mRNA_P-wetherbeei_contig1923.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1923.3.1
Unique NamemRNA_P-wetherbeei_contig1923.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1923.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1923contigP-wetherbeei_contig1923:3865..6388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FGV6
PFAMsNucleotid_trans
Model size1793
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue2.87e-10
EggNOG OGs2C6NG@1|root,2SGR5@2759|Eukaryota
DescriptionNucleotide-diphospho-sugar transferase
Cds size675
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1923.3.1prot_P-wetherbeei_contig1923.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1923 4610..5679 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186167.1897962-UTR-P-wetherbeei_contig1923:3864..40471683186167.1897962-UTR-P-wetherbeei_contig1923:3864..4047Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1923 3865..4047 +
1683186167.201701-UTR-P-wetherbeei_contig1923:4208..42971683186167.201701-UTR-P-wetherbeei_contig1923:4208..4297Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1923 4209..4297 +
1683186167.2116413-UTR-P-wetherbeei_contig1923:4447..45691683186167.2116413-UTR-P-wetherbeei_contig1923:4447..4569Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1923 4448..4569 +
1683186167.221783-UTR-P-wetherbeei_contig1923:4594..46091683186167.221783-UTR-P-wetherbeei_contig1923:4594..4609Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1923 4595..4609 +
1683186167.2496254-UTR-P-wetherbeei_contig1923:5679..63881683186167.2496254-UTR-P-wetherbeei_contig1923:5679..6388Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1923 5680..6388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186167.2315328-CDS-P-wetherbeei_contig1923:4609..48971683186167.2315328-CDS-P-wetherbeei_contig1923:4609..4897Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1923 4610..4897 +
1683186167.2405798-CDS-P-wetherbeei_contig1923:5292..56791683186167.2405798-CDS-P-wetherbeei_contig1923:5292..5679Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1923 5293..5679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1923.3.1

>prot_P-wetherbeei_contig1923.3.1 ID=prot_P-wetherbeei_contig1923.3.1|Name=mRNA_P-wetherbeei_contig1923.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=225bp
MIVSAGYNALFLDADAVLVRPPAAVMVAAAAGAADLVASTGSFPPKLTAA
WGAAVCTGFFFVRAAAPASLDLLDRALRETVHVFDDQIGMNVALLEVGVR
WERGNISFPNGAPLCRGVASLPAGDLRVAMLNPGHYVRHCDKYPREDATL
LHCRSHKDAASKHDAMRAQGIWLLREGWEGDEYCEAAGGDWERFLDLVSD
ADTAAGAAASGDAAAGRRPKEAPA*
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mRNA from alignment at P-wetherbeei_contig1923:3865..6388+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1923.3.1 ID=mRNA_P-wetherbeei_contig1923.3.1|Name=mRNA_P-wetherbeei_contig1923.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2524bp|location=Sequence derived from alignment at P-wetherbeei_contig1923:3865..6388+ (Phaeothamnion wetherbeei SAG_119_79)
TAAGAGGTACTGGTCCCACCAGTGGAGTAATGTGGCGGCAATTGCTCGCC
CCGTTCACGGTGTTACTGCTGACCCTGGGCTGGTCGGAAGCCAATTTGGG
GGACGCCAATGATCCGCAAACGCAAATCCTCGTTTCTCGAGCGAAGGCCA
ACAACGAAAACACCGTCTACTACCTCGTTACAGGTACAACCGCATCAGCA
CCACGCATCTCCTAAAGCATCTAACAGAACTGTGCAAACCGCGCTCGCTG
ATCCCCTTCCTGCTGCGAGTCCTTCCTCTTTCTTTCCTTGACCCAACGTA
TTTTGCCTTCTGGCTGCCATTTTCGCACCGTGCTGGCACCGCAGATCGCA
ATTACGTCGATGTAGTAATCAACAACATCTTAAACCTGCGCCGAATGGGC
GTCCAGAGCTACGCCGTGGGCTGCGCGGATGAGGTGAGAGAGCTTCGAAC
GGAACTGCGAACCTTTACTTCTCCGAATCCTTTTTCCCGCCATCTTTTTT
CTGCTCATCGCGAAGGCCCGCCAATTCGACCCTTGAATCCCTTCTTTTTA
CATTCACTCTCCTTTTTCACTTTGTTTTGTCAGGACGCCGCTGCTGTCCT
CGCGGCCCGCGGCTTCGCCTGCGCCCTCCTCGGCCCCGAATACTTCGAGT
TCCTCGGCCGCCTCCGCGTGGAGGACCTTTCCGAGCGCGCCGCCTGGCGC
GCCGAGTTCATAAAGGTCGTCCGCCTCAAGTTTCTCGGCCTCTCGATGAT
TGTCAGTGCCGGCTACAACGCCCTCTTTCTCGACGCCGACGCCGTCTTAG
TGCGCCCGCCGGCGGCCGTCATGGTGGCGGCGGCGGCGGGCGCGGCGGAT
CTGGTGGCTAGCACGGGCTCGTTCCCGCCGAAGCTGACGGCGGCGTGGGG
CGCGGCGGTCTGCACGGGTTTCTTCTTCGTGAGGGCGGCGGCGCCGGCGT
CGCTGGATCTGCTGGACCGCGCGCTGCGGGAGACGGTGCACGTGTTCGAC
GACCAGATCGGCATGAACGTCGCGCTGCTCGAGGTGAATAATTGTATCGG
CGGAATGCTTCTAGAATTTTCTGGGGTTGTCTTCTCGTTCCGTGATGCCA
TCTGTGACCATTTAGTTCTAGCTATGCAGTTCGAGAAGGAAAAAATTGGC
TTCGCTTGGAGCCTTAAGCTGATTAAGAGACGGGCGAAATCCTGATGATG
CTTCTAGTGCAAGTCTGAAAGGCTGGTCATACATCAGGTTTGAATGCCAC
CCTTTGCTATCAACAACAGTTGTGCACGTGTCTTCAGGACGTGTCATCGC
TGTCGCTCCTTGACACTCTTCTCCTTCTCCGGCGCCGCCGGCCGGTGCCG
ACTTTTTCCATCTTCTTTGACTTACGCTCGCGTGTTTTTCTTTCCGTGGC
ACTGTTCCGTCCGTCCCAACCGCACCAGGTCGGGGTCCGCTGGGAGCGCG
GCAACATCTCCTTCCCGAACGGCGCCCCACTCTGCCGCGGCGTCGCGTCC
CTCCCTGCCGGCGACCTCCGCGTGGCGATGCTCAACCCGGGCCATTATGT
GCGCCACTGCGACAAGTACCCGCGGGAGGACGCGACGCTGCTGCACTGCC
GCAGCCACAAAGATGCGGCGTCGAAGCACGACGCGATGCGAGCCCAGGGA
ATCTGGCTCCTGCGAGAGGGCTGGGAAGGGGATGAGTACTGCGAGGCAGC
CGGCGGCGACTGGGAGAGATTTCTGGACCTGGTCAGCGACGCCGACACCG
CAGCCGGCGCTGCCGCTAGTGGTGATGCCGCTGCCGGTCGAAGACCGAAG
GAAGCGCCTGCCTGATAAAGTTAAACGGTTGGAGTGCGTATGGCAGCATA
CGAAGTTGCGATTGGTAGCCGCTAAGGCTCCGACGTACGTCGGACGGAGC
GGCGGCAGCGCGTGGCGGCGGCAGCAGCCGCCGCTGCTGCCGGACCCACT
GCCGCCACCTCAGCCACTGCTGCCGGTGCTGCCGCTCCTTCCTGCCACCG
TCGGCGAGTTTACAAGGACGGCCGTTCCTTCCATCACCCGCATCATCACC
CGTCACGCCGATTCGTTACGGCTCAGCTGGTTCTGATGGCAGCCGACGGC
GTCACGGCTGTGGCGGCAGCCGCCACGGGTGCAGCAGCAAACCGTCGCGC
TGATGCCGCTGCTATCAGCCGAGACGGGACAGCCAGGACGGTGCTGGCAA
CGTGACATGGGGCTGCCAGTTGTCCCGACTTGCACTAGCGCATGGCGGCA
CGGCAACGGCCGCTGTGGTCACGAGATTGGACAGCTATCAAATTGATGGG
CAGCGGTTGGCATAGAAATGGCCTGCTACCGCATCTGCGAAGGCTTCTGC
GGCAACCATTGTCAGTATCACGCACCATTTCTCTCGAAGGAAAGACGGTG
GCGTTGTGCCGTCGTTCGTTCTGTTGTGGCGGCGTTACTCGATCATTGTC
AGGAGAGTGTTTGCGTCAAGCGAAATTTGGCTTAGACGTGACGGACGCCG
AGGGCGGACAAGGCCCGGTAGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1923:3865..6388+

>mRNA_P-wetherbeei_contig1923.3.1 ID=mRNA_P-wetherbeei_contig1923.3.1|Name=mRNA_P-wetherbeei_contig1923.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=675bp|location=Sequence derived from alignment at P-wetherbeei_contig1923:3865..6388+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATTGTCAGTGCCGGCTACAACGCCCTCTTTCTCGACGCCGACGCCGT
CTTAGTGCGCCCGCCGGCGGCCGTCATGGTGGCGGCGGCGGCGGGCGCGG
CGGATCTGGTGGCTAGCACGGGCTCGTTCCCGCCGAAGCTGACGGCGGCG
TGGGGCGCGGCGGTCTGCACGGGTTTCTTCTTCGTGAGGGCGGCGGCGCC
GGCGTCGCTGGATCTGCTGGACCGCGCGCTGCGGGAGACGGTGCACGTGT
TCGACGACCAGATCGGCATGAACGTCGCGCTGCTCGAGGTCGGGGTCCGC
TGGGAGCGCGGCAACATCTCCTTCCCGAACGGCGCCCCACTCTGCCGCGG
CGTCGCGTCCCTCCCTGCCGGCGACCTCCGCGTGGCGATGCTCAACCCGG
GCCATTATGTGCGCCACTGCGACAAGTACCCGCGGGAGGACGCGACGCTG
CTGCACTGCCGCAGCCACAAAGATGCGGCGTCGAAGCACGACGCGATGCG
AGCCCAGGGAATCTGGCTCCTGCGAGAGGGCTGGGAAGGGGATGAGTACT
GCGAGGCAGCCGGCGGCGACTGGGAGAGATTTCTGGACCTGGTCAGCGAC
GCCGACACCGCAGCCGGCGCTGCCGCTAGTGGTGATGCCGCTGCCGGTCG
AAGACCGAAGGAAGCGCCTGCCTGA
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