mRNA_P-wetherbeei_contig19269.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19269.1.1
Unique NamemRNA_P-wetherbeei_contig19269.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19269.1.1 vs. uniprot
Match: A0A6L5C5N3_9INSE (40S ribosomal protein S29 n=4 Tax=cellular organisms TaxID=131567 RepID=A0A6L5C5N3_9INSE)

HSP 1 Score: 342 bits (878), Expect = 1.470e-107
Identity = 191/380 (50.26%), Postives = 256/380 (67.37%), Query Frame = 1
Query:    1 YEFLDRLINIAIPRIRDFRGLNGRAFDGRGNYSMGIKEQIIFPEIDYDKI-----------------DKFAKKRAELKTIIKDEDRSYEDREEARLRLQKLPRDSSPVRGRNRCRLTGRPHGYYRKFGLGRNELRRMAMQGHVPGLEGTDMSMQDPIGDMLTRIRNAQARAKRDVAMPASKRKSAIAEVLKNEGYITDYRVEGEGAAKQLHVELKYFRGKPVIERVWRVSRPGLRIYKTKDQLPSIIGGLGVAIVSTSKGLMSDREARAQGIGGEIICRSDMSRVGKMPIPLPSGVEVTIAGQTVSIKGAKGAMEHVVHVLVSVALQDGVLNVSANDASQASNALSGTTRALLNNMVTGVSAGFTRKLEIVGVGYRAQVQ 1089
            +EFLDRL+ IA+PR+RDFRG++G+ FDG+GNY+MG+KEQIIFPEI+ + I                  ++AKKRA L  II + + + E+R EARL+LQ +PR+SSP R RNRC LTGRP G +RKFGL RN++R +A          ++M+M DPI DMLTRIRNAQ   K  V+MP+S+ K AIA VLK+EGY+ D+ V        L + LKY+ G+PVIER+ R+S+PGLRIYK  D +P ++ GLGVAIVST KG+M+DR+ARA                 K PI LP+GVE+T+A Q +++KG  G ++   H  V+V ++   + V+  D +  ++A+ GT RA LNNMV GVS GF RKL++VGVGYRAQ Q
Sbjct:  284 FEFLDRLVTIALPRVRDFRGISGKGFDGQGNYNMGVKEQIIFPEIEIEAIMAKLALINREEKRRKLVAQYAKKRAALDAIINNANLTEEERYEARLKLQAMPRNSSPSRLRNRCELTGRPRGVFRKFGLCRNKIRELAF---------SEMAMSDPIADMLTRIRNAQLAEKASVSMPSSRLKVAIAAVLKDEGYVEDFSVRDADGKATLEIGLKYYAGRPVIERIERISKPGLRIYKGCDDIPRVMNGLGVAIVSTPKGVMTDRKARAS----------------KNPIVLPAGVEITVAEQ-IAVKGPLGTLKTAAHPSVTVTVEGQSVAVAKVDGAVNASAMWGTMRANLNNMVNGVSKGFERKLQLVGVGYRAQAQ 637          
BLAST of mRNA_P-wetherbeei_contig19269.1.1 vs. uniprot
Match: A0A699GMR7_TANCI (30S ribosomal protein S17, chloroplastic n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699GMR7_TANCI)

HSP 1 Score: 339 bits (869), Expect = 1.400e-101
Identity = 188/386 (48.70%), Postives = 249/386 (64.51%), Query Frame = 1
Query:    1 YEFLDRLINIAIPRIRDFRGLNGRAFDGRGNYSMGIKEQIIFPEIDYDKID-----------------------KFAKKRAELKTIIKDEDRSYEDREEARLRLQKLPRDSSPVRGRNRCRLTGRPHGYYRKFGLGRNELRRMAMQGHVPGLEGTDMSMQDPIGDMLTRIRNAQARAKRDVAMPASKRKSAIAEVLKNEGYITDYRVEGEGAAKQLHVELKYFRGKPVIERVWRVSRPGLRIYKTKDQLPSIIGGLGVAIVSTSKGLMSDREARAQGIGGEIICRSDMSRVGKMPIPLPSGVEVTIAGQTVSIKGAKGAMEHVVHVLVSVALQDGVLNVSANDASQASNALSGTTRALLNNMVTGVSAGFTRKLEIVGVGYRAQVQ 1089
            YEFLDR I +A+PR+RDFRG+NGR+FDGRGNY++G+KEQIIFPEI+YDKID                       KFA KRA LK II D+ +S E+R EARL+LQ LPR+S+P R RNRC +TGRP G +RKFGLGR +LR  AM+G +PG++                        K  VAMP+SK K AIA VLK+EGYI D+ V  +G   +L + LKY+ G+PVIER+ RVSRPGLR+YK KD++P+++ GLGVAIVST +G+M+DR+ARA                        +G +V I+ Q +++KG  G +   ++ LV V   DG L+    + S+ +NA+SGT RAL+NNMV GV+ GF +KL ++GVGY+AQ Q
Sbjct: 1789 YEFLDRFITVALPRVRDFRGVNGRSFDGRGNYNIGVKEQIIFPEIEYDKIDALREIMAKLALINREAKRVALANKFAAKRASLKAIIDDQSKSEEERYEARLKLQTLPRNSAPTRQRNRCAVTGRPRGTFRKFGLGRIKLREFAMRGEIPGVQ------------------------KATVAMPSSKVKVAIANVLKDEGYIEDFAVAEDGGKAELKIGLKYYVGRPVIERLERVSRPGLRVYKGKDEIPTVMNGLGVAIVSTPQGVMTDRKARAT-----------------------AGADVAISAQAITVKGPLGVLTQNLNGLVKVENNDGTLSFEPANDSREANAMSGTLRALVNNMVNGVTKGFEKKLNLIGVGYKAQAQ 2127          
BLAST of mRNA_P-wetherbeei_contig19269.1.1 vs. uniprot
Match: A0A812SBE4_9DINO (30S ribosomal protein S3, chloroplastic n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812SBE4_9DINO)

HSP 1 Score: 241 bits (616), Expect = 9.780e-68
Identity = 152/370 (41.08%), Postives = 222/370 (60.00%), Query Frame = 1
Query:    7 FLDRLINIAIPRIRDFRGLNGRAFDGRGNYSMGIKEQIIFPEIDYDKIDKFAKKRAELKTIIKDEDRSYEDREEARLRLQKLPRDSSPVRGRN----RCRLTGRPHGYYRKFGLGRNELRRMAMQGHVPGLEGTDMSMQDPIGDMLTRIRNAQARAKRDVAMPASKRKSAIAEVLKNEGYITDYRVEGEGAAKQLHVELKYF-RGKPVIERVWRVSRPGLRIYKTKDQLPSIIGGLGVAIVSTSKGLMSDREARAQGIGGEIICRSDMSRVGKMPIPLPSGVEVTIAGQTVSIKGAKGAMEHVVHVLVSVALQDGVLNVSAN-DASQASN----ALSGTTRALLNNMVTGVSAGFTRKLEIVGVGYRAQV 1086
            FLDRLIN+A+PR++DFRGL  ++FD  GNYSMG+ EQ IFPEID  ++         +  +      S  D  ++++ L+ L     P R R     RC +TGR  G YRKF     E   +  +G   G + T MSM DPI DMLTRIRN  +  K++V    SK    IA++L  EGYI  +    +G   ++ V LKY  RG+ +I  + R S+PG R+YK  +++ S + G+G++IVSTS G+MSDR+ R   +GGE++ ++ MSR+GK+P+ +PSGV V+++G T++I     ++   +   V+V+  +G   V+   D    SN    A  G TRAL+ NMV GV+ G+ +KLE+VGVGY AQ+
Sbjct: 1946 FLDRLINLAVPRMKDFRGLPDKSFDKAGNYSMGVTEQAIFPEIDMGRVS--FTHGMHINMVF-----SNSDPAKSKMVLESL---GMPFRKREAKVRRCEITGRARGVYRKF----REPPPLNPRGSKEGKDRT-MSMSDPIADMLTRIRNGVSARKKEVMCLNSKVCRGIAQILTEEGYIDGFDTIDDGRQGRIRVRLKYGDRGEDIIHVIKRESKPGCRVYKKAEEITSPLQGMGISIVSTSHGVMSDRKCREDRVGGELLDQA-MSRLGKLPVSVPSGVNVSVSGDTITISKGDKSLTQALRPEVNVSFDEGEKAVAVTIDEKDVSNKQVRAYWGMTRALIQNMVVGVTEGYEKKLEVVGVGYTAQL 2299          
BLAST of mRNA_P-wetherbeei_contig19269.1.1 vs. uniprot
Match: A0A2E0ZPH3_9ACTN (Multifunctional fusion protein n=3 Tax=root TaxID=1 RepID=A0A2E0ZPH3_9ACTN)

HSP 1 Score: 220 bits (560), Expect = 8.210e-66
Identity = 126/236 (53.39%), Postives = 168/236 (71.19%), Query Frame = 1
Query:  400 MSMQDPIGDMLTRIRNAQARAKRDVAMPASKRKSAIAEVLKNEGYITDYRVEGE---GAAKQLHVELKYFRGKP-VIERVWRVSRPGLRIYKTKDQLPSIIGGLGVAIVSTSKGLMSDREARAQGIGGEIIC-----RSDMSRVGKMPIPLPSGVEVTIAGQTVSIKGAKGAMEHVVHVLVSVALQDGVLNVSANDASQASNALSGTTRALLNNMVTGVSAGFTRKLEIVGVGYRA 1080
            M+M DP+ DMLTR+RNA       V+MP+SK+K A+A+VLK+EGYI DY V GE   G   +L ++LKY   +  VI  + RVS+PGLRIY+    +P ++GGLGVA+VSTS+GLMSDREAR + IGGEI+C     R DMSR+GK PI +PSGVEVTI  Q V++KG KG+++  V   ++V  +  VL+V   D  + + A+ G TR+L+NNMV GVS GF ++L+IVGVGYRA
Sbjct:    1 MTMTDPMADMLTRLRNANQAMHDGVSMPSSKQKVALADVLKSEGYIADYTV-GEAQRGPGMELTIQLKYSPERQRVISGLQRVSKPGLRIYRKSGTIPRVLGGLGVAVVSTSRGLMSDREARRRRIGGEILCYVWXGRLDMSRIGKFPITVPSGVEVTITDQNVAVKGPKGSLDLDVAEDITVRQEGDVLHVERPDDERRNRAMHGLTRSLVNNMVIGVSXGFMKELQIVGVGYRA 235          
BLAST of mRNA_P-wetherbeei_contig19269.1.1 vs. uniprot
Match: A0A7R9AK66_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9AK66_9CRUS)

HSP 1 Score: 209 bits (532), Expect = 4.780e-63
Identity = 120/216 (55.56%), Postives = 155/216 (71.76%), Query Frame = 1
Query:  427 MLTRIRNAQARAKRDVAMPASKRKSAIAEVLKNEGYITDYR---VEGEGAAKQLHVELKYFRGKPVIERVWRVSRPGLRIYKTKDQLPSIIGGLGVAIVSTSKGLMSDREARAQGIGGEIICRSDMSRVGKMPIPLPSGVEVTIAGQTVSIKGAKGAMEHVVHVLVSVALQDGVLNVSAN-DASQASNALSGTTRALLNNMVTGVSAGFTRKLEIV 1062
            MLTRIRN Q   K  VA PASK+K+AI EVL++EGY+  +    VEG+       V+LKYF+GKPVI +V RVSRPGLRI++  D+LP+++GG G+AIVSTSKG+MSDR ARA G GGE     +MSR+ K  + LP GVEV+I+GQ++ +KG+KG+ + VVH  V V+ +D VL   A  D   A  AL+GTTRAL NNMV GVS GF +KL++V
Sbjct:    1 MLTRIRNGQMANKAQVAFPASKQKNAILEVLQSEGYVASFETGTVEGKPVTT---VKLKYFQGKPVISKVKRVSRPGLRIFRGTDELPTVMGGYGIAIVSTSKGVMSDRAARASGQGGE--AGFEMSRIAKKALTLPKGVEVSISGQSLKVKGSKGSFDFVVHDAVEVSQEDNVLKFKAKRDGDSAGWALAGTTRALANNMVIGVSQGFEKKLQLV 211          
BLAST of mRNA_P-wetherbeei_contig19269.1.1 vs. uniprot
Match: M3S4D6_ENTHI (Ribosomal protein L6, putative n=6 Tax=cellular organisms TaxID=131567 RepID=M3S4D6_ENTHI)

HSP 1 Score: 211 bits (537), Expect = 6.480e-63
Identity = 121/228 (53.07%), Postives = 150/228 (65.79%), Query Frame = 1
Query:  406 MQDPIGDMLTRIRNAQARAKRDVAMPASKRKSAIAEVLKNEGYITDYRVEGEGAAKQLHVELKYFRGKPVIERVWRVSRPGLRIYKTKDQLPSIIGGLGVAIVSTSKGLMSDREARAQGIGGEIICRSDMSRVGKMPIPLPSGVEVTIAGQTVSIKGAKGAMEHVVHVLVSVALQDGVLNVSANDASQASNALSGTTRALLNNMVTGVSAGFTRKLEIVGVGYRAQVQ 1089
            MQDP+ DMLTRIRNAQ   K  V+MP+SK K+A+A+VLK+EGYI D++V  E +   L +ELKYF GKPVIE + R SRPGLR YK  DQLP + GGLGV                             MSRV K P+ LP+GVEV +AGQ +SIKGAKGA+E  VH  V V  + G L  +A +  Q + A++GTTRAL+NNMV GVS GF RKL++VGVGY+AQ +
Sbjct:    1 MQDPLADMLTRIRNAQMAEKAVVSMPSSKLKAAVAKVLKDEGYIADFQVSAE-SKPSLSIELKYFEGKPVIEELKRSSRPGLRQYKAVDQLPKVRGGLGV-----------------------------MSRVAKNPVRLPAGVEVNLAGQALSIKGAKGALELKVHPSVEVTQESGELRFAARNGDQQTRAMAGTTRALVNNMVVGVSQGFERKLQLVGVGYKAQAK 198          
BLAST of mRNA_P-wetherbeei_contig19269.1.1 vs. uniprot
Match: A0A354F7C5_9BACT (Multifunctional fusion protein n=4 Tax=Nitrospirae TaxID=40117 RepID=A0A354F7C5_9BACT)

HSP 1 Score: 204 bits (520), Expect = 6.010e-60
Identity = 107/231 (46.32%), Postives = 159/231 (68.83%), Query Frame = 1
Query:  400 MSMQDPIGDMLTRIRNAQARAKRDVAMPASKRKSAIAEVLKNEGYITDYRVEGEGAAKQLHVELKYFR-GKPVIERVWRVSRPGLRIYKTKDQLPSIIGGLGVAIVSTSKGLMSDREARAQGIGGEIICRSDMSRVGKMPIPLPSGVEVTIAGQTVSIKGAKGAMEHVVHVLVSVALQDGVLNVSANDASQASNALSGTTRALLNNMVTGVSAGFTRKLEIVGVGYRAQVQ 1089
            M M DPI DMLTRIRNA  +    V +P S+ K+ IA++LK  G+I+DY++ GEG AK + V L+Y R   P+I  + RVS+PG R+Y  KD++  ++GG+GV I+STSKG+++DR+A+  G+GGE   + +MSR+GK PI +P GV+V I GQ V++KG KG+++      +S+  +D VL+V+  +  + + AL G +R L+ NM+ GV  GF + LEI GVGY+A +Q
Sbjct:    1 MVMTDPIADMLTRIRNASRQGHATVEIPLSRLKADIAKILKESGFISDYKIAGEGLAKNICVYLRYTREDTPIITGIKRVSKPGCRVYAAKDEVKKVMGGIGVTILSTSKGVVTDRDAKRIGVGGEXX-KGNMSRIGKKPIEIPKGVDVNINGQNVAVKGPKGSLQKSFPSEISITKKDDVLSVTIANTDKETGALHGLSRTLIANMIEGVMKGFEKTLEISGVGYKAMLQ 230          
BLAST of mRNA_P-wetherbeei_contig19269.1.1 vs. uniprot
Match: A0A6A5L8X8_LUPAL (30S ribosomal protein S17, chloroplastic n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L8X8_LUPAL)

HSP 1 Score: 212 bits (540), Expect = 2.690e-58
Identity = 146/388 (37.63%), Postives = 191/388 (49.23%), Query Frame = 1
Query:    1 YEFLDRLINIAIPRIRDFRGLNGRAFDGRGNYSMGIKEQIIFPEIDYDKIDK----------------------FAKKRAELKTIIKDEDRSYEDREEARLRLQKLPRDSSPVRGRNRCRLTGRPHGYYRKFGLGRNELRRMAMQGHVPGLEGTDMSMQDPIGDMLTRIRNAQARAKRDVAMPASKRKSAIAEVLKNEGYITDYRVEGEGAAKQLHVELKY--FRGKPVIERVWRVSRPGLRIYKTKDQLPSIIGGLGVAIVSTSKGLMSDREARAQGIGGEIICRSDMSRVGKMPIPLPSGVEVTI-AGQTVSIKGAKGAMEHVVHVLVSVALQDGVLNVSANDASQASNALSGTTRALLNNMVTGVSAGFTRKLEIVGVGYRAQVQ 1089
            YEFLDRLI +A+PRIRDF+G+N + FDGRGNY++GI EQIIFPEI+ DKI+K                      FA+KRA LK         YE        L KLP+ +SPV+  NRC+LTGRP GY R+FG+ R   R MA+ G                                                     YI +Y+ E  G    + V LKY      P I  + R+S+PGLR Y   D +P ++ GLG+AI+STSKG+M+D+EAR                  K PI L  GV V++ A   V++KG KG +   V   +++  +   L V      +   AL G  RALLNNMV GV+ G+  + E+VGVGYRA  Q
Sbjct:  315 YEFLDRLIAVALPRIRDFKGINDKGFDGRGNYTLGISEQIIFPEINIDKINKIQAMAKEGVKAREVKRAKLVAKFAEKRAALKAAG-----DYEA-------LDKLPKAASPVKLHNRCKLTGRPRGYMRQFGISRVTFREMALAG-----------------------------------------------------YIANYKFEENGPQGTIKVALKYHPITKVPAIRSINRISKPGLRKYAGMDTMPRVLNGLGIAILSTSKGVMTDKEAR------------------KAPIALAGGVTVSVSADNVVTVKGPKGELHQAVDRDITIEQEGDQLLVKRPSDQKRHKALHGLYRALLNNMVVGVTTGYKIEQELVGVGYRATNQ 619          
BLAST of mRNA_P-wetherbeei_contig19269.1.1 vs. uniprot
Match: A0A812IPA6_SYMPI (RpsE protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812IPA6_SYMPI)

HSP 1 Score: 197 bits (500), Expect = 7.990e-55
Identity = 111/230 (48.26%), Postives = 148/230 (64.35%), Query Frame = 1
Query:  400 MSMQDPIGDMLTRIRNAQARAKRDVAMPASKRKSAIAEVLKNEGYITDYRVEGEGAAKQLHVELKYFRGKPVIERVWRVSRPGLRIYKTKDQLPSIIGGLGVAIVSTSKGLMSDREARAQGIGGEIICRSDMSRVGKMPIPLPSGVEVTIAGQTVSIKGAKGAMEHVVHVLVSVALQDGVLNVSANDASQASNALSGTTRALLNNMVTGVSAGFTRKLEIVGVGYRAQVQ 1089
            M+MQDPI D+LTRIRNAQ    ++V MP SK K +I +VL +EG+I  +  + E     L+V+L+Y  G PVIE + RVSRPGLRIYK   ++PS+ GGLGVAIVST+KG+M+D+ ARA G+GGE++C +                        +S+KG+KG M   VH  V +   DG L  +A +    S A++GT RA++ NMVTGVS GF R+LE+ GVGYRAQ Q
Sbjct:    1 MTMQDPISDLLTRIRNAQMAGHKNVEMPNSKIKRSILKVLLDEGFIDGFTADEE-VKSALNVDLRYHNGSPVIEEIKRVSRPGLRIYKESSEIPSVRGGLGVAIVSTNKGVMTDKRARAAGVGGEVLCTA------------------------LSVKGSKGEMNFGVHNAVIINQGDGELTFAARNGDTGSRAMAGTMRAVVQNMVTGVSTGFERRLELQGVGYRAQAQ 205          
BLAST of mRNA_P-wetherbeei_contig19269.1.1 vs. uniprot
Match: A0A8J5DIZ9_9CHEL (40S ribosomal protein S29 n=1 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J5DIZ9_9CHEL)

HSP 1 Score: 184 bits (467), Expect = 1.660e-53
Identity = 107/210 (50.95%), Postives = 133/210 (63.33%), Query Frame = 1
Query:  154 KFAKKRAELKTIIKDEDRSYEDREEARLRLQKLPRDSSPVRGRNRCRLTGRPHGYYRKFGLGRNELRRMAMQGHVPGLEGTDMSMQDPIGDMLTRIRNAQARAKRDVAMPASKRKSAIAEVLKNEGYITDYRVEGEGAAKQLHVELKYFRGKPVIERVWRVSRPGLRIYKTKDQLPSIIGGLGVAIVSTSKGLMSDREARAQGIGGEIIC 783
            K+AK+RAELK II+    S+E+   A   LQKLPR+SS VR RNRC +TGRPHG Y KFGL RN+LR  AM+G +PGL                                AS +KSAI +VL++EGYI+ Y            V LKYF+G+PVI  + R+SRPGLRI+K K+ LPS++ GLGVAIVSTSKG+MSDR ARA G GGE++C
Sbjct:   14 KYAKRRAELKEIIRSPKSSFEEVMAATDSLQKLPRNSSKVRQRNRCVITGRPHGVYSKFGLCRNKLRESAMEGDIPGLT------------------------------KASCKKSAILDVLRDEGYISGYETADVEGKPVTTVALKYFQGEPVINTLKRISRPGLRIFKGKEDLPSVMSGLGVAIVSTSKGVMSDRAARAVGHGGEVLC 193          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19269.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L5C5N3_9INSE1.470e-10750.2640S ribosomal protein S29 n=4 Tax=cellular organis... [more]
A0A699GMR7_TANCI1.400e-10148.7030S ribosomal protein S17, chloroplastic n=1 Tax=T... [more]
A0A812SBE4_9DINO9.780e-6841.0830S ribosomal protein S3, chloroplastic n=1 Tax=Sy... [more]
A0A2E0ZPH3_9ACTN8.210e-6653.39Multifunctional fusion protein n=3 Tax=root TaxID=... [more]
A0A7R9AK66_9CRUS4.780e-6355.56Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
M3S4D6_ENTHI6.480e-6353.07Ribosomal protein L6, putative n=6 Tax=cellular or... [more]
A0A354F7C5_9BACT6.010e-6046.32Multifunctional fusion protein n=4 Tax=Nitrospirae... [more]
A0A6A5L8X8_LUPAL2.690e-5837.6330S ribosomal protein S17, chloroplastic n=1 Tax=L... [more]
A0A812IPA6_SYMPI7.990e-5548.26RpsE protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]
A0A8J5DIZ9_9CHEL1.660e-5350.9540S ribosomal protein S29 n=1 Tax=Nymphon striatum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19269contigP-wetherbeei_contig19269:2..1295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog59538.XP_005977603.1
PFAMsRibosomal_L6,Ribosomal_S8
Model size1089
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.83e-52
EggNOG OGsCOG0096@1|root,COG0097@1|root,KOG1754@2759|Eukaryota,KOG3254@2759|Eukaryota,39WCS@33154|Opisthokonta,3C2SB@33208|Metazoa
DescriptionRibosomal protein L6
Cds size1089
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186168.4559555-CDS-P-wetherbeei_contig19269:1..1541683186168.4559555-CDS-P-wetherbeei_contig19269:1..154Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19269 2..154 +
1683186168.4680834-CDS-P-wetherbeei_contig19269:317..5511683186168.4680834-CDS-P-wetherbeei_contig19269:317..551Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19269 318..551 +
1683186168.4773228-CDS-P-wetherbeei_contig19269:578..9721683186168.4773228-CDS-P-wetherbeei_contig19269:578..972Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19269 579..972 +
1683186168.486877-CDS-P-wetherbeei_contig19269:987..12951683186168.486877-CDS-P-wetherbeei_contig19269:987..1295Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19269 988..1295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19269.1.1prot_P-wetherbeei_contig19269.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19269 2..1295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19269.1.1

>prot_P-wetherbeei_contig19269.1.1 ID=prot_P-wetherbeei_contig19269.1.1|Name=mRNA_P-wetherbeei_contig19269.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=363bp
YEFLDRLINIAIPRIRDFRGLNGRAFDGRGNYSMGIKEQIIFPEIDYDKI
DKFAKKRAELKTIIKDEDRSYEDREEARLRLQKLPRDSSPVRGRNRCRLT
GRPHGYYRKFGLGRNELRRMAMQGHVPGLEGTDMSMQDPIGDMLTRIRNA
QARAKRDVAMPASKRKSAIAEVLKNEGYITDYRVEGEGAAKQLHVELKYF
RGKPVIERVWRVSRPGLRIYKTKDQLPSIIGGLGVAIVSTSKGLMSDREA
RAQGIGGEIICRSDMSRVGKMPIPLPSGVEVTIAGQTVSIKGAKGAMEHV
VHVLVSVALQDGVLNVSANDASQASNALSGTTRALLNNMVTGVSAGFTRK
LEIVGVGYRAQVQ
back to top

mRNA from alignment at P-wetherbeei_contig19269:2..1295+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19269.1.1 ID=mRNA_P-wetherbeei_contig19269.1.1|Name=mRNA_P-wetherbeei_contig19269.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1294bp|location=Sequence derived from alignment at P-wetherbeei_contig19269:2..1295+ (Phaeothamnion wetherbeei SAG_119_79)
TACGAGTTCCTGGATCGCCTGATTAATATCGCGATCCCGCGTATCCGCGA CTTCCGCGGCCTGAACGGCCGCGCGTTCGACGGTCGTGGCAACTACAGCA TGGGTATCAAAGAGCAGATCATCTTCCCGGAAATTGATTACGACAAAATC GATGTGCTGCGGGGCATGGACATCTGCATCACCACCACCGCCCGCACCGA CGAAGAAGGCCGGGCATTGTTGGAAGCGTTCCGCTTCCCGTTGAGGACCT AAGGGCAGGCACATGGCGAAGAAATCCATGGTCAATCGCGAAGTGAAGCG GGCCGAACTGGCGAAGAAGTTCGCCAAGAAGCGCGCCGAGCTCAAGACCA TCATCAAAGACGAAGACCGCTCCTACGAGGACCGTGAAGAAGCGCGCCTG CGTTTGCAGAAGCTGCCGCGCGATTCGAGCCCGGTGCGTGGTCGCAATCG TTGCCGCCTGACCGGACGTCCCCACGGGTACTACCGGAAGTTTGGTCTCG GTCGTAATGAATTACGTCGCATGGCCATGCAGGGACATGTGCCCGGCCTG GTGAAGGCGAGCTGGTAAGGCGGCGAGGAAGGTACTGATATGAGCATGCA AGATCCCATCGGCGATATGTTGACCCGCATCCGCAACGCGCAGGCCCGTG CCAAGCGCGACGTGGCGATGCCCGCGTCGAAGCGCAAATCCGCGATCGCC GAAGTACTGAAGAACGAAGGTTACATCACCGATTACCGGGTTGAAGGTGA GGGTGCCGCCAAGCAGCTGCACGTTGAACTCAAGTACTTCCGCGGTAAAC CGGTCATCGAGCGCGTGTGGCGTGTCAGCCGGCCCGGCTTGCGCATTTAC AAAACCAAGGACCAGTTGCCGTCCATTATCGGAGGCCTTGGCGTCGCCAT TGTGTCGACTTCCAAGGGGCTGATGAGCGACCGCGAAGCGCGTGCGCAGG GCATCGGCGGCGAAATTATCTGTTCCATTTATTAAGGTCGTAGCGACATG TCTAGAGTCGGGAAAATGCCGATTCCGTTGCCGTCCGGAGTCGAAGTAAC GATCGCCGGGCAAACGGTCAGCATCAAGGGTGCAAAGGGCGCCATGGAGC ACGTGGTGCATGTGCTGGTGTCGGTGGCATTGCAGGACGGCGTGTTGAAC GTGTCCGCGAATGACGCCAGCCAGGCATCCAATGCCTTGTCGGGTACGAC CCGCGCGCTGCTGAACAATATGGTGACGGGCGTGTCGGCCGGTTTCACGC GCAAGCTGGAAATCGTCGGCGTCGGTTACCGCGCGCAGGTGCAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig19269:2..1295+

>mRNA_P-wetherbeei_contig19269.1.1 ID=mRNA_P-wetherbeei_contig19269.1.1|Name=mRNA_P-wetherbeei_contig19269.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1089bp|location=Sequence derived from alignment at P-wetherbeei_contig19269:2..1295+ (Phaeothamnion wetherbeei SAG_119_79)
TACGAGTTCCTGGATCGCCTGATTAATATCGCGATCCCGCGTATCCGCGA
CTTCCGCGGCCTGAACGGCCGCGCGTTCGACGGTCGTGGCAACTACAGCA
TGGGTATCAAAGAGCAGATCATCTTCCCGGAAATTGATTACGACAAAATC
GATAAGTTCGCCAAGAAGCGCGCCGAGCTCAAGACCATCATCAAAGACGA
AGACCGCTCCTACGAGGACCGTGAAGAAGCGCGCCTGCGTTTGCAGAAGC
TGCCGCGCGATTCGAGCCCGGTGCGTGGTCGCAATCGTTGCCGCCTGACC
GGACGTCCCCACGGGTACTACCGGAAGTTTGGTCTCGGTCGTAATGAATT
ACGTCGCATGGCCATGCAGGGACATGTGCCCGGCCTGGAAGGTACTGATA
TGAGCATGCAAGATCCCATCGGCGATATGTTGACCCGCATCCGCAACGCG
CAGGCCCGTGCCAAGCGCGACGTGGCGATGCCCGCGTCGAAGCGCAAATC
CGCGATCGCCGAAGTACTGAAGAACGAAGGTTACATCACCGATTACCGGG
TTGAAGGTGAGGGTGCCGCCAAGCAGCTGCACGTTGAACTCAAGTACTTC
CGCGGTAAACCGGTCATCGAGCGCGTGTGGCGTGTCAGCCGGCCCGGCTT
GCGCATTTACAAAACCAAGGACCAGTTGCCGTCCATTATCGGAGGCCTTG
GCGTCGCCATTGTGTCGACTTCCAAGGGGCTGATGAGCGACCGCGAAGCG
CGTGCGCAGGGCATCGGCGGCGAAATTATCTGTCGTAGCGACATGTCTAG
AGTCGGGAAAATGCCGATTCCGTTGCCGTCCGGAGTCGAAGTAACGATCG
CCGGGCAAACGGTCAGCATCAAGGGTGCAAAGGGCGCCATGGAGCACGTG
GTGCATGTGCTGGTGTCGGTGGCATTGCAGGACGGCGTGTTGAACGTGTC
CGCGAATGACGCCAGCCAGGCATCCAATGCCTTGTCGGGTACGACCCGCG
CGCTGCTGAACAATATGGTGACGGGCGTGTCGGCCGGTTTCACGCGCAAG
CTGGAAATCGTCGGCGTCGGTTACCGCGCGCAGGTGCAG
back to top