mRNA_P-wetherbeei_contig1934.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1934.1.1
Unique NamemRNA_P-wetherbeei_contig1934.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1934.1.1 vs. uniprot
Match: A0A8J1ZFE7_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1ZFE7_9DINO)

HSP 1 Score: 50.8 bits (120), Expect = 2.670e-5
Identity = 19/42 (45.24%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   31 LLLETGTLKHATPALMARAGLVVIGAGDIGWRPLAERWAARR 156
            ++ E   L++A+PA ++RAG++ I A D+GWRP+A+ W A+R
Sbjct: 1499 IVFEVENLRNASPATVSRAGIIYISASDLGWRPVADSWLAKR 1540
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1934.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8J1ZFE7_9DINO2.670e-545.24Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1934contigP-wetherbeei_contig1934:1138..1401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42099.EPrPV00000020150
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N1,DHC_N2,Dynein_heavy,MT
Model size264
Max annot lvl121069|Pythiales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue9.21e-07
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota,1MFPW@121069|Pythiales
Descriptiondynein heavy chain. Source PGD
Cds size264
COG categoryZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186169.9808927-CDS-P-wetherbeei_contig1934:1137..14011683186169.9808927-CDS-P-wetherbeei_contig1934:1137..1401Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1934 1138..1401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1934.1.1prot_P-wetherbeei_contig1934.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1934 1138..1401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1934.1.1

>prot_P-wetherbeei_contig1934.1.1 ID=prot_P-wetherbeei_contig1934.1.1|Name=mRNA_P-wetherbeei_contig1934.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
GALGLGAGVCLLLETGTLKHATPALMARAGLVVIGAGDIGWRPLAERWAA
RRFPSDAGRRAAALELFDAHFPAVSAAVLAVPMARTSP
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mRNA from alignment at P-wetherbeei_contig1934:1138..1401-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1934.1.1 ID=mRNA_P-wetherbeei_contig1934.1.1|Name=mRNA_P-wetherbeei_contig1934.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig1934:1138..1401- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCCCTGGGCCTCGGCGCCGGCGTCTGCCTTCTCTTGGAAACTGGGAC
GCTGAAGCACGCCACGCCGGCGCTGATGGCGCGGGCGGGACTTGTTGTCA
TCGGCGCCGGCGACATCGGCTGGCGGCCGCTGGCGGAGCGCTGGGCGGCA
CGGCGCTTCCCGTCCGATGCCGGCAGGAGAGCAGCAGCCTTGGAGCTCTT
TGACGCCCACTTTCCGGCCGTTTCAGCGGCTGTTTTGGCGGTTCCGATGG
CCAGGACGTCACCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1934:1138..1401-

>mRNA_P-wetherbeei_contig1934.1.1 ID=mRNA_P-wetherbeei_contig1934.1.1|Name=mRNA_P-wetherbeei_contig1934.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig1934:1138..1401- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCCCTGGGCCTCGGCGCCGGCGTCTGCCTTCTCTTGGAAACTGGGAC
GCTGAAGCACGCCACGCCGGCGCTGATGGCGCGGGCGGGACTTGTTGTCA
TCGGCGCCGGCGACATCGGCTGGCGGCCGCTGGCGGAGCGCTGGGCGGCA
CGGCGCTTCCCGTCCGATGCCGGCAGGAGAGCAGCAGCCTTGGAGCTCTT
TGACGCCCACTTTCCGGCCGTTTCAGCGGCTGTTTTGGCGGTTCCGATGG
CCAGGACGTCACCG
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