mRNA_P-wetherbeei_contig19357.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19357.1.1
Unique NamemRNA_P-wetherbeei_contig19357.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19357.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19357contigP-wetherbeei_contig19357:2..573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog45351.EDO36356
PFAMsProfilin
Model size572
Max annot lvl33208|Metazoa
KEGG koko:K05759
KEGG Pathwayko04013,ko04015,ko04810,ko05131,ko05132,map04013,map04015,map04810,map05131,map05132
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.42e-06
EggNOG OGsKOG1755@1|root,KOG1755@2759|Eukaryota,3A5ND@33154|Opisthokonta,3BQPF@33208|Metazoa
Ec32 ortholog descriptionprofilin
Ec32 orthologEc-12_005550.1
Descriptionactin binding
Cds size546
COG categoryZ
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186170.2446544-UTR-P-wetherbeei_contig19357:1..271683186170.2446544-UTR-P-wetherbeei_contig19357:1..27Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19357 2..27 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186170.2544742-CDS-P-wetherbeei_contig19357:27..5731683186170.2544742-CDS-P-wetherbeei_contig19357:27..573Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19357 28..573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19357.1.1prot_P-wetherbeei_contig19357.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19357 28..573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19357.1.1

>prot_P-wetherbeei_contig19357.1.1 ID=prot_P-wetherbeei_contig19357.1.1|Name=mRNA_P-wetherbeei_contig19357.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=182bp
MNGEKWTVRAKQTVPQASFFRRRAPSFLAATSTISLILDGAMIAATVFPV
NVDFDSAAATVAAAAAHPSPAAVARQCYPDTAAAGPAAVRRRCWPLQLAS
AVGLLRLLPPLLVAAARRRMQLLRKAEDEDVWYFKGKNKSGVCFAATGSL
VIVGAYQGDEHMAGCNGAVEALAKYLKDSGY*
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mRNA from alignment at P-wetherbeei_contig19357:2..573+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19357.1.1 ID=mRNA_P-wetherbeei_contig19357.1.1|Name=mRNA_P-wetherbeei_contig19357.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=572bp|location=Sequence derived from alignment at P-wetherbeei_contig19357:2..573+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCCATCCCGAAACAGGGCATCCGAATGAACGGAGAGAAGTGGACGGTG
AGGGCAAAACAGACCGTTCCGCAAGCCTCATTTTTTCGCCGTCGTGCTCC
GTCTTTCTTGGCTGCCACGTCGACCATATCATTAATTCTGGATGGTGCTA
TGATCGCTGCCACTGTCTTTCCCGTCAATGTTGACTTTGATTCCGCTGCC
GCCACCGTCGCCGCAGCTGCCGCGCACCCCTCACCGGCCGCTGTTGCTCG
CCAATGTTACCCCGATACTGCTGCTGCCGGCCCTGCCGCCGTTCGCCGCC
GCTGTTGGCCGCTGCAATTGGCCTCTGCCGTTGGCCTCCTCCGTTTGCTG
CCGCCTCTTCTCGTTGCCGCTGCTCGCCGCCGCATGCAGTTGCTGCGCAA
GGCCGAAGACGAGGACGTTTGGTACTTCAAGGGAAAGAACAAGTCGGGCG
TGTGCTTCGCCGCCACGGGGTCGCTGGTCATTGTTGGCGCCTACCAGGGG
GACGAGCACATGGCGGGCTGCAACGGTGCCGTCGAGGCGCTCGCCAAGTA
CCTCAAGGACTCCGGCTACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19357:2..573+

>mRNA_P-wetherbeei_contig19357.1.1 ID=mRNA_P-wetherbeei_contig19357.1.1|Name=mRNA_P-wetherbeei_contig19357.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig19357:2..573+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGGAGAGAAGTGGACGGTGAGGGCAAAACAGACCGTTCCGCAAGC
CTCATTTTTTCGCCGTCGTGCTCCGTCTTTCTTGGCTGCCACGTCGACCA
TATCATTAATTCTGGATGGTGCTATGATCGCTGCCACTGTCTTTCCCGTC
AATGTTGACTTTGATTCCGCTGCCGCCACCGTCGCCGCAGCTGCCGCGCA
CCCCTCACCGGCCGCTGTTGCTCGCCAATGTTACCCCGATACTGCTGCTG
CCGGCCCTGCCGCCGTTCGCCGCCGCTGTTGGCCGCTGCAATTGGCCTCT
GCCGTTGGCCTCCTCCGTTTGCTGCCGCCTCTTCTCGTTGCCGCTGCTCG
CCGCCGCATGCAGTTGCTGCGCAAGGCCGAAGACGAGGACGTTTGGTACT
TCAAGGGAAAGAACAAGTCGGGCGTGTGCTTCGCCGCCACGGGGTCGCTG
GTCATTGTTGGCGCCTACCAGGGGGACGAGCACATGGCGGGCTGCAACGG
TGCCGTCGAGGCGCTCGCCAAGTACCTCAAGGACTCCGGCTACTGA
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