mRNA_P-wetherbeei_contig1932.3.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1932.3.3 vs. uniprot
Match: D8LSB0_ECTSI (DNA-directed primase/polymerase protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSB0_ECTSI) HSP 1 Score: 195 bits (496), Expect = 5.860e-47 Identity = 204/663 (30.77%), Postives = 259/663 (39.06%), Query Frame = 3
Query: 516 HWYELIREHEPCCMYFDLEFGRRLNPGLDGDALVRLWIAAVAAKLRRDLGIELGTGASSIVDLDSSTDAKFSRHVILHMPDGRLFRDNVHVGRFVHQLVAELQ---------TAADAPAVGNGDDVCPANIGGDLSGIGAVSAAAADAAGAVVNEXXXXXXXXXXDAAGVGDGCCSAATGPTDEGMGPPEGQTPLFTVTVAPSADDGDAPGEPCGLKAIEAAFLTPRAMVDSLSPQTFLTPKALREASIDADGASSAMKGFEGVTASETVQAALKQLWVRTDRGI-AFFADTSVYSRNRCFRLLGSCKYGKTAVLKQALGCSDRRSGD----AGNGGGRNTHDGSCGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXGIGVFLEAREK----------LLLDSLVVPVGAPPLPLGKLLTVVGPSCLTRL-RLGAPPRDRRSGGGRSGSDNADXXXXXXXXXXXXASRGP--GGS---AIGRSTHSTARVGGHG-ASSPFPSLDAFVLSQARRGGVQGEIRAWHYRPG--------------------------SGIV------------------TYEMTKNRFCRNNGRPHRSNNVLFEADLRAGALFQRCHDSQCRAAGFRSEAMPLPPLALPSPAVLAELDFEATLAEAMRRDNFDPGKW 2279
H YE+IRE PC MYFDLEF R NPGLDG+ LV WI VA KL ++ G+ +GT S+++DLDSST KFSRH+I H+P +LF DN HVGRFV+ L AEL+ T A P +G DD+ P A +AAA V+ AG GD G T P P+ TV AP AL++LWV+ G FAD SVY+RNRCFRLLGS K+GK A L+ A +++R+ D G GGG S L RE+ LL DSLVVPV P LTV G + R R G+ + G S A RG G S G S RV G SPFP++D+F+ + +GG +GE+R W Y G +G+V T+++ NR+C N GR H+SN+V DL G + Q CHD +CR +G+RS + LP P L + E LA AMR P W
Sbjct: 697 HMYEIIREGRPCRMYFDLEFARGPNPGLDGEELVCAWINVVAGKLHQEFGVSVGT--SNVLDLDSSTPKKFSRHLIFHLPGDQLFLDNSHVGRFVNSLAAELESWRAPQSPSTPATPPGIGR-DDIVPT----------ATAAAAVAVPHCVIRSGGGN--------AGGGD-----HLGGTPSSDDFPTSAVPVPTVATAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------ALERLWVKDGDGRRVLFADVSVYTRNRCFRLLGSSKFGKAACLRVAA--TNKRTLDHMVWRGRGGGTFARTSS---------------------------------SSLLSPREQKQQLRDVARTLLHDSLVVPVTPRSSPAELFLTVGGGTGQHRYSRFGSCRKQT----GDCSSSQQRQQHGWSTNGTISAERGEHRGSSQDHGSGSSDGDGWRVSSQGFGPSPFPAVDSFLRTLVGQGGTRGELRQWSYTAGQVPPRTVEHDHQEXXXXXXXXXXAGGTGLVSPGSQSAPQPPATVVRKLTHQVANNRWCWNIGRAHKSNHVFLVTDLSRGEVRQHCHDQECRRSGYRSNPVRLPIGVAPLEDDLEAFELELGLAAAMRE---SPADW 1264
BLAST of mRNA_P-wetherbeei_contig1932.3.3 vs. uniprot
Match: A0A835YVT3_9STRA (DNA-directed primase/polymerase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVT3_9STRA) HSP 1 Score: 135 bits (341), Expect = 2.010e-29 Identity = 87/218 (39.91%), Postives = 119/218 (54.59%), Query Frame = 3
Query: 264 LPRVLSNLHERFA---RTRWQESRGETFPRQELAFARFDELLLQASEPV-----------HFYKIMAYELAGGGRRGYAVVDMRRFAPHYL--TSNPVD--NHWYELIREHEPCCMYFDLEFGRRLNPGLDGDALVRLWIAAVAAKLRRDLGIELGTGASSIVDLDSSTDAKFSRHVILHMPDGRLFRDNVHVGRFVHQLVAE-------LQTAADAP 842
LP + + +R A RT ++ + FP+Q+LAF D++ + ++++ E++ G R Y V + F Y+ T +P +HWYE+IRE PC +YFD+EF R NP LDGDALVR W+ AV AKL D G + + IV LDS+T+ KFSRHVILH+ GRLF NVH G V+QL+ E TAA AP
Sbjct: 100 LPPFMHAVKKRTALDARTAKEKRAYKVFPKQDLAFEHQDKITSASQAEAGSQSQSTAGQQRSTRVLSQEVSSKGGRQYVVWEWAAFERWYVRRTLDPKGKRSHWYEVIREGMPCRLYFDMEFSREANPTLDGDALVRRWLDAVQAKLLHDHGATVES--DGIVQLDSTTERKFSRHVILHLEGGRLFASNVHAGHLVNQLLGEQLLAHAKATTAAAAP 315
BLAST of mRNA_P-wetherbeei_contig1932.3.3 vs. uniprot
Match: C3YHN8_BRAFL (DNA-directed primase/polymerase protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YHN8_BRAFL) HSP 1 Score: 132 bits (332), Expect = 1.170e-27 Identity = 159/623 (25.52%), Postives = 223/623 (35.79%), Query Frame = 3
Query: 336 FPRQELAFARFDELLLQASEPVHFYKIMAYELAGGGRRGYAVVDMRRFAPHYLTSNP-VDNHWYELIREHEPCCMYFDLEFGRRLNPGLDGDALVRLWIAAVAAKLRRDLGIELGTGASSIVDLDSSTDAKFSRHVILHMPDGRLFRDNVHVGRFVHQLVAELQTAADAPAVGNGDDVCPANIGGDLSGIGAVSAAAADAAGAVVNEXXXXXXXXXXDAAGVGDGCCSAATGPTDEGMGPPEGQTPLFTVTVAPSADDGDAPGEPCGLKAIEAAFLTPRAMVDSLSPQTFLTPKALREASIDADGASSAMKGFEGVTASETVQAALKQLWVRTDRGI-AFFADTSVYSRNRCFRLLGSCKYGKTAVLKQALGCSDRRSGDAGNGGGRNTHDGSCGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXGIGVFLEAREKLLLDSLVVPVGAPPLPLGKLLTVVGPSCLTRLRLGAPPRDRRSGGGRSGSDNADXXXXXXXXXXXXASRGPGGSAIGRSTHSTARVGGHGASSPFPSLDAFVLSQARRGGVQGEIRAWHYRPGSGIVTYEMTKNRFCRNNGRPHRSNNVLFEADLRAGALFQRCHDSQCRAAGFRSEAMPLPPLALPS 2198
FPRQ+LAF + + VH + + G+R Y V +F Y +P +D H+YE+I E C +YFDLEF + +NPG DG A+V+ I V L++ L ++DL+SST+ KFS H+I H+P G F+DN+H G FVHQ+ +L + + GD A + E P L V+ G F D VY++NR FRL S K G+ A L A C + GG+ + + S XX +++ L+SLV V P L L G S R+R SG G D ST ++ G +SSP+P +DA+V+ QA RGGV G IR W Y ++ Y++ NR+C N GR HRSN+V+F ADL+ L+Q+CHD CRA ++S PLP LP+
Sbjct: 57 FPRQKLAF----DFARCCKQDVHVFACEVEGESENGQRRYLVTTYEQFWDMYSVLHPNMDGHFYEVIPEGATCHLYFDLEFSKVVNPGSDGVAMVQTLIRCVWWLLKKKYN--LTCTEDHVLDLESSTEEKFSHHLIFHLP-GAAFQDNIHAGNFVHQMCEKLHLCTEQQSPLAGD--------------------------AELQELREA---------------------------------VPGLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVVKNKAGERVLFIDAGVYTKNRNFRLYQSTKLGRRAPLLVAPQCKYKL-----REGGKVSWEES----------------------------KXXXXXXXXXXDKQVFLESLVSNVRFSP-ELRVLRCEEGNSSSGRVRT-----SHESGDNSRGRD---------------------------STTRDDQLSGC-SSSPYPEVDAYVVLQASRGGVHGGIRQWTYFSQGEVLMYDIVHNRWCENIGRAHRSNHVMFVADLKRQVLYQKCHDPVCRAQNYKSPDRPLPAEVLPA 546
BLAST of mRNA_P-wetherbeei_contig1932.3.3 vs. uniprot
Match: UPI0013905510 (DNA-directed primase/polymerase protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013905510) HSP 1 Score: 130 bits (326), Expect = 1.190e-27 Identity = 73/164 (44.51%), Postives = 97/164 (59.15%), Query Frame = 3
Query: 330 ETFPRQELAFARFDELLLQASEPVHFYKIMAYELAGGGRRGYAVVDMRRFAPHYLTSNPVDNHWYELIREHEPCCMYFDLEFGRRLNPGLDGDALVRLWIAAVAAKLRRDLGIELGTGASSIVDLDSSTDAKFSRHVILHMPDGRLFRDNVHVGRFVHQLVAEL 821
+ FPRQ+LAF + + SE VH + A EL G+R Y V + F Y + D H+YE+I E C +YFDLEF R N L+G +V ++I V + L+ GI+ I+DLDSSTD KFSRH+I HMP G +F+DNVH G FVHQ+ +EL
Sbjct: 59 KVFPRQQLAF----DFVKSCSEDVH---VFAEELGDDGKRQYIVSTLDEFWNTYRSIQAEDRHYYEVIEEGAACRLYFDLEFKREFNQDLNGPEMVEIFIEYVCSHLKESFGIDCRR--KHILDLDSSTDTKFSRHLIFHMP-GAVFKDNVHAGNFVHQICSEL 212
BLAST of mRNA_P-wetherbeei_contig1932.3.3 vs. uniprot
Match: A0A1D1ZUK7_AUXPR (DNA-directed primase/polymerase protein n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZUK7_AUXPR) HSP 1 Score: 130 bits (327), Expect = 1.780e-27 Identity = 82/232 (35.34%), Postives = 120/232 (51.72%), Query Frame = 3
Query: 213 PGAAYCHPAA-------IGASTDGLPRVLSNLHERFARTRWQESR-GETFPRQELAFARFDELLLQASEPVHFYKIMAYELAGGGRRGYAVVDMRRFAPHYLTSNPVDNHWYELIREHEPCCMYFDLEFGRRLNPGLDGDALVRLWIAAVAAKLRRDLGIELGTGASSIVDLDSSTDAKFSRHVILHMPDGRLFRDNVHVGRFVHQLVAE---------LQTAADAPAVGNG 857
PG+ C PA + A + + R L+ +H R + E+ FP Q+ A D L +Q P+ ++ + E +G G+R + V + F Y P H+YE+IRE +PC +YFDLEF R LNP DG A ++ + A++ L+ +LG+ L + +V+LDSST +KFSRH+IL +P G F N HVG V QL A L AD+P + G
Sbjct: 68 PGSTLCLPATSFYAKSKLDAVEERILRFLTRVHVRHKQPEAVEAEIWHVFPTQQAAIDCADGLNVQRGSPLERTRVWSMETSGDGKRRFLVSTVTNFYRRYSDMLPHHRHYYEIIREGQPCHIYFDLEFSRALNPDKDGPAAIQSLLEALSCLLQEELGMSLDI--ADVVELDSSTPSKFSRHLILRIP-GHAFASNAHVGALVRQLCARARERGPDGPLAIVADSPHLNGG 296
BLAST of mRNA_P-wetherbeei_contig1932.3.3 vs. uniprot
Match: A0A6A3TPP9_9STRA (DNA-directed primase/polymerase protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TPP9_9STRA) HSP 1 Score: 130 bits (327), Expect = 2.920e-27 Identity = 71/180 (39.44%), Postives = 100/180 (55.56%), Query Frame = 3
Query: 327 GETFPRQELAFARFDELLLQASEPVHFY---------KIMAYELAGGGRRGYAVVDMRRFAPHYLTSNPVDNHWYELIREHEPCCMYFDLEFGRRLNPGLDGDALVRLWIAAVAAKLRRDLGIELGTGASSIVDLDSSTDAKFSRHVILHMPDGRLFRDNVHVGRFVHQLVAELQTAADA 839
+FPRQ AF D++ + Y ++ ++E AG G+R + V F +Y + H YE+IRE PC +YFDLEF R +NP +DGD LV ++ + +L R G+ G SI LDSST AKFSRH+I H+PDG LF DN+H G FV + +++L +DA
Sbjct: 255 SSSFPRQHEAFEFADQVAALRRRVKNTYVGRDDDRVPRVFSFENAGDGKRRFLVASFAEFWKNYTKTRADQRHVYEIIREGTPCRLYFDLEFKRAINPHVDGDTLVDRLVSLLQLQLYRRYGVHARHG--SIYQLDSSTPAKFSRHIIFHLPDGDLFVDNLHAGAFVREFISDLVAFSDA 432
BLAST of mRNA_P-wetherbeei_contig1932.3.3 vs. uniprot
Match: A0A061RJ58_9CHLO (DNA-directed primase/polymerase protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RJ58_9CHLO) HSP 1 Score: 119 bits (299), Expect = 9.210e-27 Identity = 70/170 (41.18%), Postives = 98/170 (57.65%), Query Frame = 3
Query: 330 ETFPRQELAFARFDELLL-----QASEPVHFYKIMAYELAGGGRRGYAVVDMRRFAPHYLTSNPVDNHWYELIREHEPCCMYFDLEFGRRLNPGLDGDALVRLWIAAVAAKLRRDLGI---ELGTGASSIVDLDSSTDAKFSRHVI--LHMPDGRL-FRDNVHVGRFVHQ 806
E FPRQE+AF D + ++ + F+ + E G+R + V F YL +P H YELIRE EPC +YFDLEF R+ NPG+DGD +V + +A + +G LG G S+++LDS+T KFSRH+I LH PDG + F++N+HVG FV +
Sbjct: 50 EAFPRQEMAFRWADARVAADGFGSSASALRFFGV---ENGKHGQRSFVVATEASFWRRYLAMHPKSRHHYELIREGEPCHLYFDLEFSRQANPGIDGDRMVEHLLERIAKAAEQMIGXGDGXLGIGDESVMELDSTTSEKFSRHLIVRLHGPDGPVAFKNNLHVGEFVRK 216
BLAST of mRNA_P-wetherbeei_contig1932.3.3 vs. uniprot
Match: A7RH99_NEMVE (DNA-directed primase/polymerase protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RH99_NEMVE) HSP 1 Score: 116 bits (291), Expect = 2.450e-26 Identity = 67/154 (43.51%), Postives = 89/154 (57.79%), Query Frame = 3
Query: 330 ETFPRQELAFARFDELLLQASEPVHFYKIMAYELAGGGRRGYAVVDMRRFAPHYLTSNPVDNHWYELIREHEPCCMYFDLEFGRRLNPGLDGDALVRLWIAAVAAKLRRDLGIELGTGASSIVDLDSSTDAKFSRHVILHMPDGRLFRDNVHVG 791
+ FPRQ+LAF + + SE VH + A EL G+R Y V + F Y + D H+YE+I E C +YFDLEF R N L+G +V ++I V + L+ GI+ I+DLDSSTD KFSRH+I HMP G +F+DNVH G
Sbjct: 9 KVFPRQQLAF----DFVKSCSEDVH---VFAEELGDDGKRQYIVSTLDEFWNTYRSIQAEDRHYYEVIEEGAACRLYFDLEFKREFNQDLNGPEMVEIFIEYVCSHLKESFGIDCRR--KHILDLDSSTDTKFSRHLIFHMP-GAVFKDNVHAG 152
BLAST of mRNA_P-wetherbeei_contig1932.3.3 vs. uniprot
Match: G4YLM9_PHYSP (DNA-directed primase/polymerase protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YLM9_PHYSP) HSP 1 Score: 127 bits (318), Expect = 3.580e-26 Identity = 72/179 (40.22%), Postives = 101/179 (56.42%), Query Frame = 3
Query: 327 GETFPRQELAFARFDELL-----LQASEPVHFY---------KIMAYELAGGGRRGYAVVDMRRFAPHYLTSNPVDNHWYELIREHEPCCMYFDLEFGRRLNPGLDGDALVRLWIAAVAAKLRRDLGIELGTGASSIVDLDSSTDAKFSRHVILHMPDGRLFRDNVHVGRFVHQLVAEL 821
+FPRQ AF D++ ++AS V Y ++ ++E AG G+R + V F +Y + H YE+IRE PC +YFDLE R +NP +DGD+LV ++ + +L R GI G SI LDSST AKFSRH+I H+PDG LF DN+H G FV + +++L
Sbjct: 255 SSSFPRQHEAFEFADQVAALRRRVKASRGVSGYVGPDDERVPRVFSFESAGDGKRRFLVASFAEFWKNYKKTRVDQRHVYEIIREGTPCRLYFDLELKRAINPHVDGDSLVTRLVSLLQLQLYRRYGIHTHLG--SIYQLDSSTPAKFSRHLIFHLPDGALFVDNLHAGAFVREFISDL 431
BLAST of mRNA_P-wetherbeei_contig1932.3.3 vs. uniprot
Match: W2ME65_PHYPR (DNA-directed primase/polymerase protein n=9 Tax=Phytophthora parasitica TaxID=4792 RepID=W2ME65_PHYPR) HSP 1 Score: 122 bits (306), Expect = 1.020e-24 Identity = 70/184 (38.04%), Postives = 100/184 (54.35%), Query Frame = 3
Query: 327 GETFPRQELAFARFDELLL--------QASEPVHFY------KIMAYELAGGGRRGYAVVDMRRFAPHYLTSNPVDNHWYELIREHEPCCMYFDLEFGRRLNPGLDGDALVRLWIAAVAAKLRRDLGIELGTGASSIVDLDSSTDAKFSRHVILHMPDGRLFRDNVHVGRFVHQLVAELQTAAD 836
+FPRQ+ AF D++ ++ P Y ++ ++E AG G+R + V + F +Y + H YE+IRE PC +YFDLEF R +N +DGDALV ++ + +L R G+ + I LDSST AKFSRH+I H PDG LFRDN+H G FV + + +L D
Sbjct: 253 SSSFPRQQEAFEFADQVAALRRRVKATSSASPGIGYGGDSTPRVFSFESAGDGKRRFLVASLTEFWKNYKKTRDDQRHVYEIIREGVPCRLYFDLEFKREINLHVDGDALVARLVSLLQLQLFRRYGLRVHH--RDIYQLDSSTPAKFSRHLIFHFPDGNLFRDNLHAGAFVREFINDLVDLTD 434 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1932.3.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1932.3.3 >prot_P-wetherbeei_contig1932.3.3 ID=prot_P-wetherbeei_contig1932.3.3|Name=mRNA_P-wetherbeei_contig1932.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=732bp MKARREYNYTTEEGWREEGGKQKRKRPLLLAKIKTLLRPVPPGAAYCHPAback to top mRNA from alignment at P-wetherbeei_contig1932:2220..6338- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1932.3.3 ID=mRNA_P-wetherbeei_contig1932.3.3|Name=mRNA_P-wetherbeei_contig1932.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4119bp|location=Sequence derived from alignment at P-wetherbeei_contig1932:2220..6338- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1932:2220..6338- >mRNA_P-wetherbeei_contig1932.3.3 ID=mRNA_P-wetherbeei_contig1932.3.3|Name=mRNA_P-wetherbeei_contig1932.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2196bp|location=Sequence derived from alignment at P-wetherbeei_contig1932:2220..6338- (Phaeothamnion wetherbeei SAG_119_79)back to top |