mRNA_P-wetherbeei_contig1928.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1928.6.1
Unique NamemRNA_P-wetherbeei_contig1928.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1928.6.1 vs. uniprot
Match: A0A7S4E9T8_9STRA (Hypothetical protein n=11 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E9T8_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.180e-17
Identity = 67/177 (37.85%), Postives = 87/177 (49.15%), Query Frame = 1
Query:   64 VLHCIVGGVRSEPALVESDRMLSCVTPRAPIAISDGGGVVTVSVTGNGGADASAAPGTFSYVQSPTLTGLFPGHVDERGGIVVSVYGSGFIPGPNLSCRFGGLEIVSAEWISPGEVACVTPPAVNGPGAVSVEISDDGTSFLSAAGLSVTYLRAFTVASAKPVSGPACGGTTVVISG 594
            V  C+ G   S PA V SD  + C  P        G G + V  + NG  DA A+   F YV  P +  L P      GG  V V G  F     L+CRFG     +A W++  E+ C  PPA +  G V+VE+S +G  F +A G + +Y    TV  A P+SGPA GGT VV+ G
Sbjct: 1371 VSACLFGDA-STPATVVSDTEVRCAAPA-------GAGSLAVGASVNG-VDAYASAARFRYVARPEVLSLEPASAGVEGGATVVVRGLRFPDSSLLACRFGATT-AAARWVNATELECEAPPA-DASGPVTVEVSANGADF-TADGAAFSYAATATVTGAGPLSGPATGGTEVVVRG 1535          
BLAST of mRNA_P-wetherbeei_contig1928.6.1 vs. uniprot
Match: A0A7S1CPW8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CPW8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.750e-13
Identity = 53/145 (36.55%), Postives = 73/145 (50.34%), Query Frame = 1
Query:  157 AISDGGGVVTVSVTGNGGADASAAPGTFSYVQSPTLTGLFPGHVDERGGIVVSVYGSGFIPGPNLSCRFGGLEIVSAEWISPGEVACVTPPAVNGPGAVSVEISDDGTSFLSAAGLSVTYLRAFTVASAKPVSGPACGGTTVVIS 591
            AI    G   + ++ N   + SA    FSYV +P +T + P      GG VV++ GSGF   P L CRFG +  V+A ++S  E+ C+ P    G   V+V  +    S  SAA      +R   V    P SGPA GGTT+V+S
Sbjct:    2 AIDAEAGPADIRISNNDCHELSADSAQFSYVAAPIVTSVSPRVGPVGGGTVVTILGSGFFESPQLECRFG-MTSVAATFVSATELRCLVPDLAAGVLDVTVSTNGVDASAASAAATFEAVVRP-RVLGISPTSGPAAGGTTIVVS 144          
BLAST of mRNA_P-wetherbeei_contig1928.6.1 vs. uniprot
Match: UPI001E6474F2 (IPT/TIG domain-containing protein n=1 Tax=Kineosporia rhizophila TaxID=84633 RepID=UPI001E6474F2)

HSP 1 Score: 73.6 bits (179), Expect = 1.090e-11
Identity = 60/185 (32.43%), Postives = 87/185 (47.03%), Query Frame = 1
Query:   40 SNQDTSSRVLHCIVGGVRSEPALVESDRMLSCVTPRAPIAISDGGGVVTVSVTGNGGADASAAPGTFSYVQSPTLTGLFPGHVDERGGIVVSVYGSGFIPGPNLSCRFGGLEIVSAEWISPGEVACVTPPAVNGPGAVSVEISDDGTSFLSAAGLSVTYLRAFTVASAKPVSGPACGGTTVVISG 594
            S  DT S       GGV +   L  SD +++ VTP      + G G V V+VT   G   S+APGTF+Y+ +P ++G+ P      GG  V++ G+GF P   ++    GL   ++  ++       T P    PG V+V +S  G    S A    TY+    V+   P  G   GG TV I+G
Sbjct: 1292 SGFDTVSGAAAVRFGGVNAVSYLKVSDSVITAVTP------AHGAGTVDVTVTTADGG--SSAPGTFTYLGAPAVSGINPSTGPLAGGNTVTITGAGFTPASTVNF---GLAAATSVVVNSSSSITATAPQSLVPGTVNVRVSTAGGISSSTAADDYTYVGTPVVSGLSPTVGGEAGGETVSITG 1465          
BLAST of mRNA_P-wetherbeei_contig1928.6.1 vs. uniprot
Match: UPI001E5CAF8B (IPT/TIG domain-containing protein n=1 Tax=Kineosporia babensis TaxID=499548 RepID=UPI001E5CAF8B)

HSP 1 Score: 72.0 bits (175), Expect = 3.810e-11
Identity = 56/136 (41.18%), Postives = 71/136 (52.21%), Query Frame = 1
Query:  193 VTGNGGADASAAPGTFSYVQSPTLTGLFPGHVDERGGIVVSVYGSGFIPGPNLSCRFGGLEIVSAEWISPGEVACVTPPAVNGPGAVSVEISDDGTSFLSAAGLSVTYLRAFTVASAKPVSGPACGGTTVVISGGG 600
            VT  GG  A++A   F YV +PT+TGL P      GG  V++ G+ F     +S  FGG    +    SP E+   +P    G  AV V  +D GT   SAAG + TY+    V    P +GPA GGTTVVISG G
Sbjct: 2456 VTTVGGNSATSAADRFRYVGAPTVTGLSPSSGPVAGGTSVTITGTQFYGVTGVS--FGG-SAATFTVASPTEITATSPSHAAGAVAVLVTTTDGGT---SAAGQNFTYVADPVVTGLNPTTGPAPGGTTVVISGSG 2585          
BLAST of mRNA_P-wetherbeei_contig1928.6.1 vs. uniprot
Match: A0A7S0Z255_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z255_9CRYP)

HSP 1 Score: 70.1 bits (170), Expect = 1.420e-10
Identity = 68/196 (34.69%), Postives = 92/196 (46.94%), Query Frame = 1
Query:   28 GKGVSNQDTSSRVLHCIVGGVRSEPALVESDRMLSCVTPRAPIAISDGGGVVTVSVTGNGGADASAAPGTFSYVQSPTLTGLFPGHVDERG-----GIVVSVYGSGFIPGPNLSCRFGGLEIVSAEWISPGEVACVTPPAVNGPGAVSVEISDDGTSFLSAAGLSVTYLRAFTVASAKPVSGPACGGTTVVISGGG 600
            G G S      R    +  G R   A V +  +++C++P A      G G V V V+ NGG+D +     F Y  S  +  + P     RG     G +V+V GS F  G +LSCRFG    VSA + S   V C  P    G GAV V++S++G  + SA G    Y     V S  P  GP  GGT +++S GG
Sbjct:  134 GTGFSGSAPQCRFGSTVSSGDR---ARVVTSSVVACLSPAA-----GGAGGVAVEVSMNGGSDFTQNRVQFVYGASARVISVMP----SRGTSGVEGQIVTVIGSDFAHGSDLSCRFGVNGSVSALYESSSLVMCSAPS--RGAGAVRVDVSNNGVDW-SATGGRYEYEVTDGVWSVSPSRGPVSGGTPILVSVGG 314          
BLAST of mRNA_P-wetherbeei_contig1928.6.1 vs. uniprot
Match: UPI00194FEB8E (IPT/TIG domain-containing protein n=1 Tax=Archangium violaceum TaxID=83451 RepID=UPI00194FEB8E)

HSP 1 Score: 67.8 bits (164), Expect = 1.040e-9
Identity = 62/177 (35.03%), Postives = 82/177 (46.33%), Query Frame = 1
Query:   82 GGVRSEPALVESDRMLSCVTP-RAPIAISDGGGVVTVSVTGNGGADASAAPG-TFSYVQSPTLTGLFPGHVDERGGIVVSVYGSGFIPGPNLSCRFGGLEIVSAEWISPGEVACVTPPAVNGPGAVSVEISDDGTSFLSAAGLSVTYLRAF--TVASAKPVSGPACGGTTVVISGGG 600
            GG  +    V SD  LS + P  AP       G V V V    G + S   G T+    +PTL GL PG     GG +V++ GSGF+PG  ++  FGG+     E  SP  +   TP    G   V+V   D   + LS A    TY  A    ++S  P +GP+ GGT V + G G
Sbjct: 1824 GGEVASGVTVTSDTSLSAILPPHAP-------GNVDVVVRNTDGQEGSLLGGFTYEAAPAPTLVGLSPGSGSGNGGTMVTLSGSGFVPGARVT--FGGVAAPVVEVASPSSLTATTPAHAAGRVDVTVTNPDGQGATLSGA---FTYEAAPLPVLSSISPAAGPSRGGTAVTLRGSG 1988          
BLAST of mRNA_P-wetherbeei_contig1928.6.1 vs. uniprot
Match: A0A8I1U285_9GAMM (IPT/TIG domain-containing protein n=1 Tax=Legionella sp. TaxID=459 RepID=A0A8I1U285_9GAMM)

HSP 1 Score: 67.0 bits (162), Expect = 1.990e-9
Identity = 59/177 (33.33%), Postives = 89/177 (50.28%), Query Frame = 1
Query:   67 LHCIVGGVRSEPALVESDRMLSCVTPRAPIAISDGGGVVTVSVTGNGGADASAAPGTFSYVQ-SPTLTGLFPGHVDERGGIVVSVYGSGFIPGPNLSCRFGGLEIVSAEWISPGEVACVTPPAVNGPGAVSVEISDDGTSFLSAAGLSVTYLRAFTVASAKPVSGPACGGTTVVISG 594
            ++  VGG+ +    V     L+  TP    A   G  +  V VT + G+  ++A G ++Y   +PTL+ L P      GG VV++ G+GF+PG  +S  FGG+        S   +  VTP  ++G  AV+V +++ G S  + AG       A T+ S  P +GP  GGT V ISG
Sbjct: 5277 MNVTVGGIPATNVTVVDATTLTFNTP----AYLSGALIKDVVVTNSAGS--ASAVGGYTYTAIAPTLSSLSPNTGSLAGGTVVTLTGTGFVPGTLVS--FGGIPATGVTINSATSLTAVTPSYLSGALAVNVVVNN-GVSNATLAGGFTYQAAAPTITSISPAAGPMSGGTLVTISG 5444          
BLAST of mRNA_P-wetherbeei_contig1928.6.1 vs. uniprot
Match: A0A0C2HJ42_9DELT (OmpA-like domain-containing protein n=2 Tax=Geoalkalibacter ferrihydriticus TaxID=392333 RepID=A0A0C2HJ42_9DELT)

HSP 1 Score: 66.2 bits (160), Expect = 3.300e-9
Identity = 54/175 (30.86%), Postives = 84/175 (48.00%), Query Frame = 1
Query:   82 GGVRSEPALVESDRMLSCVTP-RAPIAISDGGGVVTVSVTGNGGADASAAPGTFSYVQSPTL-TGLFPGHVDERGGIVVSVYGSGFIPGPNLSCRFGGLEIVSAEWISPGEVACVTPPAVNGPGAVSVEISDDGTSFLSAAGLSVTYLRAFTVASAKPVSGPACGGTTVVISGGG 600
            GG  + P  V +   L+   P +AP       G V V VT   G+    A   F+Y+  P L   + PG V  +GG ++S+ G+GF+PG  +S     L + + +  SPG++    P    GPG  +V + +   +F    G ++ ++    + S  P SGPA GGT V + G G
Sbjct:  898 GGATATPVTVSASNSLTVAPPPQAPA------GTVDVVVTTPAGSATLHAG--FTYIDEPLLLNNVIPGRVSTQGGDLISLTGTGFLPGAIVSIDGNALPVTAVQITSPGDIIAELP--ARGPGLATVTVQNPDATFSIWPG-TLEFITPPQIFSIFPPSGPATGGTLVDVFGSG 1061          
BLAST of mRNA_P-wetherbeei_contig1928.6.1 vs. uniprot
Match: UPI0003FC78FA (IPT/TIG domain-containing protein n=1 Tax=Nocardioides halotolerans TaxID=433660 RepID=UPI0003FC78FA)

HSP 1 Score: 64.7 bits (156), Expect = 1.120e-8
Identity = 56/173 (32.37%), Postives = 79/173 (45.66%), Query Frame = 1
Query:   82 GGVRSEPALVESDRMLSCVTPRAPIAISDGGGVVTVSVTGNGGADASAAPGTFSYVQSPTLTGLFPGHVDERGGIVVSVYGSGFIPGPNLSCRFGGLEIVSAEWISPGEVACVTPPAVNGPGAVSVEISDDGTSFLSAAGLSVTYLRAFTVASAKPVSGPACGGTTVVISGGG 600
            GGV +   +V S    + VTP      +   G V VSV+  GG      P  ++YV +P LT + P      GG  V++ G+GF  G  +S  FGG         S       TP    GP  V V ++  G S  S    + TY+ +  +AS  P +GP  GGT+V ++G G
Sbjct:  517 GGVPATGVVVTSSTQATVVTP------AHAAGTVDVSVSTPGGP--VTLPNAYTYVAAPVLTAVSPDAGPTGGGTTVTLTGTGFRTGTQVS--FGGTPATGVVVTSATSAIATTPARPAGP--VDVTVTTPGGS--SGVPAAFTYVVSPILASVTPATGPTAGGTSVTLTGSG 675          
BLAST of mRNA_P-wetherbeei_contig1928.6.1 vs. uniprot
Match: A0A1V9Z1P3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1P3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.080e-8
Identity = 52/176 (29.55%), Postives = 89/176 (50.57%), Query Frame = 1
Query:   67 LHCIVGGVRSEPALVESDRMLSCVTPRAPIAISDGGGVVTVSVTGNGGADASAAPGTFSYVQSPTLTGLFPGHVDERGGIVVSVYGSGFIPGPNLSCRFGGLEIVSAEWISPGEVACVTPPAVNGPGAVSVEISDDGTSFLSAAGLSVTYLRAFTVASAKPVSGPACGGTTVVISG 594
            L C+ G      A + +  ++SC   R+P  ++    ++ VS++ NGGADAS+  GTF+    P++  + P          V+V+GSGF       C   G+ +V+ ++++ G + C+ PP      AV++ + D   + L+ +  + T+     V SA P  GPA GG  V +SG
Sbjct:  837 LTCVFGDALVVSADLVAPSVVSC---RSPKLLASNKSMIAVSLSPNGGADASSI-GTFTIASPPSVDWITPSWGRRDVATSVTVFGSGF--SSESLCFVNGVALVT-QYLTEGSLICLVPPTATSQ-AVAIAVGDSSHA-LTTSSNTFTFYDDARVRSALPTVGPATGGFMVRLSG 1003          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1928.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4E9T8_9STRA2.180e-1737.85Hypothetical protein n=11 Tax=Pelagomonas calceola... [more]
A0A7S1CPW8_9STRA1.750e-1336.55Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
UPI001E6474F21.090e-1132.43IPT/TIG domain-containing protein n=1 Tax=Kineospo... [more]
UPI001E5CAF8B3.810e-1141.18IPT/TIG domain-containing protein n=1 Tax=Kineospo... [more]
A0A7S0Z255_9CRYP1.420e-1034.69Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
UPI00194FEB8E1.040e-935.03IPT/TIG domain-containing protein n=1 Tax=Archangi... [more]
A0A8I1U285_9GAMM1.990e-933.33IPT/TIG domain-containing protein n=1 Tax=Legionel... [more]
A0A0C2HJ42_9DELT3.300e-930.86OmpA-like domain-containing protein n=2 Tax=Geoalk... [more]
UPI0003FC78FA1.120e-832.37IPT/TIG domain-containing protein n=1 Tax=Nocardio... [more]
A0A1V9Z1P3_9STRA3.080e-829.55Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1928contigP-wetherbeei_contig1928:3860..4459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FLK0
PFAMsLaminin_G_3,RasGAP,TIG
Model size600
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.17e-27
EggNOG OGsKOG3610@1|root,KOG3610@2759|Eukaryota
Descriptionsemaphorin-plexin signaling pathway
Cds size600
COG categoryBQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186168.835656-CDS-P-wetherbeei_contig1928:3859..44591683186168.835656-CDS-P-wetherbeei_contig1928:3859..4459Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1928 3860..4459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1928.6.1prot_P-wetherbeei_contig1928.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1928 3860..4459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1928.6.1

>prot_P-wetherbeei_contig1928.6.1 ID=prot_P-wetherbeei_contig1928.6.1|Name=mRNA_P-wetherbeei_contig1928.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=200bp
GGGGGIERGGKGVSNQDTSSRVLHCIVGGVRSEPALVESDRMLSCVTPRA
PIAISDGGGVVTVSVTGNGGADASAAPGTFSYVQSPTLTGLFPGHVDERG
GIVVSVYGSGFIPGPNLSCRFGGLEIVSAEWISPGEVACVTPPAVNGPGA
VSVEISDDGTSFLSAAGLSVTYLRAFTVASAKPVSGPACGGTTVVISGGG
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mRNA from alignment at P-wetherbeei_contig1928:3860..4459+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1928.6.1 ID=mRNA_P-wetherbeei_contig1928.6.1|Name=mRNA_P-wetherbeei_contig1928.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=600bp|location=Sequence derived from alignment at P-wetherbeei_contig1928:3860..4459+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGTGGCGGTGGCATCGAACGTGGCGGGAAAGGTGTAAGTAATCAAGA CACTAGCAGCAGGGTGCTCCACTGCATTGTGGGCGGCGTGCGTTCCGAGC CCGCACTGGTGGAATCCGACAGAATGCTTTCGTGTGTGACGCCCAGAGCA CCGATTGCTATCAGTGACGGTGGCGGCGTCGTCACTGTGTCCGTTACCGG TAATGGAGGCGCTGATGCCAGCGCCGCGCCCGGCACCTTCAGCTACGTCC AGTCGCCGACGTTAACCGGCCTCTTCCCCGGGCATGTCGATGAGCGCGGG GGCATCGTCGTGTCTGTATATGGATCCGGTTTTATTCCCGGTCCCAATCT CTCTTGCCGATTTGGCGGCTTGGAAATTGTCTCGGCCGAGTGGATTTCGC CGGGCGAAGTGGCATGCGTAACGCCGCCAGCGGTAAATGGTCCGGGCGCC GTAAGCGTTGAGATTTCCGACGATGGCACCAGCTTCCTTTCCGCGGCGGG GCTATCTGTGACGTACCTGCGCGCATTCACCGTGGCGTCAGCTAAGCCGG TGTCCGGCCCAGCATGCGGCGGCACCACCGTCGTTATTTCTGGCGGGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1928:3860..4459+

>mRNA_P-wetherbeei_contig1928.6.1 ID=mRNA_P-wetherbeei_contig1928.6.1|Name=mRNA_P-wetherbeei_contig1928.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=600bp|location=Sequence derived from alignment at P-wetherbeei_contig1928:3860..4459+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGTGGCGGTGGCATCGAACGTGGCGGGAAAGGTGTAAGTAATCAAGA
CACTAGCAGCAGGGTGCTCCACTGCATTGTGGGCGGCGTGCGTTCCGAGC
CCGCACTGGTGGAATCCGACAGAATGCTTTCGTGTGTGACGCCCAGAGCA
CCGATTGCTATCAGTGACGGTGGCGGCGTCGTCACTGTGTCCGTTACCGG
TAATGGAGGCGCTGATGCCAGCGCCGCGCCCGGCACCTTCAGCTACGTCC
AGTCGCCGACGTTAACCGGCCTCTTCCCCGGGCATGTCGATGAGCGCGGG
GGCATCGTCGTGTCTGTATATGGATCCGGTTTTATTCCCGGTCCCAATCT
CTCTTGCCGATTTGGCGGCTTGGAAATTGTCTCGGCCGAGTGGATTTCGC
CGGGCGAAGTGGCATGCGTAACGCCGCCAGCGGTAAATGGTCCGGGCGCC
GTAAGCGTTGAGATTTCCGACGATGGCACCAGCTTCCTTTCCGCGGCGGG
GCTATCTGTGACGTACCTGCGCGCATTCACCGTGGCGTCAGCTAAGCCGG
TGTCCGGCCCAGCATGCGGCGGCACCACCGTCGTTATTTCTGGCGGGGGC
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