mRNA_P-wetherbeei_contig19246.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19246.1.1
Unique NamemRNA_P-wetherbeei_contig19246.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19246.1.1 vs. uniprot
Match: A0A7S2I006_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I006_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.760e-30
Identity = 49/54 (90.74%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:    1 SPKVATMEKLEAGGKKVYCRCWQSGTFPLCDGTHAKHNEETGDNVGPLIVSVAK 162
            SPKV T EKLEAG KKVYCRCWQSGTFPLCDG+H KHNEETGDNVGPLIVSVAK
Sbjct:   68 SPKVVTQEKLEAGDKKVYCRCWQSGTFPLCDGSHVKHNEETGDNVGPLIVSVAK 121
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BLAST of mRNA_P-wetherbeei_contig19246.1.1 vs. uniprot
Match: A0A7S2UEE3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEE3_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.070e-29
Identity = 48/54 (88.89%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 SPKVATMEKLEAGGKKVYCRCWQSGTFPLCDGTHAKHNEETGDNVGPLIVSVAK 162
            SPKVATMEKLE G KKVYCRCWQSGTFPLCDG+H KHNE TGDNVGPLIVSV K
Sbjct:   44 SPKVATMEKLEPGTKKVYCRCWQSGTFPLCDGSHMKHNEATGDNVGPLIVSVPK 97
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BLAST of mRNA_P-wetherbeei_contig19246.1.1 vs. uniprot
Match: A0A835ZBW8_9STRA (CDGSH iron sulfur domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBW8_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.820e-27
Identity = 45/54 (83.33%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 SPKVATMEKLEAGGKKVYCRCWQSGTFPLCDGTHAKHNEETGDNVGPLIVSVAK 162
            SPKVATME L AGGKKVYCRCW+S TFPLC+G H KHNEE GDNVGPLIVSV K
Sbjct:   43 SPKVATMETLPAGGKKVYCRCWKSATFPLCNGAHVKHNEEVGDNVGPLIVSVEK 96
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BLAST of mRNA_P-wetherbeei_contig19246.1.1 vs. uniprot
Match: A0A7S1GHV5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GHV5_CYCTE)

HSP 1 Score: 102 bits (254), Expect = 7.680e-27
Identity = 46/54 (85.19%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 SPKVATMEKLEAGGKKVYCRCWQSGTFPLCDGTHAKHNEETGDNVGPLIVSVAK 162
            S KV TME L   GKKVYCRCWQSGTFPLCDGTHAKHNE TGDNVGPLIVSV K
Sbjct:   66 SAKVVTMETLAEPGKKVYCRCWQSGTFPLCDGTHAKHNEATGDNVGPLIVSVPK 119
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BLAST of mRNA_P-wetherbeei_contig19246.1.1 vs. uniprot
Match: A0A812JQ04_9DINO (Cisd1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812JQ04_9DINO)

HSP 1 Score: 102 bits (253), Expect = 1.150e-26
Identity = 45/53 (84.91%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    4 PKVATMEKLEAGGKKVYCRCWQSGTFPLCDGTHAKHNEETGDNVGPLIVSVAK 162
            PKV T E L+AG KKVYCRCW SGTFPLCDGTHAKHNE TGDNVGPLIVSV K
Sbjct:   70 PKVVTKEDLKAGDKKVYCRCWLSGTFPLCDGTHAKHNEATGDNVGPLIVSVKK 122
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BLAST of mRNA_P-wetherbeei_contig19246.1.1 vs. uniprot
Match: A0A8J9SAA9_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SAA9_PHATR)

HSP 1 Score: 99.8 bits (247), Expect = 1.550e-26
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 SPKVATMEKLEAGGKKVYCRCWQSGTFPLCDGTHAKHNEETGDNVGPLIVSVAKE 165
            SPKVATM+ +E G KKVYCRCW SGTFPLCDGTH KHN+ TGDNVGPLIVSV KE
Sbjct:    6 SPKVATMDDIEKG-KKVYCRCWLSGTFPLCDGTHQKHNDATGDNVGPLIVSVKKE 59
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BLAST of mRNA_P-wetherbeei_contig19246.1.1 vs. uniprot
Match: D8LP22_ECTSI (CDGSH iron sulfur domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP22_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.770e-26
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    4 PKVATMEKLEAGGKKVYCRCWQSGTFPLCDGTHAKHNEETGDNVGPLIVSVAKE 165
            PKV TM+ ++AGGKKVYCRCW+SGTFPLCDG H KHNE TGDNVGPLIVS  K+
Sbjct:   48 PKVVTMDSVDAGGKKVYCRCWKSGTFPLCDGAHVKHNEATGDNVGPLIVSGPKK 101
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BLAST of mRNA_P-wetherbeei_contig19246.1.1 vs. uniprot
Match: A0A7S3JTK3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JTK3_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.800e-26
Identity = 45/54 (83.33%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 SPKVATMEKLEAGGKKVYCRCWQSGTFPLCDGTHAKHNEETGDNVGPLIVSVAK 162
            S KV TM++LEAG KKVYCRCW SGTFPLCDGTHAKHNE TGDNVGPLIVS  K
Sbjct:   61 SAKVVTMDELEAGKKKVYCRCWLSGTFPLCDGTHAKHNEATGDNVGPLIVSSPK 114
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BLAST of mRNA_P-wetherbeei_contig19246.1.1 vs. uniprot
Match: A0A6U3VYZ3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VYZ3_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.470e-26
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 SPKVATMEKLEAGGKKVYCRCWQSGTFPLCDGTHAKHNEETGDNVGPLIVSVAKE 165
            S KV   EKL AG KKVYCRCWQSGTFPLCD +H KHNE TGDNVGPLIV+VAKE
Sbjct:   46 SAKVVNQEKLGAGDKKVYCRCWQSGTFPLCDASHVKHNEATGDNVGPLIVAVAKE 100
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BLAST of mRNA_P-wetherbeei_contig19246.1.1 vs. uniprot
Match: A0A7R9W3H1_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W3H1_9STRA)

HSP 1 Score: 100 bits (248), Expect = 7.420e-26
Identity = 44/54 (81.48%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 SPKVATMEKLEAGGKKVYCRCWQSGTFPLCDGTHAKHNEETGDNVGPLIVSVAK 162
            SPKV   EKLE G K VYCRCW SGTFPLCDGTHAKHN+ TGDNVGPLIVS AK
Sbjct:   73 SPKVVNQEKLEPGKKGVYCRCWLSGTFPLCDGTHAKHNDATGDNVGPLIVSAAK 126
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19246.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2I006_9STRA1.760e-3090.74Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2UEE3_9STRA2.070e-2988.89Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A835ZBW8_9STRA1.820e-2783.33CDGSH iron sulfur domain-containing protein n=1 Ta... [more]
A0A7S1GHV5_CYCTE7.680e-2785.19Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A812JQ04_9DINO1.150e-2684.91Cisd1 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A8J9SAA9_PHATR1.550e-2681.82Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
D8LP22_ECTSI1.770e-2677.78CDGSH iron sulfur domain-containing protein n=1 Ta... [more]
A0A7S3JTK3_9STRA1.800e-2683.33Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A6U3VYZ3_9STRA3.470e-2680.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7R9W3H1_9STRA7.420e-2681.48Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19246contigP-wetherbeei_contig19246:551..863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LP22
PFAMsMitoNEET_N,zf-CDGSH
Model size168
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000422,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005789,GO:0006914,GO:0006996,GO:0007005,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0009056,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009894,GO:0009987,GO:0010150,GO:0010259,GO:0010506,GO:0012505,GO:0016020,GO:0016043,GO:0019222,GO:0019867,GO:0022411,GO:0031090,GO:0031323,GO:0031329,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031984,GO:0032501,GO:0032502,GO:0042175,GO:0042592,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0048037,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0051536,GO:0051537,GO:0051540,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0061726,GO:0061919,GO:0065007,GO:0065008,GO:0071840,GO:0072593,GO:0090693,GO:0098588,GO:0098771,GO:0098805,GO:0098827,GO:0099402,GO:1903008
Exons2
Evalue2.49e-24
EggNOG OGsKOG3461@1|root,KOG3461@2759|Eukaryota
Description2 iron, 2 sulfur cluster binding
Cds size150
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186167.8116503-CDS-P-wetherbeei_contig19246:550..6491683186167.8116503-CDS-P-wetherbeei_contig19246:550..649Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19246 551..649 -
1683186167.8201923-CDS-P-wetherbeei_contig19246:794..8451683186167.8201923-CDS-P-wetherbeei_contig19246:794..845Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19246 795..845 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186167.827462-UTR-P-wetherbeei_contig19246:845..8631683186167.827462-UTR-P-wetherbeei_contig19246:845..863Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19246 846..863 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19246.1.1prot_P-wetherbeei_contig19246.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19246 551..845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19246.1.1

>prot_P-wetherbeei_contig19246.1.1 ID=prot_P-wetherbeei_contig19246.1.1|Name=mRNA_P-wetherbeei_contig19246.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=50bp
MEKLEAGGKKVYCRCWQSGTFPLCDGTHAKHNEETGDNVGPLIVSVAKE*
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mRNA from alignment at P-wetherbeei_contig19246:551..863-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19246.1.1 ID=mRNA_P-wetherbeei_contig19246.1.1|Name=mRNA_P-wetherbeei_contig19246.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=313bp|location=Sequence derived from alignment at P-wetherbeei_contig19246:551..863- (Phaeothamnion wetherbeei SAG_119_79)
AGCCCCAAGGTTGCCACGATGGAGAAGCTGGAGGCCGGAGGCAAGAAGGT
CTACTGCCGCTGTTGGCAGGTGAGCAACTGCGGGCACGGCGGGACCCTGG
GAGGACATATATGGGGCACTTTTGCCTGCGTTGGTGCATGTGGTGCCCGG
CTTCGGGAACCTGCTTGACTCCCTTGCTCCGTCTTCTCTCCCTTTGTGCG
TGTACCACATGCAGTCGGGGACTTTCCCCCTGTGCGACGGCACCCACGCG
AAGCACAACGAGGAGACCGGCGACAACGTTGGCCCTCTTATCGTCAGCGT
TGCGAAGGAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19246:551..863-

>mRNA_P-wetherbeei_contig19246.1.1 ID=mRNA_P-wetherbeei_contig19246.1.1|Name=mRNA_P-wetherbeei_contig19246.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=150bp|location=Sequence derived from alignment at P-wetherbeei_contig19246:551..863- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGAAGCTGGAGGCCGGAGGCAAGAAGGTCTACTGCCGCTGTTGGCA
GTCGGGGACTTTCCCCCTGTGCGACGGCACCCACGCGAAGCACAACGAGG
AGACCGGCGACAACGTTGGCCCTCTTATCGTCAGCGTTGCGAAGGAGTAA
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