mRNA_P-wetherbeei_contig19320.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19320.1.1
Unique NamemRNA_P-wetherbeei_contig19320.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19320.1.1 vs. uniprot
Match: UPI00199468AE (tRNA-dihydrouridine synthase n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI00199468AE)

HSP 1 Score: 516 bits (1328), Expect = 1.770e-182
Identity = 256/311 (82.32%), Postives = 280/311 (90.03%), Query Frame = 1
Query:    1 VLRDVLTRVGGIDRCVSEFIRVTGTLLPDRVFTRIVPELEHGGRTPAGVPVRAQLLGSDPVCVAENAAKLAALGPAGIDLNFGCPAKGVNRHRGGAVLLDEPELIAQIVGAVRRAVPREMPVSAKMRLGYNDGARAVECALAIVAGGADEMVVHARTKADGYRPPAYWERIQDIRAAVAIPVIANGEIWSADDALRCREVSGCGALMLGRGIVANPGLALAIRARDRQSARLHKVNDFPAGEAGVSWPALLPFVADFWRIVGAHIAPHHHAGRLKQWLNFLRRRYPEAQQAYAAVRTINDPALVTRQLFAH 933
            VLRD+LTRVGGIDRCVSEFIRVTGTLLPDRVF RIVPEL+HGGRTPAGVPVRAQLLGSDPVC+AENAAKLAALGPAGIDLNFGCPAKGVNRHRGGAVLLDEPELIAQIVGAVR AVPR MPVSAKMRLGYNDG+RA+ECALAI AGGA+E+VVHARTK DGYRPPAYWE IQ++R+AVAIPVIANGEIW+ +DA+RCR +SGC ALMLGRGIVA+PGLALAI+A+DR +          +  +GVSW AL PFVADFW IVG ++APH  AGRLKQWLNFLRRRYPEAQ AYA+VRTINDPALV +QLF H
Sbjct:   14 VLRDILTRVGGIDRCVSEFIRVTGTLLPDRVFLRIVPELDHGGRTPAGVPVRAQLLGSDPVCMAENAAKLAALGPAGIDLNFGCPAKGVNRHRGGAVLLDEPELIAQIVGAVRGAVPRNMPVSAKMRLGYNDGSRALECALAIAAGGAEELVVHARTKVDGYRPPAYWESIQELRSAVAIPVIANGEIWNVEDAMRCRTLSGCNALMLGRGIVADPGLALAIKAQDRDATNFSDPIRADSENSGVSWQALQPFVADFWHIVGTYMAPHQRAGRLKQWLNFLRRRYPEAQAAYASVRTINDPALVEQQLFWH 324          
BLAST of mRNA_P-wetherbeei_contig19320.1.1 vs. uniprot
Match: UPI0010F4B618 (tRNA-dihydrouridine synthase n=1 Tax=Ramlibacter sp. 2FC TaxID=2502188 RepID=UPI0010F4B618)

HSP 1 Score: 444 bits (1141), Expect = 3.290e-154
Identity = 225/309 (72.82%), Postives = 253/309 (81.88%), Query Frame = 1
Query:    4 LRDVLTRVGGIDRCVSEFIRVTGTLLPDRVFTRIVPELEHGGRTPAGVPVRAQLLGSDPVCVAENAAKLAALGPAGIDLNFGCPAKGVNRHRGGAVLLDEPELIAQIVGAVRRAVPREMPVSAKMRLGYNDGARAVECALAIVAGGADEMVVHARTKADGYRPPAYWERIQDIRAAVAIPVIANGEIWSADDALRCREVSGCGALMLGRGIVANPGLALAIRARDRQSARLHKVNDFPAGEAGVSWPALLPFVADFWRIVGAHIAPHHHAGRLKQWLNFLRRRYPEAQQAYAAVRTINDPALVTRQLFA 930
            LRD+LTRVGG+DRCVSEFIRVT TLLP R F R+VPEL +GGRT AGVPVRAQLLGSDP C+AENAA+LA LGPAGIDLNFGCPAK VNRHRGGAVLLDEPELIA+IV AVRRAVP  MPVSAKMRLG++D  RA ECA AI   GADE+VVHARTKA GYRPPAYWERI ++RA V +PV+ANGEIWS  DALRCREVSGC +LMLGRG+V++PGLALAI A+D              G AG++W  LLP VADFWR VG H+A  H AGRLKQWLN+LRRRYPEAQ+A+ A+R +NDPA V + L A
Sbjct:    9 LRDILTRVGGVDRCVSEFIRVTDTLLPARAFVRVVPELANGGRTRAGVPVRAQLLGSDPACLAENAARLAELGPAGIDLNFGCPAKTVNRHRGGAVLLDEPELIARIVAAVRRAVPPHMPVSAKMRLGFDDDRRAEECAEAIAGAGADELVVHARTKAHGYRPPAYWERIAELRARVRLPVVANGEIWSVADALRCREVSGCDSLMLGRGMVSDPGLALAILAQDGAPGTSE-------GRAGLAWQDLLPLVADFWRQVGLHVAARHRAGRLKQWLNYLRRRYPEAQEAFDALRLVNDPARVQQWLCA 310          
BLAST of mRNA_P-wetherbeei_contig19320.1.1 vs. uniprot
Match: A0A2N2RP80_9PROT (tRNA-dihydrouridine(16) synthase n=1 Tax=Betaproteobacteria bacterium HGW-Betaproteobacteria-3 TaxID=2013715 RepID=A0A2N2RP80_9PROT)

HSP 1 Score: 442 bits (1138), Expect = 9.410e-154
Identity = 225/300 (75.00%), Postives = 250/300 (83.33%), Query Frame = 1
Query:    4 LRDVLTRVGGIDRCVSEFIRVTGTLLPDRVFTRIVPELEHGGRTPAGVPVRAQLLGSDPVCVAENAAKLAALGPAGIDLNFGCPAKGVNRHRGGAVLLDEPELIAQIVGAVRRAVPREMPVSAKMRLGYNDGARAVECALAIVAGGADEMVVHARTKADGYRPPAYWERIQDIRAAVAIPVIANGEIWSADDALRCREVSGCGALMLGRGIVANPGLALAIRARDRQSARLHKVNDFPAGEAGVSWPALLPFVADFWRIVGAHIAPHHHAGRLKQWLNFLRRRYPEAQQAYAAVRTINDP 903
            LRD+LTRVGGIDRCVSEFIRVT  LLP+RVFTRIVPEL  GG TPAGVPVR QLLGSDPVC+AENAA+LAALGPAGIDLNFGCPAK VNRHRGGAVLLDEPELIA+IVGAVRRAVP  +PVSAKMRLG+ND +RA+ECA AI   GA E+VVHART+ADGYRPPAYWERI DIR +V IPV+ANGEIW+  DALRCREVSGC ALMLGRG+VANPGLA AIRA       LH      A E  V+W AL P + D+WR++  H+ P H AGRLKQWLNFLRR +P+AQ A+ AVRT+NDP
Sbjct:   16 LRDILTRVGGIDRCVSEFIRVTDQLLPNRVFTRIVPELLRGGCTPAGVPVRPQLLGSDPVCLAENAARLAALGPAGIDLNFGCPAKTVNRHRGGAVLLDEPELIARIVGAVRRAVPANVPVSAKMRLGFNDASRALECAQAIAGAGAGELVVHARTRADGYRPPAYWERIADIRRSVTIPVVANGEIWTVADALRCREVSGCPALMLGRGMVANPGLARAIRAA------LHG-----APEPAVAWHALAPLLDDYWRLLRGHVEPRHRAGRLKQWLNFLRREFPQAQVAWTAVRTVNDP 304          
BLAST of mRNA_P-wetherbeei_contig19320.1.1 vs. uniprot
Match: A0A1P8JSM0_9BURK (tRNA-dihydrouridine(16) synthase n=1 Tax=Rhodoferax koreense TaxID=1842727 RepID=A0A1P8JSM0_9BURK)

HSP 1 Score: 442 bits (1137), Expect = 1.600e-153
Identity = 226/304 (74.34%), Postives = 252/304 (82.89%), Query Frame = 1
Query:    1 VLRDVLTRVGGIDRCVSEFIRVTGTLLPDRVFTRIVPELEHGGRTPAGVPVRAQLLGSDPVCVAENAAKLAALGPAGIDLNFGCPAKGVNRHRGGAVLLDEPELIAQIVGAVRRAVPREMPVSAKMRLGYNDGARAVECALAIVAGGADEMVVHARTKADGYRPPAYWERIQDIRAAVAIPVIANGEIWSADDALRCREVSGCGALMLGRGIVANPGLALAIRARDRQSARLHKVNDFPAGEAGVSWPALLPFVADFWRIVGAHIAPHHHAGRLKQWLNFLRRRYPEAQQAYAAVRTINDPALV 912
            VLRD+LTRVGGIDRCVSEFIRVT TLLPDRVFTR++PELEHGGRT AGVPVRAQLLGSDP  +AENAA+LA LGPAGIDLNFGCPAK VNRH GGA LLDEPEL+A+IV AVRRAVP  MPVSAKMRLG+NDG+RAVECALA+   GA+E+VVHARTKADGYRPPAYWERI++IRAAVA+PV+ANGEIW+ DDALRCR  SG   LM+GRG+VA+PGLALAIR  D            PA E  V+WP LLP V DFWR+V A + P   AGRLKQWLNFLRRRYPEA+ AY A+RT  D A +
Sbjct:   26 VLRDILTRVGGIDRCVSEFIRVTNTLLPDRVFTRVIPELEHGGRTFAGVPVRAQLLGSDPGWLAENAARLARLGPAGIDLNFGCPAKVVNRHGGGAALLDEPELVARIVAAVRRAVPAGMPVSAKMRLGFNDGSRAVECALAMAGNGAEELVVHARTKADGYRPPAYWERIREIRAAVAVPVVANGEIWTVDDALRCRAASGSSQLMIGRGMVADPGLALAIRRHDDLGLA-------PA-EPVVAWPGLLPLVRDFWRLVCARLEPKQRAGRLKQWLNFLRRRYPEAEAAYLALRTETDEARI 321          
BLAST of mRNA_P-wetherbeei_contig19320.1.1 vs. uniprot
Match: A0A7Y0BIL5_9BURK (tRNA-dihydrouridine(16) synthase n=1 Tax=Polaromonas sp. TaxID=1869339 RepID=A0A7Y0BIL5_9BURK)

HSP 1 Score: 440 bits (1132), Expect = 1.140e-152
Identity = 228/316 (72.15%), Postives = 251/316 (79.43%), Query Frame = 1
Query:    1 VLRDVLTRVGGIDRCVSEFIRVTGTLLPDRVFTRIVPELEHGGRTPAGVPVRAQLLGSDPVCVAENAAKLAALGPAGIDLNFGCPAKGVNRHRGGAVLLDEPELIAQIVGAVRRAVPREMPVSAKMRLGYNDGARAVECALAIVAGGADEMVVHARTKADGYRPPAYWERIQDIRAAVAIPVIANGEIWSADDALRCREVSGCGALMLGRGIVANPGLALAIRARDRQSARLHKVNDFPAGEAGVSWPALLPFVADFWRIVGAHIAPHHHAGRLKQWLNFLRRRYPEAQQAYAAVRTINDPALVTRQLFAHADAQF 948
            VLRD+LTRVGGIDRCVSEFIR+T  LLP+RVFTRIVPEL  GGRT AGVPVRAQLLGSD VC+AENAA+LA LGPAGIDLNFGCPAK VNRH GGA LLDEPE IA IV AVRRAVP  MPVSAKMRLGYND +RAVECALAI  GGADE+VVHARTKA  YRPPAYW RI DIRAAV IPV+ANGEIW+ DDA RCRE SGC  LMLGRG+V +PGL LAI+A    SA+        A  AG++WP LLP +A+FWR+V   +     AGRLKQWLNFLRRR+PEA+ AY  +RTINDPAL+   L     AQF
Sbjct:   15 VLRDILTRVGGIDRCVSEFIRITDQLLPERVFTRIVPELHTGGRTLAGVPVRAQLLGSDAVCLAENAARLAGLGPAGIDLNFGCPAKIVNRHGGGASLLDEPETIAAIVSAVRRAVPAGMPVSAKMRLGYNDDSRAVECALAIAEGGADELVVHARTKAQAYRPPAYWGRIADIRAAVKIPVVANGEIWTLDDARRCREASGCDMLMLGRGVVTDPGLGLAIKASMHGSAK--------AASAGIAWPELLPLLAEFWRVVCTRLDVRSRAGRLKQWLNFLRRRFPEAETAYQQLRTINDPALIDVWLAGVLQAQF 322          
BLAST of mRNA_P-wetherbeei_contig19320.1.1 vs. uniprot
Match: UPI0019B10A7C (tRNA-dihydrouridine synthase n=2 Tax=Proteobacteria TaxID=1224 RepID=UPI0019B10A7C)

HSP 1 Score: 440 bits (1132), Expect = 2.550e-152
Identity = 221/307 (71.99%), Postives = 252/307 (82.08%), Query Frame = 1
Query:    4 LRDVLTRVGGIDRCVSEFIRVTGTLLPDRVFTRIVPELEHGGRTPAGVPVRAQLLGSDPVCVAENAAKLAALGPAGIDLNFGCPAKGVNRHRGGAVLLDEPELIAQIVGAVRRAVPREMPVSAKMRLGYNDGARAVECALAIVAGGADEMVVHARTKADGYRPPAYWERIQDIRAAVAIPVIANGEIWSADDALRCREVSGCGALMLGRGIVANPGLALAIRARDRQSARLHKVNDFPAGEAGVSWPALLPFVADFWRIVGAHIAPHHHAGRLKQWLNFLRRRYPEAQQAYAAVRTINDPALVTRQL 924
            LRD+LTR GG+DRCVSEFIRVTGTLLPDRVFTR+VPEL HG RTPAGVPVR QL+GSD VC+AENAAKLAAL PAGIDLNFGCPAK VNRH GGA LLD+P+L+A+IVGAVRRAVP ++PVSAKMRLG ND +RA+ECALAI + GADE+VVHARTK DGYRPPAYWE I  IRAAVAIPVIANGEIWS  DA RCREVSGC ALM+GRG+V +PGLA AI+A    +A L   +   A   G+ W  LLP + DFWR+V AHI P   AGRLKQWLN+LRRR+P+A+ A+A VRT+N+P  V   L
Sbjct:   16 LRDILTRTGGVDRCVSEFIRVTGTLLPDRVFTRVVPELNHGSRTPAGVPVRPQLMGSDAVCLAENAAKLAALRPAGIDLNFGCPAKIVNRHGGGAALLDDPDLLARIVGAVRRAVPADVPVSAKMRLGVNDASRAIECALAIESSGADELVVHARTKLDGYRPPAYWEHIAGIRAAVAIPVIANGEIWSVADAQRCREVSGCDALMIGRGMVCDPGLAWAIKA----NAALPTGDRIDAAAVGLPWHELLPLIRDFWRLVAAHIEPRARAGRLKQWLNYLRRRHPQAEAAFALVRTVNEPLRVLELL 318          
BLAST of mRNA_P-wetherbeei_contig19320.1.1 vs. uniprot
Match: A0A519G4V9_9BURK (tRNA-dihydrouridine(16) synthase n=1 Tax=Rubrivivax sp. TaxID=50259 RepID=A0A519G4V9_9BURK)

HSP 1 Score: 437 bits (1125), Expect = 6.720e-152
Identity = 217/308 (70.45%), Postives = 249/308 (80.84%), Query Frame = 1
Query:    4 LRDVLTRVGGIDRCVSEFIRVTGTLLPDRVFTRIVPELEHGGRTPAGVPVRAQLLGSDPVCVAENAAKLAALGPAGIDLNFGCPAKGVNRHRGGAVLLDEPELIAQIVGAVRRAVPREMPVSAKMRLGYNDGARAVECALAIVAGGADEMVVHARTKADGYRPPAYWERIQDIRAAVAIPVIANGEIWSADDALRCREVSGCGALMLGRGIVANPGLALAIRARDRQSARLHKVNDFPAGEAGVSWPALLPFVADFWRIVGAHIAPHHHAGRLKQWLNFLRRRYPEAQQAYAAVRTINDPALVTRQLF 927
            LRD+LTRVGGIDRCVSEFIRVTGTLLPDRVFTRIVPEL +GGRTPAGVPVRAQL+GSDP+C+AENA KLAALGPAGIDLNFGCPAK VNRH GGA LL +PEL+A IV AVRRAVP  MPVSAKMRLG+ND + A++CA AI +GGA+E+VVHART+AD YRPPAYWER+ DIR AV IPV+ANGEIW+ADDA RCRE SGC ALM+GRGIV +PGLAL I                  G  GV+WPALLP V +FW+++ AHI P   AGRLKQWLNFLRR +PEA++ Y  VR +ND  +V + +F
Sbjct:   16 LRDILTRVGGIDRCVSEFIRVTGTLLPDRVFTRIVPELNNGGRTPAGVPVRAQLMGSDPICLAENAGKLAALGPAGIDLNFGCPAKVVNRHGGGAALLQDPELLATIVSAVRRAVPAGMPVSAKMRLGFNDDSLAIDCAQAIESGGAEELVVHARTRADAYRPPAYWERVADIREAVRIPVVANGEIWNADDARRCREASGCHALMVGRGIVVDPGLALRIAV---------------PGHQGVAWPALLPLVFEFWKLIEAHIEPRARAGRLKQWLNFLRRHHPEAEEIYMRVRVLNDSRVVAQSVF 308          
BLAST of mRNA_P-wetherbeei_contig19320.1.1 vs. uniprot
Match: UPI0019BBDB9A (tRNA-dihydrouridine synthase n=1 Tax=Polaromonas sp. TaxID=1869339 RepID=UPI0019BBDB9A)

HSP 1 Score: 436 bits (1122), Expect = 3.640e-151
Identity = 228/320 (71.25%), Postives = 252/320 (78.75%), Query Frame = 1
Query:    1 VLRDVLTRVGGIDRCVSEFIRVTGTLLPDRVFTRIVPELEHGGRTPAGVPVRAQLLGSDPVCVAENAAKLAALGPAGIDLNFGCPAKGVNRHRGGAVLLDEPELIAQIVGAVRRAVPREMPVSAKMRLGYNDGARAVECALAIVAGGADEMVVHARTKADGYRPPAYWERIQDIRAAVAIPVIANGEIWSADDALRCREVSGCGALMLGRGIVANPGLALAIRARDRQSARLHKVNDFPAGEAGVSWPALLPFVADFWRIVGAHIAPHHHAGRLKQWLNFLRRRYPEAQQAYAAVRTINDPALVTRQLFAHADAQFPVAP 960
            VLRDVLTRVGGIDRCVSEFIRVT  LLP+RVFTRIVPEL +GGRT AGVPVRAQLLGSDPVC+AENA +LA LGPAGIDLNFGCPA  VNRH GGA LLDEP+ +A IV AVRRAVP  MPVSAKMRLG+ND +RAVECALAI  GGADE+VVHARTKA  YRPPAYWERI DIRAAV IPV+ANGEIW+ DDA RCR+ SGC +LMLGRG V +PGL LAI+A    +A        PA    V WP L+P +A+FWRIV A +     AGRLKQWLNFLRRR+PEA+ AY  +RTINDPAL+   L A   AQ P  P
Sbjct:   15 VLRDVLTRVGGIDRCVSEFIRVTDQLLPERVFTRIVPELLNGGRTLAGVPVRAQLLGSDPVCLAENAGRLAGLGPAGIDLNFGCPANVVNRHGGGAALLDEPDTLAAIVAAVRRAVPAHMPVSAKMRLGFNDDSRAVECALAIAGGGADELVVHARTKAQAYRPPAYWERIADIRAAVRIPVVANGEIWTVDDARRCRQASGCESLMLGRGAVTDPGLGLAIKASMGGAA-------MPA----VGWPQLMPLLAEFWRIVCARLDARARAGRLKQWLNFLRRRFPEAESAYQQLRTINDPALIDAWLAALLRAQAPAGP 323          
BLAST of mRNA_P-wetherbeei_contig19320.1.1 vs. uniprot
Match: UPI0009FCB08A (tRNA-dihydrouridine synthase n=1 Tax=Polaromonas jejuensis TaxID=457502 RepID=UPI0009FCB08A)

HSP 1 Score: 435 bits (1119), Expect = 1.830e-150
Identity = 222/316 (70.25%), Postives = 250/316 (79.11%), Query Frame = 1
Query:    1 VLRDVLTRVGGIDRCVSEFIRVTGTLLPDRVFTRIVPELEHGGRTPAGVPVRAQLLGSDPVCVAENAAKLAALGPAGIDLNFGCPAKGVNRHRGGAVLLDEPELIAQIVGAVRRAVPREMPVSAKMRLGYNDGARAVECALAIVAGGADEMVVHARTKADGYRPPAYWERIQDIRAAVAIPVIANGEIWSADDALRCREVSGCGALMLGRGIVANPGLALAIRARDRQSARLHKVNDFPAGEAGVSWPALLPFVADFWRIVGAHIAPHHHAGRLKQWLNFLRRRYPEAQQAYAAVRTINDPALVTRQLFAHADAQF 948
            VLRD+LTRVGGIDRCVSEFIR+T  LLP+RVFTRIVPEL  GGRT AGVPVRAQLLGSDPVC+AENAA+LA LGPAGIDLNFGCPAK VNRH GGA+LL+ PE +  IV AVRRAVP  MPVSAKMRLG+ND +RAVECALAI  GGADE+VVHARTKA  Y+PPAYWERI DIR  V IPV+ANGEIW+ DDA RCRE SGC +LMLGRG+V +PGL LAI+A     A     +  PAG AGVSWPA++P +ADFW IV   +     AGRLKQWLNFLRRR+PEA+ AY  ++TINDP L+   L     AQ 
Sbjct:   15 VLRDILTRVGGIDRCVSEFIRITDQLLPERVFTRIVPELHTGGRTFAGVPVRAQLLGSDPVCLAENAARLAGLGPAGIDLNFGCPAKVVNRHGGGALLLEAPETLLAIVSAVRRAVPAHMPVSAKMRLGFNDDSRAVECALAIADGGADELVVHARTKAQAYKPPAYWERIADIREVVNIPVVANGEIWTVDDARRCREASGCDSLMLGRGMVTDPGLGLAIKASMNGLAG----SPAPAGHAGVSWPAMVPLLADFWHIVCTRLDTRSRAGRLKQWLNFLRRRFPEAETAYQLLKTINDPVLIDEWLAGVVQAQL 326          
BLAST of mRNA_P-wetherbeei_contig19320.1.1 vs. uniprot
Match: A1VLT9_POLNA (tRNA-dihydrouridine(16) synthase n=7 Tax=Polaromonas TaxID=52972 RepID=A1VLT9_POLNA)

HSP 1 Score: 432 bits (1111), Expect = 9.380e-150
Identity = 218/304 (71.71%), Postives = 244/304 (80.26%), Query Frame = 1
Query:    1 VLRDVLTRVGGIDRCVSEFIRVTGTLLPDRVFTRIVPELEHGGRTPAGVPVRAQLLGSDPVCVAENAAKLAALGPAGIDLNFGCPAKGVNRHRGGAVLLDEPELIAQIVGAVRRAVPREMPVSAKMRLGYNDGARAVECALAIVAGGADEMVVHARTKADGYRPPAYWERIQDIRAAVAIPVIANGEIWSADDALRCREVSGCGALMLGRGIVANPGLALAIRARDRQSARLHKVNDFPAGEAGVSWPALLPFVADFWRIVGAHIAPHHHAGRLKQWLNFLRRRYPEAQQAYAAVRTINDPALV 912
            VLRD+LTRVGGIDRCVSEFIR+T  LLP+RVFTRIVPEL +GGRT AGVPVRAQLLGSDPVC+AENA +LA LGPAGIDLNFGCPAK VNRH GGA LLDEPE +  IV AVRRAVP  MPVSAKMRLG+ND +RAVECALAI   GADE+VVHARTKA  YRPPAYWERI DIRAAV IPV+ANGEIW+ DDA RCRE SGC +LMLGRG+V +PGL LAI+A    +A            AGV+WP L+P +A FW IV   +     AGRLKQWLNFLRRR+PEA+ AY  +RT+NDPAL+
Sbjct:   14 VLRDILTRVGGIDRCVSEFIRITDQLLPERVFTRIVPELHNGGRTLAGVPVRAQLLGSDPVCLAENAGRLAELGPAGIDLNFGCPAKIVNRHGGGAALLDEPETVFAIVAAVRRAVPNHMPVSAKMRLGFNDDSRAVECALAIAGAGADELVVHARTKAQAYRPPAYWERIADIRAAVRIPVVANGEIWTVDDARRCREASGCESLMLGRGVVTDPGLGLAIKAAMNGAA----------SPAGVAWPQLVPLLAQFWHIVCTRLDARSRAGRLKQWLNFLRRRFPEAEIAYQQIRTVNDPALI 307          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19320.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00199468AE1.770e-18282.32tRNA-dihydrouridine synthase n=1 Tax=Prolixibacter... [more]
UPI0010F4B6183.290e-15472.82tRNA-dihydrouridine synthase n=1 Tax=Ramlibacter s... [more]
A0A2N2RP80_9PROT9.410e-15475.00tRNA-dihydrouridine(16) synthase n=1 Tax=Betaprote... [more]
A0A1P8JSM0_9BURK1.600e-15374.34tRNA-dihydrouridine(16) synthase n=1 Tax=Rhodofera... [more]
A0A7Y0BIL5_9BURK1.140e-15272.15tRNA-dihydrouridine(16) synthase n=1 Tax=Polaromon... [more]
UPI0019B10A7C2.550e-15271.99tRNA-dihydrouridine synthase n=2 Tax=Proteobacteri... [more]
A0A519G4V9_9BURK6.720e-15270.45tRNA-dihydrouridine(16) synthase n=1 Tax=Rubriviva... [more]
UPI0019BBDB9A3.640e-15171.25tRNA-dihydrouridine synthase n=1 Tax=Polaromonas s... [more]
UPI0009FCB08A1.830e-15070.25tRNA-dihydrouridine synthase n=1 Tax=Polaromonas j... [more]
A1VLT9_POLNA9.380e-15071.71tRNA-dihydrouridine(16) synthase n=7 Tax=Polaromon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19320contigP-wetherbeei_contig19320:319..1293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog365044.Pnap_1302
Preferred namedusC
PFAMsDus
Model size975
Max annot lvl28216|Betaproteobacteria
KEGG koko:K05541
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.54e-150
EggNOG OGsCOG0042@1|root,COG0042@2|Bacteria,1MUSM@1224|Proteobacteria,2VHWD@28216|Betaproteobacteria,4AC6S@80864|Comamonadaceae
Ec32 ortholog descriptiontRNA-dihydrouridine synthase
Ec32 orthologEc-18_002590.2
DescriptionCatalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs
Cds size975
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186169.6724815-CDS-P-wetherbeei_contig19320:318..12931683186169.6724815-CDS-P-wetherbeei_contig19320:318..1293Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19320 319..1293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19320.1.1prot_P-wetherbeei_contig19320.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19320 319..1293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19320.1.1

>prot_P-wetherbeei_contig19320.1.1 ID=prot_P-wetherbeei_contig19320.1.1|Name=mRNA_P-wetherbeei_contig19320.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=325bp
VLRDVLTRVGGIDRCVSEFIRVTGTLLPDRVFTRIVPELEHGGRTPAGVP
VRAQLLGSDPVCVAENAAKLAALGPAGIDLNFGCPAKGVNRHRGGAVLLD
EPELIAQIVGAVRRAVPREMPVSAKMRLGYNDGARAVECALAIVAGGADE
MVVHARTKADGYRPPAYWERIQDIRAAVAIPVIANGEIWSADDALRCREV
SGCGALMLGRGIVANPGLALAIRARDRQSARLHKVNDFPAGEAGVSWPAL
LPFVADFWRIVGAHIAPHHHAGRLKQWLNFLRRRYPEAQQAYAAVRTIND
PALVTRQLFAHADAQFPVAPRLAA*
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mRNA from alignment at P-wetherbeei_contig19320:319..1293-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19320.1.1 ID=mRNA_P-wetherbeei_contig19320.1.1|Name=mRNA_P-wetherbeei_contig19320.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=975bp|location=Sequence derived from alignment at P-wetherbeei_contig19320:319..1293- (Phaeothamnion wetherbeei SAG_119_79)
GTGCTGCGCGACGTGCTGACGCGCGTGGGCGGCATCGATCGCTGCGTGTC GGAATTCATCCGTGTCACCGGCACCCTGCTGCCCGACCGCGTATTCACGC GCATCGTGCCCGAACTCGAACATGGCGGGCGCACGCCCGCCGGCGTGCCG GTGCGTGCGCAGTTGCTCGGCTCCGACCCGGTGTGCGTGGCGGAGAACGC GGCGAAACTCGCCGCGCTCGGGCCGGCCGGCATTGACCTGAATTTCGGCT GTCCGGCGAAGGGCGTGAACCGCCATCGTGGCGGCGCGGTGCTGCTCGAC GAGCCCGAACTCATTGCGCAGATCGTGGGCGCGGTGCGTCGCGCGGTGCC GCGCGAGATGCCGGTCTCGGCCAAGATGCGGCTCGGCTACAACGACGGCG CGCGCGCGGTGGAATGCGCGCTCGCCATTGTTGCGGGCGGCGCCGATGAA ATGGTCGTGCATGCTCGCACCAAGGCCGACGGCTACCGGCCGCCCGCCTA TTGGGAGCGCATCCAGGACATTCGCGCGGCAGTTGCGATTCCGGTGATCG CCAACGGCGAAATCTGGAGCGCCGATGATGCCTTGCGCTGCCGTGAAGTC TCTGGATGCGGCGCGCTGATGCTCGGTCGCGGCATCGTCGCCAACCCCGG CCTGGCGCTGGCCATCCGCGCGCGCGACCGGCAGTCTGCAAGATTGCACA AAGTGAATGATTTCCCGGCAGGCGAGGCTGGCGTAAGCTGGCCGGCGCTG CTGCCCTTCGTGGCGGATTTCTGGCGCATCGTCGGCGCGCACATAGCGCC GCATCATCATGCGGGCCGGCTCAAGCAATGGCTTAATTTCCTGCGTCGTC GCTACCCGGAAGCGCAGCAGGCCTATGCAGCCGTGCGCACGATCAACGAT CCGGCGCTGGTTACCAGGCAACTGTTCGCGCACGCCGACGCGCAATTTCC CGTTGCGCCACGGCTCGCCGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19320:319..1293-

>mRNA_P-wetherbeei_contig19320.1.1 ID=mRNA_P-wetherbeei_contig19320.1.1|Name=mRNA_P-wetherbeei_contig19320.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=975bp|location=Sequence derived from alignment at P-wetherbeei_contig19320:319..1293- (Phaeothamnion wetherbeei SAG_119_79)
GTGCTGCGCGACGTGCTGACGCGCGTGGGCGGCATCGATCGCTGCGTGTC
GGAATTCATCCGTGTCACCGGCACCCTGCTGCCCGACCGCGTATTCACGC
GCATCGTGCCCGAACTCGAACATGGCGGGCGCACGCCCGCCGGCGTGCCG
GTGCGTGCGCAGTTGCTCGGCTCCGACCCGGTGTGCGTGGCGGAGAACGC
GGCGAAACTCGCCGCGCTCGGGCCGGCCGGCATTGACCTGAATTTCGGCT
GTCCGGCGAAGGGCGTGAACCGCCATCGTGGCGGCGCGGTGCTGCTCGAC
GAGCCCGAACTCATTGCGCAGATCGTGGGCGCGGTGCGTCGCGCGGTGCC
GCGCGAGATGCCGGTCTCGGCCAAGATGCGGCTCGGCTACAACGACGGCG
CGCGCGCGGTGGAATGCGCGCTCGCCATTGTTGCGGGCGGCGCCGATGAA
ATGGTCGTGCATGCTCGCACCAAGGCCGACGGCTACCGGCCGCCCGCCTA
TTGGGAGCGCATCCAGGACATTCGCGCGGCAGTTGCGATTCCGGTGATCG
CCAACGGCGAAATCTGGAGCGCCGATGATGCCTTGCGCTGCCGTGAAGTC
TCTGGATGCGGCGCGCTGATGCTCGGTCGCGGCATCGTCGCCAACCCCGG
CCTGGCGCTGGCCATCCGCGCGCGCGACCGGCAGTCTGCAAGATTGCACA
AAGTGAATGATTTCCCGGCAGGCGAGGCTGGCGTAAGCTGGCCGGCGCTG
CTGCCCTTCGTGGCGGATTTCTGGCGCATCGTCGGCGCGCACATAGCGCC
GCATCATCATGCGGGCCGGCTCAAGCAATGGCTTAATTTCCTGCGTCGTC
GCTACCCGGAAGCGCAGCAGGCCTATGCAGCCGTGCGCACGATCAACGAT
CCGGCGCTGGTTACCAGGCAACTGTTCGCGCACGCCGACGCGCAATTTCC
CGTTGCGCCACGGCTCGCCGCCTGA
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