mRNA_P-wetherbeei_contig1932.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1932.2.1
Unique NamemRNA_P-wetherbeei_contig1932.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1932.2.1 vs. uniprot
Match: D8LCC9_ECTSI (DUF547 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCC9_ECTSI)

HSP 1 Score: 293 bits (749), Expect = 4.260e-96
Identity = 138/252 (54.76%), Postives = 181/252 (71.83%), Query Frame = 1
Query:   10 PDFGAWDRALRRHVAPGVIGGIGLNALDYAGMATDPDYKTFLASIENVDTQGLPKSEAYALYINAYNALAVKMVVENPCKKAWLGSRKPISSIKDIGTMVSPVWKRTAGILGGASVSLDDIEHERLRKPEGLERDPLLHACIVCASVSCPDLAASAYLPTTLEQQMADNMRAFLANPAKGMALDRGAGVLRLSKIFSWFESDFVQAGGGGGTVVDFLLPYMPSADSEYVGQNKGRLKVDFFYYDWNLNGRGP 765
            PD+ AWD  ++ HV    I GI LN +DY G+  DP+++TF+ S++N  T GL K   YAL+IN YNALA+KMV +NPCKK    +++ I+SIKDIG++V+PVWK+ AG++GG +++LDD+E+ +LR P+    DPLLHACIVCASVSCPD+A +AY P TL+  M  NMR FL NP KG++LD+  GV++LSKIF WFE DF     G  +V+D LLPYMP     YV +NKG LKVD F YDW +NG  P
Sbjct:   44 PDYAAWDSVVKAHVKTSEIRGIPLNVVDYQGVRDDPNFETFVESLKNAPTSGLGKDAEYALWINTYNALAIKMVTDNPCKKRLFRTKR-ITSIKDIGSVVAPVWKKPAGVVGGETLALDDVENVKLRDPKDYPADPLLHACIVCASVSCPDVALTAYKPETLQADMEANMRLFLTNPKKGLSLDKAKGVIKLSKIFQWFEGDFTTK-IGKDSVLDALLPYMPEDVRTYVSENKGSLKVDHFEYDWGVNGSSP 293          
BLAST of mRNA_P-wetherbeei_contig1932.2.1 vs. uniprot
Match: A0A523N030_9BACT (DUF547 domain-containing protein n=1 Tax=Nitrospina sp. TaxID=2024844 RepID=A0A523N030_9BACT)

HSP 1 Score: 201 bits (511), Expect = 1.730e-60
Identity = 108/250 (43.20%), Postives = 140/250 (56.00%), Query Frame = 1
Query:   13 DFGAWDRALRRHVAPGVIGGIGLNALDYAGMATDPDYKTFLASIENVDTQGLPK-SEAYALYINAYNALAVKMVVENPCKKAWLGSRKPISSIKDIGTMVSPVWKRTAGILGGASVSLDDIEHERLRKPEGLERDPLLHACIVCASVSCPDLAASAYLPTTLEQQMADNMRAFLANPAKGMALDRGAGVLRLSKIFSWFESDFVQAGGGGGTVVDFLLPYMPSADSEYVGQNKGRLKVDFFYYDWNLNGR 759
            DF  WD  L+RHV P  I G+ L  +DY G+  DP Y   +  ++      L    E  A +IN YN +AVKMV ++           P+ SIKD G +   VWK+TAG++GG  V+L +IEHE LRK      DP +H  IVCASVSCPDL   AY    L+QQ+ D ++ FLANP KG+ +DR  G++ LSKIF WFE DF   GG    V+ FL  Y P  D   +    G   V +  Y+W+LN R
Sbjct:   45 DFSGWDGLLKRHVGPATIAGVRLAGVDYPGVKKDPAYSKLIGELKTFSPATLNTLKEKLAFWINVYNIMAVKMVADH----------YPVDSIKDAGNLFGSVWKKTAGVVGGKEVTLHEIEHEILRKMG----DPRIHIAIVCASVSCPDLRKEAYTKERLDQQLDDQLQRFLANPGKGLKVDRARGLITLSKIFDWFEDDFETKGG----VLPFLARYAPEPDRSLL--KNGDADVSYLDYNWDLNKR 274          
BLAST of mRNA_P-wetherbeei_contig1932.2.1 vs. uniprot
Match: A0A523NRH9_9BACT (DUF547 domain-containing protein n=2 Tax=Nitrospina sp. TaxID=2024844 RepID=A0A523NRH9_9BACT)

HSP 1 Score: 197 bits (502), Expect = 3.590e-59
Identity = 104/248 (41.94%), Postives = 152/248 (61.29%), Query Frame = 1
Query:   13 DFGAWDRALRRHVAPGVIGGIGLNALDYAGMATDPDYKTFLASIENVDTQGLP-KSEAYALYINAYNALAVKMVVENPCKKAWLGSRKPISSIKDIGTMVSPVWKRTAGILGGASVSLDDIEHERLRKPEGLERDPLLHACIVCASVSCPDLAASAYLPTTLEQQMADNMRAFLANPAKGMALDRGAGVLRLSKIFSWFESDFVQAGGGGGTVVDFLLPYMPSADSEYVGQNKGRLKVDFFYYDWNLN 753
            DF  WD  L++HV P  + G+ LNALDYA + TDP++K  ++++++     L  +++  A +IN YN +AVKMV+++           P+  IKD G++   VW++ AG +GG  +SL+DIEH+ LRK +    +P +H  IVCASVSCPDL   AY   TL+ Q+ D  + FL N  KGM LD     L LSKIFSWFE DF   GG    V++F+  Y P++  + +   +G+LK+ +  Y+WNLN
Sbjct:   42 DFSGWDALLKKHVRPTTLEGVRLNALDYARVRTDPEFKKIVSALKSFPPARLKTRNQKLAFWINVYNIMAVKMVLDH----------YPVKGIKDAGSLFQSVWEQPAGQVGGKKISLNDIEHKILRKMD----EPRMHVAIVCASVSCPDLRREAYRAETLDVQLTDQTQRFLQNWGKGMRLDSEENRLYLSKIFSWFEGDFETQGG----VLEFITTYAPASIQKDL--KRGKLKISYLDYNWNLN 269          
BLAST of mRNA_P-wetherbeei_contig1932.2.1 vs. uniprot
Match: A0A3C0S8E0_9BACT (DUF547 domain-containing protein n=1 Tax=Nitrospina sp. TaxID=2024844 RepID=A0A3C0S8E0_9BACT)

HSP 1 Score: 195 bits (496), Expect = 4.590e-58
Identity = 106/249 (42.57%), Postives = 145/249 (58.23%), Query Frame = 1
Query:   13 DFGAWDRALRRHVAPGVIGGIGLNALDYAGMATDPDYKTFLASIENVDTQGLPKSE-AYALYINAYNALAVKMVVENPCKKAWLGSRKPISSIKDIGTMVSPVWKRTAGILGGASVSLDDIEHERLRKPEGLERDPLLHACIVCASVSCPDLAASAYLPTTLEQQMADNMRAFLANPAKGMALDRGAGVLRLSKIFSWFESDFVQAGGGGGTVVDFLLPYMPSADSEYVGQNKGRLKVDFFYYDWNLNG 756
            DF  WD  L+++VAPG I G+ LN ++Y  + TDP +   +  +++     L   E   A +IN YN  AVKMV +N           P+ SIKD+G++   VWKR AG++GG   +L +IEHE LRK      +P +H  IVCASVSCPDLA   Y    L +Q+   M+ FLANP KGM +D G   + LSKIF WFE+DF   GG    V+ F+ PY+ + D + VG N G L + +  Y+W +NG
Sbjct:   56 DFSDWDVLLKKYVAPGTIDGVRLNTVNYEKLKTDPAFSRLIEGLKSFSLARLKTHEDRLAFWINVYNVFAVKMVTDN----------YPLESIKDVGSLFKSVWKRNAGMVGGKEYTLYEIEHEILRKMG----EPRIHVAIVCASVSCPDLATDVYKAERLSEQLDAQMKGFLANPGKGMRVDTGGKKVFLSKIFDWFENDFESRGG----VLKFIRPYVSAKDGQAVG-NPG-LHISYMDYNWRVNG 284          
BLAST of mRNA_P-wetherbeei_contig1932.2.1 vs. uniprot
Match: A0A0J6YZB7_9BACT (DUF547 domain-containing protein n=1 Tax=Candidatus Nitromaritima sp. SCGC AAA799-A02 TaxID=1628278 RepID=A0A0J6YZB7_9BACT)

HSP 1 Score: 191 bits (486), Expect = 4.490e-57
Identity = 103/252 (40.87%), Postives = 146/252 (57.94%), Query Frame = 1
Query:   13 DFGAWDRALRRHVAPGVIGGIGLNALDYAGMATDPDYKTFLASIENVDTQGLP-KSEAYALYINAYNALAVKMVVENPCKKAWLGSRKPISSIKDIGTMVSPVWKRTAGILGGASVSLDDIEHERLRKPEGLERDPLLHACIVCASVSCPDLAASAYLPTTLEQQMADNMRAFLANPAKGMALDRGAGVLRLSKIFSWFESDFVQAGGGGGTVVDFLLPYMPSADSEYVGQNKGRLKVDFFYYDWNLNGRGP 765
            DF  WD  L+++V+P  I GI LNA+DY  + TDP +   +  ++     GL  + E  A +IN YN  AVKMVV++           P+ SI+D+G++   VWKR AGI+GG   +L +IEH  LRK      +P +HA IVCASVSCPDL   ++    LE+Q+ + M+ FL NP KGM +D G G + LS IF WFE DF   GG    V+ F+ PY+ +   + +G  K  ++V +  Y+W +N   P
Sbjct:   16 DFTEWDILLKKYVSPRTIDGIRLNAVDYGKLKTDPGFSRLVGGLKKFSPAGLKSREEKLAFWINIYNVFAVKMVVDH----------YPLKSIRDVGSLFRSVWKRPAGIIGGREYTLHEIEHGILRKMG----EPRIHAAIVCASVSCPDLLLESFSAGKLEEQLDNQMKTFLGNPGKGMQVDAGRGRVTLSSIFDWFEGDFEPRGG----VLAFIKPYVSATARKVLG--KPGVRVSYMDYNWKVNESAP 247          
BLAST of mRNA_P-wetherbeei_contig1932.2.1 vs. uniprot
Match: A0A7S1CNX3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CNX3_9STRA)

HSP 1 Score: 191 bits (486), Expect = 1.130e-56
Identity = 100/254 (39.37%), Postives = 145/254 (57.09%), Query Frame = 1
Query:   13 DFGAWDRALRRHVAPGVIGGIGLNALDYAGMATDPDYKTFLASIENVDTQGLPKSEAYALYINAYNALAVKMVVENPCKKAWLGSRKPISSIKDIGTMVSPVWKRTAGILGGASVSLDDIEHERLRKPEGLERDPLLHACIVCASVSCPDLAASAYLPTTLEQQMADNMRAFLANPAKGMALDRGAGVLRLSKIFSWFESDFVQAGGGGGTVVDFLLPYMPSADSEYVGQNKGRLKVDFFYYDWNLNGRGPPCK 774
            D+  W      ++  G +  I  + +DY G+A D  +   +AS+    T    K+E YAL++NAYN LAV  +++N C +   G   PISSI+DIG     VW R AG++ G   SL  IE + LR P+    D  LHACIVCAS+SCPD+   A+ P  ++ QM   + AF+AN  KG ALD GAG ++LS IF W+  DF+    G   V+ F+  ++P+A   ++  +   + V +F YDW++NG   PCK
Sbjct:   28 DYAGWTALTTEYIHEGELANITEHVVDYKGLAADARFDAVVASLATAATP-TTKNETYALFMNAYNVLAVNTIIKNACVRPVGGGCHPISSIRDIGNASVSVWNRPAGVVAGRQFSLQQIE-DFLRDPKPYGEDARLHACIVCASISCPDVRIGAFTPADVDAQMDAAVAAFVANTGKGAALDEGAGAIQLSPIFLWYALDFIVHEDG---VLPFVAAHLPAAQGAWLRAHASAVSVSYFDYDWDVNGP-VPCK 275          
BLAST of mRNA_P-wetherbeei_contig1932.2.1 vs. uniprot
Match: A0A8J5X6Q3_DIALT (DUF547 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X6Q3_DIALT)

HSP 1 Score: 191 bits (484), Expect = 4.610e-56
Identity = 110/250 (44.00%), Postives = 145/250 (58.00%), Query Frame = 1
Query:   13 DFGAWDRALRRHVAPGVIGGI--GLNALDYAGMATDPDYKTFLASIENVDTQGLPKSEAYALYINAYNALAVKMVVENPCKKAWLGSRKPISSIKDIGTMVSPVWKRTAGILGGASVSLDDIEHERLRKPEGLERDPLLHACIVCASVSCPDLAASAYLPTTLEQQMADNMRAFLANPAKGMALDRGAGVLRLSKIFSWFESDFVQAGGGGGTVVDFLLPYMPSADSEYVGQNKGRLKVDFFYYDWNLNG 756
            D  AWDR L+ HV PG   G   G++ +DYAG+A DPD+  +LA +   D   L   E  ALYINAYNAL    VV +   +       P+ SI ++ +    VW R AG +GG  +SL+ +EH++LR+      +P +HACIVCAS SCPDL A A++   LE+QM+  + A+LA+PAKG A+  G G +RLS+I  WFE D+    GG   V  FLL   P AD      +  R  V FF YDW LNG
Sbjct:   64 DHAAWDRCLKAHVRPGGTAGAIAGVHLVDYAGLAADPDFDAYLAQLAAADVPALGARERLALYINAYNALCCAHVVRHV--RDATADAPPLRSILELKSPGEVVWDRYAGTVGGERLSLNQVEHDKLRRAWA---EPAVHACIVCASASCPDLRAEAFVAPRLEEQMSAQLAAWLAHPAKG-AIAEGPGRVRLSRILLWFEDDW----GGAAGVRAFLLG-QPLADGVAAALSAPRPAVRFFEYDWRLNG 302          
BLAST of mRNA_P-wetherbeei_contig1932.2.1 vs. uniprot
Match: A0A350UX17_9BACT (DUF547 domain-containing protein n=2 Tax=Nitrospinae TaxID=1293497 RepID=A0A350UX17_9BACT)

HSP 1 Score: 187 bits (474), Expect = 2.130e-55
Identity = 103/250 (41.20%), Postives = 141/250 (56.40%), Query Frame = 1
Query:   10 PDFGAWDRALRRHVAPGVIGGIGLNALDYAGMATDPDYKTFLASIENVDTQGLPK-SEAYALYINAYNALAVKMVVENPCKKAWLGSRKPISSIKDIGTMVSPVWKRTAGILGGASVSLDDIEHERLRKPEGLERDPLLHACIVCASVSCPDLAASAYLPTTLEQQMADNMRAFLANPAKGMALDRGAGVLRLSKIFSWFESDFVQAGGGGGTVVDFLLPYMPSADSEYVGQNKGRLKVDFFYYDWNLNG 756
            PDF  WD  L+++VAP  I G+ LNA++Y  + TDP +   +  +++     L K  E  A +IN YN  AVKMV +N           P+ SIKD+G++   VWKR AGI+GG   +L+ IEH+ LRK      +P +H  IVCASVSCPDLA   Y    L +Q+   MR FLANP KGM +      + LSKIF WFE DF   GG    V+ F+  Y+   D + +  +   L+V +  Y+W +NG
Sbjct:    5 PDFADWDALLKKYVAPETIDGVRLNAVNYGKLKTDPAFSRLVNGLKSFSPAQLKKHEEKLAFWINVYNVFAVKMVTDN----------YPLESIKDVGSLFKSVWKRNAGIVGGKDYTLNAIEHKILRKMN----EPRIHVAIVCASVSCPDLATDVYKADRLSEQLDVQMRKFLANPGKGMRVGTEGKKVFLSKIFDWFEDDFEPRGG----VLKFIRLYVSPKDRQALDNSS--LRVSYMDYNWGVNG 234          
BLAST of mRNA_P-wetherbeei_contig1932.2.1 vs. uniprot
Match: A0A2H0MVD3_9BACT (DUF547 domain-containing protein n=1 Tax=Nitrospinae bacterium CG11_big_fil_rev_8_21_14_0_20_45_15 TaxID=1974048 RepID=A0A2H0MVD3_9BACT)

HSP 1 Score: 185 bits (470), Expect = 2.140e-54
Identity = 103/250 (41.20%), Postives = 145/250 (58.00%), Query Frame = 1
Query:   13 DFGAWDRALRRHVAPGVIGGIGLNALDYAGMATDPDYKTFLASIENVDTQGLPK-SEAYALYINAYNALAVKMVVENPCKKAWLGSRKPISSIKDIGTMVSPVWKRTAGILGGASVSLDDIEHERLRKPEGLERDPLLHACIVCASVSCPDLAASAYLPTTLEQQMADNMRAFLANPAKGMALDRGAGVLRLSKIFSWFESDFVQAGGGGGTVVDFLLPYMPSADSEYVGQNKGRLKVDFFYYDWNLNGR 759
            DF  WD  L+ +V+  +I  I LN LDY  +  +   K  L  +EN D   L K  E  A +IN YN LAVKMV+++           P+ SIKDIG++   VWKR AG + G   +L+DIEHE LRK      +P +HA IVCASVSCPDL+ + ++P TL+ Q+   M+ F+ N AKG+ +DR    ++LS IF WF  DF   GG    V+ F+  Y+   D++++  N+   ++ +F YDW LN R
Sbjct:   39 DFSEWDSILKENVSTKIIREIPLNVLDYKKLKYNSQLKNLLQRLENTDISNLKKREEVLAFWINVYNILAVKMVLDH----------YPVKSIKDIGSIFRSVWKRPAGKVAGEERTLNDIEHEILRKMG----EPRIHAAIVCASVSCPDLSKTVFVPETLDAQLDWQMKVFVHNSAKGLVIDREGKRVQLSAIFKWFAEDFKSKGG----VLSFVGAYLSPEDNKFI--NRPDTEISYFDYDWGLNER 268          
BLAST of mRNA_P-wetherbeei_contig1932.2.1 vs. uniprot
Match: A0A3M1DNF8_9GAMM (DUF547 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M1DNF8_9GAMM)

HSP 1 Score: 183 bits (465), Expect = 6.520e-54
Identity = 106/251 (42.23%), Postives = 152/251 (60.56%), Query Frame = 1
Query:    7 KPDFGAWDRALRRHVAPGVIGGIGLNALDYAGMATDPDYKTFLASIENVDTQGLP-KSEAYALYINAYNALAVKMVVENPCKKAWLGSRKPISSIKDIGTMVSPVWKRTAGILGGASVSLDDIEHERLRKPEGLERDPLLHACIVCASVSCPDLAASAYLPTTLEQQMADNMRAFLANPAKGMALDRGAGVLRLSKIFSWFESDFVQAGGGGGTVVDFLLPYMPSADSEYVGQNKGRLKVDFFYYDWNLNG 756
            +PD+ A+ R L+ HV PG + G+ LN +DY+ +  DPD+   +A++E  D + L  + E  A +INAYN LA+K+V+++     W     P++SIK++G  + PVWKR AG +GG +V+LD IE+E LR P G   +P +H  IVCAS+ CPDL    Y    L+ Q+ D  RA+LANP KG+ L+  AGV  +SKIF WF+ DF + GG    V  FL  Y P     +      R++ D   Y+W+LNG
Sbjct:   22 EPDWSAYVRLLQAHVHPGTLQGVHLNRVDYSALRRDPDFTAAIATLEGFDPKQLSGRKERLAFWINAYNLLAMKVVLDH-----W-----PVASIKEVGNFLFPVWKRDAGKVGGKAVTLDGIENEVLR-PLG---EPRVHMAIVCASIGCPDLRREPYTAAALDGQLDDQARAYLANPDKGLRLE--AGVAHVSKIFDWFDQDFDKVGG----VPAFLARYAP-----HWPDPAPRIEADI-PYNWSLNG 246          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1932.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCC9_ECTSI4.260e-9654.76DUF547 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A523N030_9BACT1.730e-6043.20DUF547 domain-containing protein n=1 Tax=Nitrospin... [more]
A0A523NRH9_9BACT3.590e-5941.94DUF547 domain-containing protein n=2 Tax=Nitrospin... [more]
A0A3C0S8E0_9BACT4.590e-5842.57DUF547 domain-containing protein n=1 Tax=Nitrospin... [more]
A0A0J6YZB7_9BACT4.490e-5740.87DUF547 domain-containing protein n=1 Tax=Candidatu... [more]
A0A7S1CNX3_9STRA1.130e-5639.37Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A8J5X6Q3_DIALT4.610e-5644.00DUF547 domain-containing protein n=1 Tax=Diacronem... [more]
A0A350UX17_9BACT2.130e-5541.20DUF547 domain-containing protein n=2 Tax=Nitrospin... [more]
A0A2H0MVD3_9BACT2.140e-5441.20DUF547 domain-containing protein n=1 Tax=Nitrospin... [more]
A0A3M1DNF8_9GAMM6.520e-5442.23DUF547 domain-containing protein n=1 Tax=Gammaprot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1932contigP-wetherbeei_contig1932:1694..3359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LCC9
Preferred nameZRT3
PFAMsZip
Model size777
Max annot lvl2759|Eukaryota
KEGG koko:K07238
KEGG TC2.A.5.5
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0006873,GO:0006875,GO:0006882,GO:0007034,GO:0008150,GO:0008324,GO:0009987,GO:0012505,GO:0015075,GO:0015318,GO:0016020,GO:0016021,GO:0019725,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0031090,GO:0031224,GO:0031984,GO:0034220,GO:0034486,GO:0042175,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0046915,GO:0046916,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0055065,GO:0055069,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070838,GO:0070839,GO:0071577,GO:0072503,GO:0072507,GO:0072509,GO:0072511,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098805,GO:0098827,GO:0098852,GO:0140147
Exons5
Evalue6.98e-97
EggNOG OGsCOG0428@1|root,KOG2474@2759|Eukaryota
Ec32 ortholog descriptionDomain of unknown function DUF547
Ec32 orthologEc-14_005220.1
Descriptionzinc ion transmembrane transporter activity
Cds size777
COG categoryP
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186169.5037155-CDS-P-wetherbeei_contig1932:1693..17931683186169.5037155-CDS-P-wetherbeei_contig1932:1693..1793Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1932 1694..1793 +
1683186169.5165644-CDS-P-wetherbeei_contig1932:1926..21181683186169.5165644-CDS-P-wetherbeei_contig1932:1926..2118Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1932 1927..2118 +
1683186169.5269647-CDS-P-wetherbeei_contig1932:2199..23061683186169.5269647-CDS-P-wetherbeei_contig1932:2199..2306Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1932 2200..2306 +
1683186169.536557-CDS-P-wetherbeei_contig1932:2674..28661683186169.536557-CDS-P-wetherbeei_contig1932:2674..2866Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1932 2675..2866 +
1683186169.545367-CDS-P-wetherbeei_contig1932:3173..33591683186169.545367-CDS-P-wetherbeei_contig1932:3173..3359Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1932 3174..3359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1932.2.1prot_P-wetherbeei_contig1932.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1932 1694..3359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1932.2.1

>prot_P-wetherbeei_contig1932.2.1 ID=prot_P-wetherbeei_contig1932.2.1|Name=mRNA_P-wetherbeei_contig1932.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=259bp
MAKPDFGAWDRALRRHVAPGVIGGIGLNALDYAGMATDPDYKTFLASIEN
VDTQGLPKSEAYALYINAYNALAVKMVVENPCKKAWLGSRKPISSIKDIG
TMVSPVWKRTAGILGGASVSLDDIEHERLRKPEGLERDPLLHACIVCASV
SCPDLAASAYLPTTLEQQMADNMRAFLANPAKGMALDRGAGVLRLSKIFS
WFESDFVQAGGGGGTVVDFLLPYMPSADSEYVGQNKGRLKVDFFYYDWNL
NGRGPPCK*
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mRNA from alignment at P-wetherbeei_contig1932:1694..3359+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1932.2.1 ID=mRNA_P-wetherbeei_contig1932.2.1|Name=mRNA_P-wetherbeei_contig1932.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1666bp|location=Sequence derived from alignment at P-wetherbeei_contig1932:1694..3359+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAAAGCCCGACTTCGGGGCGTGGGATAGGGCGCTGAGGAGGCACGT GGCTCCCGGCGTGATTGGGGGAATCGGATTGAACGCGCTGGATTATGCAG GTATGGGCTCTTTTCCGTTTTAGGCAATCTGCAGAAGGTCGTATATCCAA TACTTTGTGGCTGTCTTTTTAGTTGTGGAAATGGTGCATGATTATCTGTC CCTCGTGCAAGATTCCTCTCCTCGCACCCTCAGGAATGGCAACCGACCCT GATTATAAGACTTTTTTGGCCTCCATCGAGAACGTCGATACGCAAGGGCT GCCGAAGAGCGAGGCCTACGCTCTTTATATCAACGCCTACAACGCCCTTG CCGTCAAGATGGTCGTCGAAAACCCATGCAAGAAGGCATGGCTGGGAAGC AGAAAGCCCATCTCCAGCATCAAAGGTGCGATGCCTCTTCTGGTGCTTCC CGCTTTCTGTGTTACCTATTTTCCATTCCGTCTCCGCCTCGGCACTTTTT TATCAGACATCGGCACGATGGTCAGCCCAGTATGGAAGCGGACGGCGGGC ATCCTTGGCGGCGCATCGGTTTCGCTCGACGACATCGAGCACGAAAGACT TCGCAAGCCAGAGGTGCGCTGAAGAAGCTTGCCTTTCGGTCTTTTGTTTC CCTTTTTCGTATGTTTTTGTCAATTCTCGGAGACGCTTGCACATGATCTA TGACGACAGCTAGACAGCCGAACTGTTACCAACTACTCCTGTGGACTATT CTTGCCATACCACACACCCATTGACCAAGATCAGTCAGTGCAGCCTCCCC GGCGATCCTCCAACCTGTAGCCTGGCCAATCATACGCTTCTATGTTGATT TCAGCCGTAGAAATTATGTTCTTGCCGCCATAAGTCTTATCTTTTTACCA TACCTGCGGTGTTGCCGGTGCGGCTGCTGCCGCCGCCGTCACCGCCGCGG CGAACGGCTATTCGCCGGCATTCCTTTGCAGGGCCTCGAACGGGACCCGC TCCTGCACGCCTGCATCGTCTGCGCCAGCGTCAGCTGCCCTGACCTCGCG GCGAGCGCCTACCTGCCGACGACGCTCGAGCAGCAGATGGCCGACAACAT GCGGGCGTTCCTGGCCAACCCAGCCAAGGGCATGGCGCTCGACCGCGGGG CTGGCGTCCTGAGGCTGTCCAAGGTGTGCCGCTCATCCTTCCGCTCGGGC TGTCTGTCGGTTCAGGCGCTGTTTATCCTTGGTTTTGGTTGCTGGCGGGG GGGGCAGCCTGCTCTTCCGTGGCCAGCACCGCAGTGTAGTGTACACGTTA TTGCCAGCACCACAGTGCAGTGTAAAGGTTAATATCGGTTTTGCGAGCCT GCAATTGTGGAGCGGCCTCTTTCCTTTGTTCTCCTCAAGAGCGCTTTGCC TTGCAATGCCACATATTTGCACCCGGCAGCTCTTAAATCCTTTGTCTCTG CCACCCATCTTGCCGCTTGGCTGCTGGCAGATTTTCAGCTGGTTCGAGTC GGATTTCGTGCAGGCTGGAGGCGGCGGCGGGACGGTGGTTGACTTCCTGC TGCCATACATGCCGAGCGCGGACAGCGAGTACGTGGGGCAAAACAAGGGG CGACTGAAGGTTGACTTTTTTTACTACGACTGGAATCTGAACGGCAGGGG CCCGCCGTGCAAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1932:1694..3359+

>mRNA_P-wetherbeei_contig1932.2.1 ID=mRNA_P-wetherbeei_contig1932.2.1|Name=mRNA_P-wetherbeei_contig1932.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=777bp|location=Sequence derived from alignment at P-wetherbeei_contig1932:1694..3359+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAAAGCCCGACTTCGGGGCGTGGGATAGGGCGCTGAGGAGGCACGT
GGCTCCCGGCGTGATTGGGGGAATCGGATTGAACGCGCTGGATTATGCAG
GAATGGCAACCGACCCTGATTATAAGACTTTTTTGGCCTCCATCGAGAAC
GTCGATACGCAAGGGCTGCCGAAGAGCGAGGCCTACGCTCTTTATATCAA
CGCCTACAACGCCCTTGCCGTCAAGATGGTCGTCGAAAACCCATGCAAGA
AGGCATGGCTGGGAAGCAGAAAGCCCATCTCCAGCATCAAAGACATCGGC
ACGATGGTCAGCCCAGTATGGAAGCGGACGGCGGGCATCCTTGGCGGCGC
ATCGGTTTCGCTCGACGACATCGAGCACGAAAGACTTCGCAAGCCAGAGG
GCCTCGAACGGGACCCGCTCCTGCACGCCTGCATCGTCTGCGCCAGCGTC
AGCTGCCCTGACCTCGCGGCGAGCGCCTACCTGCCGACGACGCTCGAGCA
GCAGATGGCCGACAACATGCGGGCGTTCCTGGCCAACCCAGCCAAGGGCA
TGGCGCTCGACCGCGGGGCTGGCGTCCTGAGGCTGTCCAAGATTTTCAGC
TGGTTCGAGTCGGATTTCGTGCAGGCTGGAGGCGGCGGCGGGACGGTGGT
TGACTTCCTGCTGCCATACATGCCGAGCGCGGACAGCGAGTACGTGGGGC
AAAACAAGGGGCGACTGAAGGTTGACTTTTTTTACTACGACTGGAATCTG
AACGGCAGGGGCCCGCCGTGCAAGTAG
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