mRNA_P-wetherbeei_contig19255.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19255.1.1
Unique NamemRNA_P-wetherbeei_contig19255.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19255.1.1 vs. uniprot
Match: A0A6V1W3N7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1W3N7_HETAK)

HSP 1 Score: 81.6 bits (200), Expect = 1.080e-16
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:   34 QQNEANLLLMGVKENQEMWTRVDAILEQSSDASTKFFALQILSDAIQVRWKILPAHQ 204
            QQ  AN +LMG+KEN +MW R DAILEQSS+ +T+FFALQIL+D I  RWKILPA Q
Sbjct:   34 QQATANTILMGLKENDQMWLRADAILEQSSNPNTRFFALQILTDTINTRWKILPADQ 90
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BLAST of mRNA_P-wetherbeei_contig19255.1.1 vs. uniprot
Match: A0A2A6C0V1_PRIPA (Xpo-1 n=2 Tax=Pristionchus pacificus TaxID=54126 RepID=A0A2A6C0V1_PRIPA)

HSP 1 Score: 75.1 bits (183), Expect = 3.330e-14
Identity = 38/61 (62.30%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:   22 GGSEQQNEANLLLMGVKENQEMWTRVDAILEQSSDASTKFFALQILSDAIQVRWKILPAHQ 204
            G  E Q +ANLLLM VKEN   WT+VDAILE S  A +K+FALQIL   IQ RWK LP  Q
Sbjct:   60 GVGEDQRQANLLLMEVKENPSSWTKVDAILEYSKQAESKYFALQILEGTIQTRWKTLPTVQ 120
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BLAST of mRNA_P-wetherbeei_contig19255.1.1 vs. uniprot
Match: A0A6H5GHW8_9HEMI (Importin N-terminal domain-containing protein n=3 Tax=Miridae TaxID=30083 RepID=A0A6H5GHW8_9HEMI)

HSP 1 Score: 70.9 bits (172), Expect = 1.030e-12
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   19 TGGSEQQNEANLLLMGVKENQEMWTRVDAILEQSSDASTKFFALQILSDAIQVRWKILPAHQ 204
            TG  EQQ  A  +L  +KE+ + WTRVDAILE SS+  TK+FALQIL   I+ RWK+LP +Q
Sbjct:   32 TGIGEQQRIAQEVLTNLKEHPDAWTRVDAILEYSSNQETKYFALQILEQVIKTRWKVLPRNQ 93
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BLAST of mRNA_P-wetherbeei_contig19255.1.1 vs. uniprot
Match: A0A161MCF9_TRIIF (Exportin-1 (Fragment) n=1 Tax=Triatoma infestans TaxID=30076 RepID=A0A161MCF9_TRIIF)

HSP 1 Score: 68.2 bits (165), Expect = 2.110e-12
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   19 TGGSEQQNEANLLLMGVKENQEMWTRVDAILEQSSDASTKFFALQILSDAIQVRWKILPAHQ 204
            TG  EQQ  A  +L  +KE+ + WTRVDAILE S++  TK++ALQIL   I+ RWK+LP +Q
Sbjct:   36 TGMGEQQRIAQEVLTNLKEHPDAWTRVDAILEFSTNQQTKYYALQILEQVIKTRWKVLPRNQ 97
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BLAST of mRNA_P-wetherbeei_contig19255.1.1 vs. uniprot
Match: A0A6A4K0W0_APOLU (Importin N-terminal domain-containing protein n=1 Tax=Apolygus lucorum TaxID=248454 RepID=A0A6A4K0W0_APOLU)

HSP 1 Score: 69.7 bits (169), Expect = 2.630e-12
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   19 TGGSEQQNEANLLLMGVKENQEMWTRVDAILEQSSDASTKFFALQILSDAIQVRWKILPAHQ 204
            TG  EQQ  A  +L  +KE+ + WTRVDAILE SS+  TK++ALQIL   I+ RWK+LP +Q
Sbjct:    3 TGIGEQQRIAQEVLTNLKEHPDAWTRVDAILEYSSNQETKYYALQILEQVIKTRWKVLPRNQ 64
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BLAST of mRNA_P-wetherbeei_contig19255.1.1 vs. uniprot
Match: UPI00193DD668 (exportin-1-like n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193DD668)

HSP 1 Score: 68.9 bits (167), Expect = 4.910e-12
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   19 TGGSEQQNEANLLLMGVKENQEMWTRVDAILEQSSDASTKFFALQILSDAIQVRWKILPAHQ 204
            TG  EQQ  A  LL  +KE+ + WTRVD ILE S++  TK+FALQIL   I+ RWK+LP +Q
Sbjct:   34 TGIGEQQRVAQELLTTLKEHPDAWTRVDTILEYSTNQQTKYFALQILEQVIKTRWKVLPRNQ 95
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BLAST of mRNA_P-wetherbeei_contig19255.1.1 vs. uniprot
Match: A0A482WNY4_LAOST (Importin N-terminal domain-containing protein n=2 Tax=Laodelphax striatellus TaxID=195883 RepID=A0A482WNY4_LAOST)

HSP 1 Score: 68.9 bits (167), Expect = 4.920e-12
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   19 TGGSEQQNEANLLLMGVKENQEMWTRVDAILEQSSDASTKFFALQILSDAIQVRWKILPAHQ 204
            TG  EQQ  A  LL  +KE+ + WTRVD ILE S++  TK+FALQIL   I+ RWK+LP +Q
Sbjct:   34 TGIGEQQRVAQELLTTLKEHPDAWTRVDTILEYSTNQQTKYFALQILEQVIKTRWKVLPRNQ 95
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BLAST of mRNA_P-wetherbeei_contig19255.1.1 vs. uniprot
Match: UPI00083BAD5C (exportin-1 n=1 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083BAD5C)

HSP 1 Score: 68.6 bits (166), Expect = 6.710e-12
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:   10 SFPTGGSEQQNEANLLLMGVKENQEMWTRVDAILEQSSDASTKFFALQILSDAIQVRWKILPAHQ 204
            S  +GG E Q  A  +L  +KE+ + WTRVD ILE SS+  TK++ALQIL   I+ RWK+LP +Q
Sbjct:   30 SMYSGGGEAQRVAQKVLTTLKEHPDAWTRVDTILEYSSNQQTKYYALQILEQVIKTRWKVLPRNQ 94
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BLAST of mRNA_P-wetherbeei_contig19255.1.1 vs. uniprot
Match: A0A8I6RU48_CIMLE (Importin N-terminal domain-containing protein n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6RU48_CIMLE)

HSP 1 Score: 68.6 bits (166), Expect = 6.710e-12
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   19 TGGSEQQNEANLLLMGVKENQEMWTRVDAILEQSSDASTKFFALQILSDAIQVRWKILPAHQ 204
            TG  EQQ  A  +L  +KE+ + WTRVDAILE S++  TK++ALQIL   I+ RWKILP +Q
Sbjct:   32 TGIGEQQKVAQEVLTSLKEHPDAWTRVDAILEFSTNQQTKYYALQILEQVIKTRWKILPRNQ 93
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BLAST of mRNA_P-wetherbeei_contig19255.1.1 vs. uniprot
Match: A0A0C2FTL6_9BILA (Importin-beta protein n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2FTL6_9BILA)

HSP 1 Score: 65.5 bits (158), Expect = 7.100e-12
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   31 EQQNEANLLLMGVKENQEMWTRVDAILEQSSDASTKFFALQILSDAIQVRWKILPAHQ 204
            E+Q  AN++L+ +KEN   WT+VDAILE S  A +K+FALQIL   IQ +WK LP  Q
Sbjct:    8 EEQKLANMILVELKENPNSWTKVDAILEYSDLAESKYFALQILESVIQTKWKSLPLVQ 65
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19255.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1W3N7_HETAK1.080e-1668.42Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2A6C0V1_PRIPA3.330e-1462.30Xpo-1 n=2 Tax=Pristionchus pacificus TaxID=54126 R... [more]
A0A6H5GHW8_9HEMI1.030e-1256.45Importin N-terminal domain-containing protein n=3 ... [more]
A0A161MCF9_TRIIF2.110e-1253.23Exportin-1 (Fragment) n=1 Tax=Triatoma infestans T... [more]
A0A6A4K0W0_APOLU2.630e-1254.84Importin N-terminal domain-containing protein n=1 ... [more]
UPI00193DD6684.910e-1254.84exportin-1-like n=1 Tax=Nilaparvata lugens TaxID=1... [more]
A0A482WNY4_LAOST4.920e-1254.84Importin N-terminal domain-containing protein n=2 ... [more]
UPI00083BAD5C6.710e-1250.77exportin-1 n=1 Tax=Nicrophorus vespilloides TaxID=... [more]
A0A8I6RU48_CIMLE6.710e-1254.84Importin N-terminal domain-containing protein n=1 ... [more]
A0A0C2FTL6_9BILA7.100e-1255.17Importin-beta protein n=1 Tax=Ancylostoma duodenal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19255contigP-wetherbeei_contig19255:566..1248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog121225.PHUM345840-PA
Preferred nameXPO1
PFAMsCRM1_C,IBN_N,Xpo1
Model size204
Max annot lvl33208|Metazoa
KEGG koko:K14290
KEGG TC1.I.1
KEGG Pathwayko03008,ko03013,ko04013,ko05164,ko05166,ko05169,map03008,map03013,map04013,map05164,map05166,map05169
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000055,GO:0000056,GO:0000122,GO:0000775,GO:0000776,GO:0003674,GO:0005049,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005642,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008565,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010608,GO:0010629,GO:0010824,GO:0012505,GO:0015030,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016032,GO:0016604,GO:0019058,GO:0019219,GO:0019222,GO:0019904,GO:0022613,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031329,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032386,GO:0032879,GO:0032880,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033365,GO:0033750,GO:0034504,GO:0034613,GO:0042175,GO:0042176,GO:0042221,GO:0042254,GO:0042493,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043488,GO:0044085,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044766,GO:0045184,GO:0045892,GO:0045934,GO:0046605,GO:0046794,GO:0046822,GO:0046825,GO:0046907,GO:0048519,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051246,GO:0051252,GO:0051253,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051726,GO:0060255,GO:0060341,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070507,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0075733,GO:0080090,GO:0090087,GO:0098589,GO:0098687,GO:0098805,GO:0140104,GO:0140142,GO:1902579,GO:1902679,GO:1903311,GO:1903506,GO:1903507,GO:1903827,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Exons2
Evalue2.1e-14
EggNOG OGsCOG5101@1|root,KOG2020@2759|Eukaryota,38D8Y@33154|Opisthokonta,3BCU1@33208|Metazoa,3CU9H@33213|Bilateria,41W73@6656|Arthropoda,3SI1K@50557|Insecta
DescriptionRan GTPase binding. It is involved in the biological process described with intracellular protein transport
Cds size204
COG categoryUY
BRITEko00000,ko00001,ko03009,ko03016,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186168.1145537-CDS-P-wetherbeei_contig19255:565..6161683186168.1145537-CDS-P-wetherbeei_contig19255:565..616Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19255 566..616 -
1683186168.1365757-CDS-P-wetherbeei_contig19255:1095..12481683186168.1365757-CDS-P-wetherbeei_contig19255:1095..1248Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19255 1096..1248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19255.1.1prot_P-wetherbeei_contig19255.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19255 566..1248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19255.1.1

>prot_P-wetherbeei_contig19255.1.1 ID=prot_P-wetherbeei_contig19255.1.1|Name=mRNA_P-wetherbeei_contig19255.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=68bp
MFRSFPTGGSEQQNEANLLLMGVKENQEMWTRVDAILEQSSDASTKFFAL
QILSDAIQVRWKILPAHQ
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mRNA from alignment at P-wetherbeei_contig19255:566..1248-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19255.1.1 ID=mRNA_P-wetherbeei_contig19255.1.1|Name=mRNA_P-wetherbeei_contig19255.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=683bp|location=Sequence derived from alignment at P-wetherbeei_contig19255:566..1248- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCCGCTCCTTTCCCACCGGCGGGTCCGAGCAGCAAAACGAGGCGAA
CCTGCTGCTAATGGGCGTGAAGGAGAACCAGGAGATGTGGACACGCGTGG
ACGCCATCTTGGAGCAGTCGAGCGACGCGTCAACGAAGTTCTTCGCTTTG
CAGGTTAGAAGAATTGTTTCCGCAGCGCGCCACGGCCGCTGCCGTTTTCT
GCAGCTTTTTCGAAGCTGCCTTTCGCTGGTGTCCGTCTGCTGGCCGAATC
TAATCCTTGCCGCGCTCCGCCCGAGGCGCTTGCCGGTTCTGTGGCTGGTG
AGGTTGCTGCCGAAAGTTTCCAGATCGCTCTTGTCTTGATGCAATGTCAC
TCGCCCGCCTGGCAGCCGCCGAGCGTCGCGCTTCTTTCTGCGGCTCCGGA
ATCGCTTGGGCCTGTGGCGTTGCTGTTGTCGCCGCGAAACTCGCGCCTTC
AGCGGCTTTTCCTTTGCGGCGGTCGGCGGCCTTTTGGTGTGGGCCCACCT
TCCCTTGGTTGGCATGTACACACTCACACACTTGGACGAATGTACCTACT
GTGCTTCTGCGGGTATCTGAGTACTTTTGGGGGTTAAACAAAAACGGAAA
TGGAAAACTGTCGAACTTTGTGCGGCCGGCAGATTCTGAGCGATGCCATC
CAGGTGCGATGGAAGATCCTGCCGGCGCATCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19255:566..1248-

>mRNA_P-wetherbeei_contig19255.1.1 ID=mRNA_P-wetherbeei_contig19255.1.1|Name=mRNA_P-wetherbeei_contig19255.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig19255:566..1248- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCCGCTCCTTTCCCACCGGCGGGTCCGAGCAGCAAAACGAGGCGAA
CCTGCTGCTAATGGGCGTGAAGGAGAACCAGGAGATGTGGACACGCGTGG
ACGCCATCTTGGAGCAGTCGAGCGACGCGTCAACGAAGTTCTTCGCTTTG
CAGATTCTGAGCGATGCCATCCAGGTGCGATGGAAGATCCTGCCGGCGCA
TCAG
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