mRNA_P-wetherbeei_contig19339.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19339.1.1
Unique NamemRNA_P-wetherbeei_contig19339.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig19339.1.1 vs. uniprot
Match: D7G401_ECTSI (RME1, RME-1/EHD family ATPase with a C-terminal EH domain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G401_ECTSI)

HSP 1 Score: 374 bits (960), Expect = 7.180e-124
Identity = 181/197 (91.88%), Postives = 190/197 (96.45%), Query Frame = 3 
Query:  240 MSMADRDEATKAVIEGLKRLYHTKLKPLEQLYMFDFFHSPLLTDSEFDSKPQVLMIGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGPDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIIDTPGILSGEKQRVARGYDFVNVCHWFAERADLILLLFDAHKLDVSDEFKAAID 830
            MSMAD+DEAT AV+EGLKRLYHTKLKPLEQ YMF +FHSP LTDSEF+SKPQVLM GQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDG DERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITI+DTPG+LSGEKQRV+RGYDFVNVCHWFAERADLILLLFDAHKLD+SDEFKA I+
Sbjct:    1 MSMADQDEATAAVVEGLKRLYHTKLKPLEQTYMFGWFHSPPLTDSEFESKPQVLMCGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGSDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIVDTPGVLSGEKQRVSRGYDFVNVCHWFAERADLILLLFDAHKLDISDEFKAVIE 197
[Close]
BLAST of mRNA_P-wetherbeei_contig19339.1.1 vs. uniprot
Match: A0A835YYV9_9STRA (RME1, RME-1/EHD family ATPase with a C-terminal EH domain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYV9_9STRA)

HSP 1 Score: 367 bits (942), Expect = 4.950e-121
Identity = 178/197 (90.36%), Postives = 188/197 (95.43%), Query Frame = 3 
Query:  240 MSMADRDEATKAVIEGLKRLYHTKLKPLEQLYMFDFFHSPLLTDSEFDSKPQVLMIGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGPDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIIDTPGILSGEKQRVARGYDFVNVCHWFAERADLILLLFDAHKLDVSDEFKAAID 830
            MSMADRDEATKAVI+GLK+LYHTKLKPLE  Y+FD FHSPLLTDSEFDSKPQVLMIGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDG DERV+PGNALTVSPNLPYRGLDRFGV+FLNKFE SQLPSPVLRNITI+DTPG+LSGEKQRVARGYDFV V  WFAERADLILLLFDAHKLD+SDEF+A I+
Sbjct:    1 MSMADRDEATKAVIDGLKKLYHTKLKPLESCYLFDHFHSPLLTDSEFDSKPQVLMIGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGADERVIPGNALTVSPNLPYRGLDRFGVAFLNKFEGSQLPSPVLRNITIVDTPGVLSGEKQRVARGYDFVQVNTWFAERADLILLLFDAHKLDISDEFRAVIE 197
[Close]
BLAST of mRNA_P-wetherbeei_contig19339.1.1 vs. uniprot
Match: A0A7S1TT03_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TT03_9STRA)

HSP 1 Score: 308 bits (790), Expect = 5.380e-102
Identity = 144/196 (73.47%), Postives = 172/196 (87.76%), Query Frame = 3 
Query:  240 MSMADRDEATKAVIEGLKRLYHTKLKPLEQLYMFDFFHSPLLTDSEFDSKPQVLMIGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGPDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIIDTPGILSGEKQRVARGYDFVNVCHWFAERADLILLLFDAHKLDVSDEFKAAI 827
            M+M DRD AT+ VIE LK LY   + P+EQ Y ++ F+SPLLT+SEF+SKPQVLMIGQYSTGKTSFI+Y++GRDFPG R+GPEPTTDRFVAVMDGPDERV+PGNAL V+P+LPY GL ++GV+FLN+FE SQL S VLRNI+I+DTPG+LSGEKQR+ RGYDF  VC WFA+R+DLILLLFDAHKLD+SDEFK+ I
Sbjct:    1 MAMVDRDAATQQVIESLKALYTQYILPVEQQYHYEHFYSPLLTESEFESKPQVLMIGQYSTGKTSFIKYIIGRDFPGIRVGPEPTTDRFVAVMDGPDERVIPGNALAVAPHLPYSGLQQYGVNFLNRFEGSQLSSQVLRNISIVDTPGVLSGEKQRLTRGYDFTEVCQWFAQRSDLILLLFDAHKLDISDEFKSVI 196
[Close]
BLAST of mRNA_P-wetherbeei_contig19339.1.1 vs. uniprot
Match: A0A812WW14_SYMMI (Ehd1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WW14_SYMMI)

HSP 1 Score: 308 bits (788), Expect = 1.370e-101
Identity = 142/185 (76.76%), Postives = 166/185 (89.73%), Query Frame = 3 
Query:  276 VIEGLKRLYHTKLKPLEQLYMFDFFHSPLLTDSEFDSKPQVLMIGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGPDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIIDTPGILSGEKQRVARGYDFVNVCHWFAERADLILLLFDAHKLDVSDEFKAAID 830
            VIE LKR+Y +K+ PLE+LY +D FHSP++TD+EFDSKPQV++IGQYS GKTSFIRYLLG+DFPG RIGPEPTTDRF AVMDGPDERV+PGNAL VS +LPYRGL++FGV+FLN+FE SQLPS VLRNIT+IDTPG+LSGEKQRV+RGYDF  VC WFA RADLI+LLFD HKLD+SDEF+  I+
Sbjct:    3 VIEELKRIYKSKIMPLEKLYQYDIFHSPIMTDAEFDSKPQVMLIGQYSVGKTSFIRYLLGKDFPGVRIGPEPTTDRFTAVMDGPDERVIPGNALAVSSDLPYRGLEQFGVAFLNRFEGSQLPSQVLRNITLIDTPGVLSGEKQRVSRGYDFQKVCTWFANRADLIILLFDTHKLDISDEFRGVIE 187
[Close]
BLAST of mRNA_P-wetherbeei_contig19339.1.1 vs. uniprot
Match: A0A7S3HF70_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HF70_9STRA)

HSP 1 Score: 313 bits (801), Expect = 1.390e-100
Identity = 147/197 (74.62%), Postives = 174/197 (88.32%), Query Frame = 3 
Query:  240 MSMADRDEATKAVIEGLKRLYHTKLKPLEQLYMFDFFHSPLLTDSEFDSKPQVLMIGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGPDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIIDTPGILSGEKQRVARGYDFVNVCHWFAERADLILLLFDAHKLDVSDEFKAAID 830
            M+  ++D AT  VI  LKRLY TK+ PLEQLY FD F+SP LTD+EFDSKPQV+++GQYS GKT+FIRYLLG+DFPGQRIGPEPTTDRF A++DGPDERV+PGNAL VS ++PYRGL+RFGV+FLN+FE +QLP+ VL+NIT+IDTPG+LSGEKQRVARGYDF  VC WFA RADLI+LLFDAHKLD+SDEF+ AID
Sbjct:    1 MASFEKDAATMRVIAELKRLYKTKILPLEQLYKFDVFNSPHLTDAEFDSKPQVMLLGQYSVGKTTFIRYLLGQDFPGQRIGPEPTTDRFTAIIDGPDERVIPGNALAVSHDMPYRGLERFGVAFLNRFEGAQLPNQVLKNITLIDTPGVLSGEKQRVARGYDFCQVCTWFAGRADLIILLFDAHKLDISDEFRNAID 197
[Close]
BLAST of mRNA_P-wetherbeei_contig19339.1.1 vs. uniprot
Match: A0A4D9CZB1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZB1_9STRA)

HSP 1 Score: 315 bits (806), Expect = 1.790e-100
Identity = 146/192 (76.04%), Postives = 171/192 (89.06%), Query Frame = 3 
Query:  255 RDEATKAVIEGLKRLYHTKLKPLEQLYMFDFFHSPLLTDSEFDSKPQVLMIGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGPDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIIDTPGILSGEKQRVARGYDFVNVCHWFAERADLILLLFDAHKLDVSDEFKAAID 830
            RD+AT+ VI+GLK +Y + + PLEQ+YM+D F+SP L+DSEFDSKP V+++GQYSTGKTSFIRYL+GRDFPGQRIGPEPTTDRFVAVMDGP+ERV+PGNA+ V+ NLP+RGLDRFGVSFLN+FE S  PS VLRNI I+DTPG+L+G KQ VARGYDF NVC WFAERADLILLLFDAHKLD+SDEFK  I+
Sbjct:    9 RDQATRRVIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPGNAMAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIE 200
[Close]
BLAST of mRNA_P-wetherbeei_contig19339.1.1 vs. uniprot
Match: A0A7S1XM26_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XM26_9STRA)

HSP 1 Score: 308 bits (790), Expect = 7.860e-100
Identity = 144/196 (73.47%), Postives = 172/196 (87.76%), Query Frame = 3 
Query:  240 MSMADRDEATKAVIEGLKRLYHTKLKPLEQLYMFDFFHSPLLTDSEFDSKPQVLMIGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGPDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIIDTPGILSGEKQRVARGYDFVNVCHWFAERADLILLLFDAHKLDVSDEFKAAI 827
            M+M DRD AT+ VIE LK LY   + P+EQ Y ++ F+SPLLT+SEF+SKPQVLMIGQYSTGKTSFI+Y++GRDFPG R+GPEPTTDRFVAVMDGPDERV+PGNAL V+P+LPY GL ++GV+FLN+FE SQL S VLRNI+I+DTPG+LSGEKQR+ RGYDF  VC WFA+R+DLILLLFDAHKLD+SDEFK+ I
Sbjct:    1 MAMVDRDAATQQVIESLKALYTQYILPVEQQYHYEHFYSPLLTESEFESKPQVLMIGQYSTGKTSFIKYIIGRDFPGIRVGPEPTTDRFVAVMDGPDERVIPGNALAVAPHLPYSGLQQYGVNFLNRFEGSQLSSQVLRNISIVDTPGVLSGEKQRLTRGYDFTEVCQWFAQRSDLILLLFDAHKLDISDEFKSVI 196
[Close]
BLAST of mRNA_P-wetherbeei_contig19339.1.1 vs. uniprot
Match: F0WLM2_9STRA (Uncharacterized protein AlNc14C147G7411 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WLM2_9STRA)

HSP 1 Score: 295 bits (756), Expect = 1.180e-97
Identity = 139/188 (73.94%), Postives = 163/188 (86.70%), Query Frame = 3 
Query:  267 TKAVIEGLKRLYHTKLKPLEQLYMFDFFHSPLLTDSEFDSKPQVLMIGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGPDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIIDTPGILSGEKQRVARGYDFVNVCHWFAERADLILLLFDAHKLDVSDEFKAAID 830
            +K V++GLK+LY  KL+PLE+ Y FD FHSPLL+D++FD+KPQ+LMIGQYS GKTSFI YLLGR FPGQRIGPEPTTDRFVAVM G +ER +PGNA+ VSP+LPY GL  FG +FLNKFEA+QLPS VL NI++IDTPGILSGEKQR+ RGYDFV V  WFAER+DLILLLFDAHKLD+SDEF+  I+
Sbjct:   28 SKVVVDGLKKLYAQKLRPLEKKYEFDEFHSPLLSDADFDAKPQILMIGQYSVGKTSFIEYLLGRSFPGQRIGPEPTTDRFVAVMYGDEERTIPGNAVAVSPDLPYGGLSMFGTAFLNKFEAAQLPSKVLENISVIDTPGILSGEKQRIQRGYDFVQVARWFAERSDLILLLFDAHKLDISDEFQRVIE 215
[Close]
BLAST of mRNA_P-wetherbeei_contig19339.1.1 vs. uniprot
Match: A0A5D6Y7F8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7F8_9STRA)

HSP 1 Score: 300 bits (769), Expect = 1.700e-95
Identity = 143/188 (76.06%), Postives = 165/188 (87.77%), Query Frame = 3 
Query:  267 TKAVIEGLKRLYHTKLKPLEQLYMFDFFHSPLLTDSEFDSKPQVLMIGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGPDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIIDTPGILSGEKQRVARGYDFVNVCHWFAERADLILLLFDAHKLDVSDEFKAAID 830
            +K VIEGLKRLY TKLKPLE+ Y FD FHSPLL+D++FD+KPQVLMIGQYS GKTSFI YLLGR FPGQRIGPEPTTDRFVAVM G +ER VPGNA+ VSP+LP+ GL  FG +FLNKFEA+Q+P  VL NIT++DTPGILSGEKQR+ARGYDFV+V  WFAER+D+ILLLFDAHKLD+SDEF+  I+
Sbjct:   31 SKQVIEGLKRLYATKLKPLEKKYCFDDFHSPLLSDADFDAKPQVLMIGQYSVGKTSFIEYLLGRSFPGQRIGPEPTTDRFVAVMHGDEERTVPGNAVAVSPDLPFGGLSMFGTAFLNKFEAAQVPCRVLENITVVDTPGILSGEKQRIARGYDFVHVAKWFAERSDMILLLFDAHKLDISDEFQRVIE 218
[Close]
BLAST of mRNA_P-wetherbeei_contig19339.1.1 vs. uniprot
Match: A0A024G737_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G737_9STRA)

HSP 1 Score: 297 bits (761), Expect = 2.060e-94
Identity = 141/188 (75.00%), Postives = 163/188 (86.70%), Query Frame = 3 
Query:  267 TKAVIEGLKRLYHTKLKPLEQLYMFDFFHSPLLTDSEFDSKPQVLMIGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGPDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIIDTPGILSGEKQRVARGYDFVNVCHWFAERADLILLLFDAHKLDVSDEFKAAID 830
            +K V++GLK+LY  KL+PLE+ Y FD FHSPLL+D++FD+KPQVLMIGQYS GKTSFI YLLGR FPGQRIGPEPTTDRFVAVM G +ER +PGNA+ VSP+LPY GL  FG +FLNKFEA+QLPS VL NIT+IDTPGILSGEKQR+ RGYDFV V  WFAER+DLILLLFDAHKLD+SDEF+  I+
Sbjct:   41 SKVVVDGLKKLYAQKLRPLEKKYEFDEFHSPLLSDADFDAKPQVLMIGQYSVGKTSFIEYLLGRSFPGQRIGPEPTTDRFVAVMYGDEERTIPGNAVAVSPDLPYGGLSMFGTAFLNKFEAAQLPSKVLENITVIDTPGILSGEKQRIQRGYDFVQVARWFAERSDLILLLFDAHKLDISDEFQRVIE 228
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19339.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G401_ECTSI7.180e-12491.88RME1, RME-1/EHD family ATPase with a C-terminal EH... [more]
A0A835YYV9_9STRA4.950e-12190.36RME1, RME-1/EHD family ATPase with a C-terminal EH... [more]
A0A7S1TT03_9STRA5.380e-10273.47Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A812WW14_SYMMI1.370e-10176.76Ehd1 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A7S3HF70_9STRA1.390e-10074.62Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A4D9CZB1_9STRA1.790e-10076.04Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1XM26_9STRA7.860e-10073.47Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
F0WLM2_9STRA1.180e-9773.94Uncharacterized protein AlNc14C147G7411 n=1 Tax=Al... [more]
A0A5D6Y7F8_9STRA1.700e-9576.06Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A024G737_9STRA2.060e-9475.00Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19339contigP-wetherbeei_contig19339:2..1278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G401
PFAMsDynamin_N,EF-hand_4,EHD_N
Model size830
Max annot lvl2759|Eukaryota
KEGG koko:K12483
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.26e-126
EggNOG OGsKOG1954@1|root,KOG1954@2759|Eukaryota
Descriptionendocytic recycling
Cds size591
COG categoryS
BRITEko00000,ko00001,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186169.9291458-CDS-P-wetherbeei_contig19339:1..261683186169.9291458-CDS-P-wetherbeei_contig19339:1..26Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19339 2..26 -
1683186169.93787-CDS-P-wetherbeei_contig19339:473..10391683186169.93787-CDS-P-wetherbeei_contig19339:473..1039Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19339 474..1039 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186169.954067-UTR-P-wetherbeei_contig19339:1039..12781683186169.954067-UTR-P-wetherbeei_contig19339:1039..1278Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19339 1040..1278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19339.1.1prot_P-wetherbeei_contig19339.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19339 2..1039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19339.1.1

>prot_P-wetherbeei_contig19339.1.1 ID=prot_P-wetherbeei_contig19339.1.1|Name=mRNA_P-wetherbeei_contig19339.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=197bp
MSMADRDEATKAVIEGLKRLYHTKLKPLEQLYMFDFFHSPLLTDSEFDSK
PQVLMIGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGPDERV
VPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIIDTPGIL
SGEKQRVARGYDFVNVCHWFAERADLILLLFDAHKLDVSDEFKAAID
back to top

mRNA from alignment at P-wetherbeei_contig19339:2..1278-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19339.1.1 ID=mRNA_P-wetherbeei_contig19339.1.1|Name=mRNA_P-wetherbeei_contig19339.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1277bp|location=Sequence derived from alignment at P-wetherbeei_contig19339:2..1278- (Phaeothamnion wetherbeei SAG_119_79)
ATAAGCCAGCCTGTGGTCGATCGAGACCTCAAGGCCTCGAGACTCGACTC
GAAGTCGAGTACTCGACCCACGAGACCCATCCCTACCCAACCCCACCCTT
TTACTATCCGGAACACTTGTCTTGCTTCTGTGTGCTCCGCAGCCAGGTCA
CCTCCAAGCGCCTACATTGTGGCGTTCAAAAAATCAAAGTATTCGTCGTT
CTCTTCCCATTTTCTGGTTCTACACACAGCTGAGCCGCCATGTCGATGGC
TGACCGAGATGAGGCCACAAAAGCTGTCATCGAGGGCCTAAAGCGGCTGT
ACCACACCAAGCTGAAGCCCCTTGAGCAGCTTTACATGTTCGACTTCTTC
CACTCGCCGCTCCTCACTGACAGCGAGTTCGACAGCAAGCCGCAGGTGCT
CATGATCGGGCAATACTCGACGGGAAAGACCTCCTTCATTCGGTACCTGC
TCGGCCGCGACTTCCCGGGGCAGCGCATCGGGCCCGAGCCGACGACAGAC
CGCTTCGTCGCCGTCATGGACGGCCCCGACGAGCGCGTCGTCCCGGGAAA
CGCCCTCACAGTGAGCCCCAATCTTCCCTACCGCGGTCTGGACCGCTTTG
GCGTGTCGTTCCTGAACAAGTTCGAGGCGTCGCAGCTGCCGAGCCCCGTG
CTGCGCAACATCACCATCATCGATACGCCAGGCATCCTCTCGGGCGAGAA
GCAGCGTGTCGCGCGCGGCTACGACTTCGTCAACGTCTGCCACTGGTTCG
CCGAGCGGGCCGACCTCATCCTCCTCCTTTTTGACGCCCACAAGCTCGAT
GTCAGGTTGGTCGGTCAGAACAAGAAGGAGAGGGCAAATCTCTAGGCAGG
TTTCTTCTCCGAACTGACCTCATCGGAGAAGTGTATTTTTAATCTCGACA
ATAGAAAAATGTCGATTGAATAACTTCAATGTTTAGAGACAGTTGAGAGC
GACGTTCCTGTAAAGTTGCGCGTCATTCGTTCATTCCTGTGAACCGAGGC
CCTTGGCGGAAGGTTTGTTTTAAAAGAACATTCGTGGTTTGGCTTTGAAG
CCATTCAAGATTCGTGTTCTGAATGAGTTAGTTGTTATATGTCATGTCCT
GCCGGTCTCTGTCGCGTCTTGTCTCGACATCGGCCTGCATCGGCCTGCCT
TCTTTCCGCGTCGGACGCTTTGATGGGCCTCAATGAGTTGGTTCTCAAAG
CGAAACTTCAAAGGTATTGAAACACAATTTGAAACCTTCGATACTGCCGC
AGCGATGAGTTCAAGGCGGCGATCGAT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig19339:2..1278-

>mRNA_P-wetherbeei_contig19339.1.1 ID=mRNA_P-wetherbeei_contig19339.1.1|Name=mRNA_P-wetherbeei_contig19339.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=591bp|location=Sequence derived from alignment at P-wetherbeei_contig19339:2..1278- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGATGGCTGACCGAGATGAGGCCACAAAAGCTGTCATCGAGGGCCT
AAAGCGGCTGTACCACACCAAGCTGAAGCCCCTTGAGCAGCTTTACATGT
TCGACTTCTTCCACTCGCCGCTCCTCACTGACAGCGAGTTCGACAGCAAG
CCGCAGGTGCTCATGATCGGGCAATACTCGACGGGAAAGACCTCCTTCAT
TCGGTACCTGCTCGGCCGCGACTTCCCGGGGCAGCGCATCGGGCCCGAGC
CGACGACAGACCGCTTCGTCGCCGTCATGGACGGCCCCGACGAGCGCGTC
GTCCCGGGAAACGCCCTCACAGTGAGCCCCAATCTTCCCTACCGCGGTCT
GGACCGCTTTGGCGTGTCGTTCCTGAACAAGTTCGAGGCGTCGCAGCTGC
CGAGCCCCGTGCTGCGCAACATCACCATCATCGATACGCCAGGCATCCTC
TCGGGCGAGAAGCAGCGTGTCGCGCGCGGCTACGACTTCGTCAACGTCTG
CCACTGGTTCGCCGAGCGGGCCGACCTCATCCTCCTCCTTTTTGACGCCC
ACAAGCTCGATGTCAGCGATGAGTTCAAGGCGGCGATCGAT
back to top