCTTCTGGGT GAGTAAATGGCTTTCGGTGGACTCGGGGCCCGCATTTGGCTGGTAGCTGG CGCGCTTAGCTGTTTTCTCTGCATTTCTTTTCCTCTTTTGAACTAAAGCT CTAGTGTGTAGGTTTCTCCCGTTTGGCAGTGGTTCTACTGTTATCAGCCA GCGTCGGGATCCCGTCGTGGGTTCTCTTTTTCTCCGCTCTCTGTTTCCGT TACGCTGAATGAGGGAGAGATCGGTATCGCATTTACCTCGTGGCCTGCCT GTTCACGCCTTGTCTTGGGGAGCGGATATACCCTAACAACTTTCCTGTCT AGCTGGTATGCGGGGTTTCCATTCTCCCCTTGCAGCTCTCGCCGCCGTTC TAAATTCTTCAACGGTATCGCGACGACGTCGTGTGGTTCCCTTCGTGTGT TACCCTTCCATCTGTGCAGGGCTGGACTTGTACAACAACCCCGGGGGATC CTTCCGGCCTCGCTGCGCCACCGTCAGCAAGAACTACATGCCATCTCTGG TGCTCCGCTTTGGACGGGTCGGAGCGGCATTCGGAATTGGCGGAGTGGCC AACAAGGCGATCCGCGATGCGTTGCAGCCGCCGAGCCCAATGGCGGCCCT GCCCGTGCTGGCGGCGTAACGGCACGGTAAGTGTCGGTTCAGAAATGTTC ATAGCAAGAAAACGCGGCCGCCCGAGTAGGCAGTGGAACAGCCTTCAGGC AAAAAAAGAGGAAACTTGGGGGGGAAGAATCGATCGAATTACCATTCGGG GAGGGCACGAAAGGGAACCGTGCCCGACCGCTTATTCGAAAAACATTAAG GGAGCTTAGGTTAGTTGAACCAAATGCGGGAACTTGCGACCTGCATCCGT GTGGTGAGCAGTTTGCTGGCGGCCGAAATGCGAAATGCGATTCCATGTCT CGGTTGGCTCACGTCGCGTCAGGCAGCGGAAACCGAGCCTGGCGCGGGCA GTCGCTGGGGGATATTTAGGGAACGAAGACAGGCACGCTGCCGCGTCTTC CAAGCAAGCCACTGCAAAGTGGGCGAAAGACAGAAAGGAAGGTGACCCTG TCCGACAAAGGTCGGGAACGGTCTGAAAGGGCAGCTGATAAATCACACAC GTGTTGCCGAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1938:953..3213+

>mRNA_P-wetherbeei_contig1938.1.2 ID=mRNA_P-wetherbeei_contig1938.1.2|Name=mRNA_P-wetherbeei_contig1938.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=969bp|location=Sequence derived from alignment at P-wetherbeei_contig1938:953..3213+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAGCGAAGCCCCAGCCAAAAGCAGCAGCAGTCACAAAGTCCGGCAT
TCGGCGGCCGTCGGCCCGCAAAGGCCTCGGCGGCCGCCGCTGCGCAGACA
AGATGTGGCGATGCCACCGCCGTAGTGTCCGCCTCAACCGCTGCTGGTGT
TGCGGCTGCTGGCTCGGGAGACGGCGCGTTTCGGGTCCTCCGGCGGCTGT
GGGCAGACACGGCGGCGGCGGTGGCGAGCAGCTTCTGCGTGGCGCCGATC
ATCACCATCGTCGACCGCTCCATCGTGCTGACGGCAAACGGCGCTGCCTC
CATGGGCCAGAGCGTCCAGGCCGGCGTCCGCGGCATGGTGCAATCCCCGG
CCCGCTTCGTGCTCGGCAAGGAGTTCCTCTGGGTCTGGGGGTTGTACGGC
GCTACATTTGTTGCCGCCAATATGATCGCCACCGCCTGCGACGAGCTGCA
GGCGAGCTCCACGCTCCCGAAGTTCTTTGGCACGACGGCCGTCAATATGC
CCAGCTGCATCGCCAAGGACGCCGCCTTCGCCCGCATGTTCGGCGCAGCC
GGCCGTGCCGGCGCTGTGCCCGCGTTGAGCTACGCGCTGTTCACGGTGCG
AGACTGCATCACCATCGCGGCGGGGTTCACGCTGCCGGAGAGCATGAGCG
ATTCTCTGCGGGAGTCGGTCGGCTGGACGAAGGATGTCAGCGACAATGTC
TCGCAGTTGCTGTGCCCTGGCCTCATGCAGTTCATCACCACGCCCCTTCA
TCTTCTGGGGCTGGACTTGTACAACAACCCCGGGGGATCCTTCCGGCCTC
GCTGCGCCACCGTCAGCAAGAACTACATGCCATCTCTGGTGCTCCGCTTT
GGACGGGTCGGAGCGGCATTCGGAATTGGCGGAGTGGCCAACAAGGCGAT
CCGCGATGCGTTGCAGCCGCCGAGCCCAATGGCGGCCCTGCCCGTGCTGG
CGGCGTAACGGCACGGTAA
back to top