mRNA_P-wetherbeei_contig19245.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19245.1.1
Unique NamemRNA_P-wetherbeei_contig19245.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19245.1.1 vs. uniprot
Match: A0A2V0P6H4_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P6H4_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 9.630e-7
Identity = 40/116 (34.48%), Postives = 53/116 (45.69%), Query Frame = 1 
Query:   64 VTTLWVTAC--AQNRRRTSPAACWPLFAPLPALPRPFPEARRPRVCLSLYPPTIRTAMTALVESMGGRCSCRLVRGETTHLVAPRPEGPKVADARQWGSVRIVSERWLLHVARNGY 405
            VT  W+ AC  AQ +  T P    P    +              VC + +    R  + A V + GG  S  L +G  THLV  RPEGPK A A++WG+VRI +  WL      G+
Sbjct:   90 VTREWLDACVEAQAQLPTDPYRAGPFTGLV--------------VCGTNFTLQQRQEVEAAVVAGGGAFSPELHKGVCTHLVCLRPEGPKYAAAKKWGTVRITTAEWLRRSVLQGF 191
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19245.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V0P6H4_9CHLO9.630e-734.48Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19245contigP-wetherbeei_contig19245:80..629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps3751
PFAMsBRCT,PTCB-BRCT
Model size550
Max annot lvl2759|Eukaryota
KEGG koko:K10728,ko:K14972
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.32e-09
EggNOG OGsKOG2043@1|root,KOG2043@2759|Eukaryota
DescriptionFHA domain binding
Cds size549
COG categoryDO
BRITEko00000,ko00001,ko03032,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186167.7827494-CDS-P-wetherbeei_contig19245:80..6291683186167.7827494-CDS-P-wetherbeei_contig19245:80..629Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19245 81..629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19245.1.1prot_P-wetherbeei_contig19245.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19245 81..629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19245.1.1

>prot_P-wetherbeei_contig19245.1.1 ID=prot_P-wetherbeei_contig19245.1.1|Name=mRNA_P-wetherbeei_contig19245.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=183bp
LAADAAALLESPEAAGGPSAAVTTLWVTACAQNRRRTSPAACWPLFAPLP
ALPRPFPEARRPRVCLSLYPPTIRTAMTALVESMGGRCSCRLVRGETTHL
VAPRPEGPKVADARQWGSVRIVSERWLLHVARNGYEDGCEAAFALADEPT
GGAPAAAIASASCTTASDAIAAGSGGGDGGSGG
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mRNA from alignment at P-wetherbeei_contig19245:80..629-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19245.1.1 ID=mRNA_P-wetherbeei_contig19245.1.1|Name=mRNA_P-wetherbeei_contig19245.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=550bp|location=Sequence derived from alignment at P-wetherbeei_contig19245:80..629- (Phaeothamnion wetherbeei SAG_119_79)
CTCGCCGCTGACGCCGCGGCGCTGCTGGAGTCCCCCGAGGCGGCGGGTGG
TCCGTCGGCGGCCGTCACAACGCTGTGGGTGACGGCCTGCGCTCAGAACC
GCCGCCGGACGTCGCCGGCCGCCTGCTGGCCGCTCTTTGCACCATTGCCG
GCACTGCCGCGGCCCTTCCCGGAGGCGCGCCGCCCCCGCGTCTGCCTGTC
GCTCTACCCGCCCACCATCCGCACCGCGATGACGGCGCTGGTGGAGAGCA
TGGGTGGCCGCTGCTCGTGTCGGCTGGTGCGTGGGGAGACGACACACCTG
GTGGCGCCGCGGCCAGAAGGTCCGAAAGTGGCGGATGCGCGGCAGTGGGG
CAGCGTCCGCATCGTGTCCGAGCGGTGGCTGCTCCACGTGGCGCGGAACG
GGTACGAAGACGGCTGCGAGGCGGCGTTTGCGCTCGCCGACGAGCCAACC
GGAGGAGCTCCTGCCGCCGCCATTGCCAGCGCCAGCTGTACCACTGCCAG
TGATGCCATTGCTGCTGGCAGCGGCGGCGGCGATGGGGGCAGCGGCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19245:80..629-

>mRNA_P-wetherbeei_contig19245.1.1 ID=mRNA_P-wetherbeei_contig19245.1.1|Name=mRNA_P-wetherbeei_contig19245.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig19245:80..629- (Phaeothamnion wetherbeei SAG_119_79)
CTCGCCGCTGACGCCGCGGCGCTGCTGGAGTCCCCCGAGGCGGCGGGTGG
TCCGTCGGCGGCCGTCACAACGCTGTGGGTGACGGCCTGCGCTCAGAACC
GCCGCCGGACGTCGCCGGCCGCCTGCTGGCCGCTCTTTGCACCATTGCCG
GCACTGCCGCGGCCCTTCCCGGAGGCGCGCCGCCCCCGCGTCTGCCTGTC
GCTCTACCCGCCCACCATCCGCACCGCGATGACGGCGCTGGTGGAGAGCA
TGGGTGGCCGCTGCTCGTGTCGGCTGGTGCGTGGGGAGACGACACACCTG
GTGGCGCCGCGGCCAGAAGGTCCGAAAGTGGCGGATGCGCGGCAGTGGGG
CAGCGTCCGCATCGTGTCCGAGCGGTGGCTGCTCCACGTGGCGCGGAACG
GGTACGAAGACGGCTGCGAGGCGGCGTTTGCGCTCGCCGACGAGCCAACC
GGAGGAGCTCCTGCCGCCGCCATTGCCAGCGCCAGCTGTACCACTGCCAG
TGATGCCATTGCTGCTGGCAGCGGCGGCGGCGATGGGGGCAGCGGCGGC
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