mRNA_P-wetherbeei_contig19223.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19223.1.1
Unique NamemRNA_P-wetherbeei_contig19223.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19223.1.1 vs. uniprot
Match: UPI001E44CD66 (transposase n=1 Tax=Tepidimonas taiwanensis TaxID=307486 RepID=UPI001E44CD66)

HSP 1 Score: 246 bits (627), Expect = 8.630e-77
Identity = 118/157 (75.16%), Postives = 131/157 (83.44%), Query Frame = 1 
Query:    1 LYCDRADAENVFDELKNQWELGGFITQDINRWQTVARVCALVYNWWGWYCRASHPEGRMEAITSRPLL-AAVGKAVTHANQITLYLTPLHGRAIVLEQLIVNIGAAFQHFKAAAEQFKDMDRWAWLLRYICERIASGIGPPKPAQGLPTMGQLPDLG 468
            LY DRADAEN FDELKNQW LGGF TQD+ R QTVAR CALVYNWW WYCRA+HP GR+EAITSRPLL AAVGKA +HANQ TLYLTPLHGRA VL++LI NIGAA +H +AAAEQFKD+DRW+ LLR I +RIA  IGPP+P  GLP  G LP+LG
Sbjct:  352 LYRDRADAENAFDELKNQWGLGGFTTQDLRRCQTVARSCALVYNWWSWYCRAAHPTGRLEAITSRPLLLAAVGKAASHANQTTLYLTPLHGRADVLKRLIANIGAALRHVRAAAEQFKDLDRWSCLLRDISDRIAPVIGPPRPPTGLPAAGLLPNLG 508
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BLAST of mRNA_P-wetherbeei_contig19223.1.1 vs. uniprot
Match: UPI001F532E48 (transposase n=2 Tax=Calidifontimicrobium TaxID=2828371 RepID=UPI001F532E48)

HSP 1 Score: 243 bits (621), Expect = 8.100e-76
Identity = 114/151 (75.50%), Postives = 126/151 (83.44%), Query Frame = 1 
Query:    1 LYCDRADAENVFDELKNQWELGGFITQDINRWQTVARVCALVYNWWGWYCRASHPEGRMEAITSRPLL-AAVGKAVTHANQITLYLTPLHGRAIVLEQLIVNIGAAFQHFKAAAEQFKDMDRWAWLLRYICERIASGIGPPKPAQGLPTMG 450
            LY DRADAEN FDELKNQW LGGF TQDINR QTVAR CALVYNWW WYCRA+HP GR+EAITSRPLL AAVGKA  HANQ TLYLTPLHGR  +L++LI NIGAA QH ++AAEQFKD+DRW  LLRY+ +RIA  +GPP+PA GLP  G
Sbjct:  365 LYRDRADAENAFDELKNQWGLGGFTTQDINRCQTVARACALVYNWWSWYCRAAHPTGRLEAITSRPLLLAAVGKAANHANQTTLYLTPLHGRTDMLKRLIANIGAALQHVRSAAEQFKDLDRWGCLLRYVSDRIAPIVGPPRPAAGLPATG 515
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BLAST of mRNA_P-wetherbeei_contig19223.1.1 vs. uniprot
Match: UPI00114378D5 (transposase n=1 Tax=Ideonella azotifigens TaxID=513160 RepID=UPI00114378D5)

HSP 1 Score: 237 bits (604), Expect = 3.170e-73
Identity = 114/151 (75.50%), Postives = 124/151 (82.12%), Query Frame = 1 
Query:    1 LYCDRADAENVFDELKNQWELGGFITQDINRWQTVARVCALVYNWWGWYCRASHPEGRMEAITSRPLL-AAVGKAVTHANQITLYLTPLHGRAIVLEQLIVNIGAAFQHFKAAAEQFKDMDRWAWLLRYICERIASGIGPPKPAQGLPTMG 450
            LY DRADAEN FDELKNQW LGGF TQDIN  QTVAR CALVYNWW WYCRA+HP GR+EAITSRPLL AAVG A +HANQ  LYLTPLHG+A +L++LI NIGAA QH KAAAEQFK +DRWA LLRYI +RIA  IGPP+PA  LP  G
Sbjct:  370 LYRDRADAENAFDELKNQWGLGGFTTQDINPCQTVARACALVYNWWSWYCRAAHPAGRLEAITSRPLLLAAVGTAASHANQTMLYLTPLHGKAELLKRLIANIGAALQHVKAAAEQFKGLDRWACLLRYISDRIAPVIGPPRPAPALPATG 520
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BLAST of mRNA_P-wetherbeei_contig19223.1.1 vs. uniprot
Match: A0A848FIZ4_9BURK (Transposase n=2 Tax=Azohydromonas caseinilytica TaxID=2728836 RepID=A0A848FIZ4_9BURK)

HSP 1 Score: 209 bits (532), Expect = 1.210e-62
Identity = 99/151 (65.56%), Postives = 112/151 (74.17%), Query Frame = 1 
Query:    1 LYCDRADAENVFDELKNQWELGGFITQDINRWQTVARVCALVYNWWGWYCRASHPEGRMEAITSRPLL-AAVGKAVTHANQITLYLTPLHGRAIVLEQLIVNIGAAFQHFKAAAEQFKDMDRWAWLLRYICERIASGIGPPKPAQGLPTMG 450
            LY DRAD EN FDELKNQW L GF TQD+NR QT AR CALVYNWW WYCRA+HP GR+EAITSRPLL AAVGKA +HA Q TLYLTPLHGRA  ++ LI N+GAA QH + AAEQF ++D W  +L YI +RIA  +       GLP  G
Sbjct:  356 LYRDRADCENGFDELKNQWGLSGFTTQDLNRCQTTARACALVYNWWSWYCRAAHPGGRLEAITSRPLLLAAVGKAASHAGQTTLYLTPLHGRAATIKALIANVGAALQHVRRAAEQFSNLDPWGAMLHYISDRIAPSLRASPVPPGLPATG 506
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BLAST of mRNA_P-wetherbeei_contig19223.1.1 vs. uniprot
Match: A2SNS1_METPP (Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain ATCC BAA-1232 / LMG 22953 / PM1) TaxID=420662 RepID=A2SNS1_METPP)

HSP 1 Score: 197 bits (501), Expect = 4.940e-62
Identity = 94/123 (76.42%), Postives = 103/123 (83.74%), Query Frame = 1 
Query:    1 LYCDRADAENVFDELKNQWELGGFITQDINRWQTVARVCALVYNWWGWYCRASHPEGRMEAITSRPLL-AAVGKAVTHANQITLYLTPLHGRAIVLEQLIVNIGAAFQHFKAAAEQFKDMDRW 366
            +Y DRADA N FDELKNQW LGGF TQDINR QTVAR CALVY WW WYCRA+HP GR+EAITSRPLL AAVGKA +HANQ TLYLTPLHGR+ VL++LI NIG A QH KAAAEQ K++ RW
Sbjct:   36 IYRDRADAGNAFDELKNQWGLGGFTTQDINRCQTVARACALVYKWWSWYCRAAHPTGRLEAITSRPLLLAAVGKAASHANQTTLYLTPLHGRSQVLKRLITNIGMALQHVKAAAEQLKNLARW 158
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BLAST of mRNA_P-wetherbeei_contig19223.1.1 vs. uniprot
Match: UPI0019C8D26F (Transposase n=1 Tax=Bacteriovorax sp. TaxID=2608087 RepID=UPI0019C8D26F)

HSP 1 Score: 199 bits (506), Expect = 1.890e-60
Identity = 100/151 (66.23%), Postives = 112/151 (74.17%), Query Frame = 1 
Query:    1 LYCDRADAENVFDELKNQWELGGFITQDINRWQTVARVCALVYNWWGWYCRASHPEGRMEAITSRPLL-AAVGKAVTHANQITLYLTPLHGRAIVLEQLIVNIGAAFQHFKAAAEQFKDMDRWAWLLRYICERIASGIGPPKPAQGLPTMG 450
            LY DRAD EN FDELKNQW L GF T DINR QT AR CALVYN W WYCRA++P+ RMEAITSRPLL AAVG+A     Q TLYLTPLHG+A +L+ LI NI AA QH KAAAEQFK +DRWA LLRY+ +RIA  + P +P   L   G
Sbjct:  197 LYRDRADCENGFDELKNQWGLSGFTTHDINRCQTTARACALVYNGWSWYCRAANPKARMEAITSRPLLLAAVGRATHSGGQTTLYLTPLHGKANLLKGLIANIHAALQHVKAAAEQFKAVDRWATLLRYVSDRIAPTLPPFRPPPWLQATG 347
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BLAST of mRNA_P-wetherbeei_contig19223.1.1 vs. uniprot
Match: A0A2R4XFV6_9BURK (DDE_Tnp_1 domain-containing protein n=3 Tax=Orrella marina TaxID=2163011 RepID=A0A2R4XFV6_9BURK)

HSP 1 Score: 197 bits (500), Expect = 3.430e-60
Identity = 91/151 (60.26%), Postives = 110/151 (72.85%), Query Frame = 1 
Query:    1 LYCDRADAENVFDELKNQWELGGFITQDINRWQTVARVCALVYNWWGWYCRASHPEGRMEAITSRPLL-AAVGKAVTHANQITLYLTPLHGRAIVLEQLIVNIGAAFQHFKAAAEQFKDMDRWAWLLRYICERIASGIGPPKPAQGLPTMG 450
            LY DR D EN FDELKNQW L GF T+D+NR QT AR  AL+YNWW WYCRA+HP GR+EAITSRPLL AAVGKA +HA Q TLYLT +H R   + QL++N+ AA +H ++ AEQFKD+DRW  LL+Y+C+RIA  +        LP  G
Sbjct:  144 LYRDRCDCENGFDELKNQWGLSGFTTRDLNRSQTTARAGALIYNWWSWYCRAAHPGGRLEAITSRPLLLAAVGKAASHAGQTTLYLTSMHARTDTINQLLINVRAALRHVRSTAEQFKDVDRWGTLLKYVCQRIAPRMDDHPACLTLPATG 294
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BLAST of mRNA_P-wetherbeei_contig19223.1.1 vs. uniprot
Match: A0A2R4XL81_9BURK (Transposase n=2 Tax=Orrella marina TaxID=2163011 RepID=A0A2R4XL81_9BURK)

HSP 1 Score: 199 bits (507), Expect = 4.970e-60
Identity = 93/151 (61.59%), Postives = 111/151 (73.51%), Query Frame = 1 
Query:    1 LYCDRADAENVFDELKNQWELGGFITQDINRWQTVARVCALVYNWWGWYCRASHPEGRMEAITSRPLL-AAVGKAVTHANQITLYLTPLHGRAIVLEQLIVNIGAAFQHFKAAAEQFKDMDRWAWLLRYICERIASGIGPPKPAQGLPTMG 450
            LY DR D EN FDELKNQW L GF T+D+NR QT AR  AL+YNWW WYCRA+HP GR+EAITSRPLL AAVGKA +HA Q TLYLT +H R   + QL+VN+ AA QH +  AEQFKD+DRW+ LL+Y+C++IA  I      + LP  G
Sbjct:  247 LYRDRCDCENGFDELKNQWGLSGFTTRDLNRSQTTARAGALIYNWWSWYCRAAHPGGRLEAITSRPLLLAAVGKAASHAGQTTLYLTSMHARMDTINQLLVNVRAALQHVRLTAEQFKDVDRWSTLLKYVCQKIAPRIDAQPACRTLPATG 397
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BLAST of mRNA_P-wetherbeei_contig19223.1.1 vs. uniprot
Match: UPI00199B17D2 (Transposase n=1 Tax=Bacteriovorax sp. TaxID=2608087 RepID=UPI00199B17D2)

HSP 1 Score: 189 bits (480), Expect = 1.350e-56
Identity = 96/151 (63.58%), Postives = 108/151 (71.52%), Query Frame = 1 
Query:    1 LYCDRADAENVFDELKNQWELGGFITQDINRWQTVARVCALVYNWWGWYCRASHPEGRMEAITSRPLL-AAVGKAVTHANQITLYLTPLHGRAIVLEQLIVNIGAAFQHFKAAAEQFKDMDRWAWLLRYICERIASGIGPPKPAQGLPTMG 450
            LY DRAD EN FDELKNQW L GF T DINR QT AR CALVYN W WY RA++P  RMEAI+SRPLL AAVG+A     Q TLY  PLHG+A +L+ LI NI AA Q+ KAAAEQFK  DRWA L+RY+ +RI   +GP KP   LP  G
Sbjct:  192 LYRDRADCENGFDELKNQWGLSGFTTHDINRCQTTARACALVYNGWSWYGRAANPRARMEAISSRPLLLAAVGRATHSGGQTTLYPAPLHGKANLLKPLIANIHAALQYVKAAAEQFKTADRWAVLVRYVSDRIVPILGPFKPPPRLPATG 342
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BLAST of mRNA_P-wetherbeei_contig19223.1.1 vs. uniprot
Match: UPI000A018EEF (transposase n=1 Tax=Diaphorobacter sp. J5-51 TaxID=680496 RepID=UPI000A018EEF)

HSP 1 Score: 191 bits (484), Expect = 1.850e-55
Identity = 93/138 (67.39%), Postives = 103/138 (74.64%), Query Frame = 1 
Query:    1 LYCDRADAENVFDELKNQWELGGFITQDINRWQTVARVCALVYNWWGWYCRASHPEGRMEAITSRPLL-AAVGKAVTHANQITLYLTPLHGRAIVLEQLIVNIGAAFQHFKAAAEQFKDMDRWAWLLRYICERIASGI 411
            LY DRAD EN FDELKNQW L GF T+DINR QT AR CALVYNWW WYCRA++P  RMEAITSRPLL AAVG+A     Q TLYLTP+HG+A +L  LI NI AA QH +AAAEQFK  D W +LLRYI   IA  +
Sbjct:  365 LYRDRADCENGFDELKNQWGLSGFTTRDINRCQTTARACALVYNWWSWYCRAANPTARMEAITSRPLLLAAVGRAAHSGGQTTLYLTPMHGQANLLRPLIANIQAALQHVRAAAEQFKSADPWTFLLRYISNMIAPAL 502
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19223.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E44CD668.630e-7775.16transposase n=1 Tax=Tepidimonas taiwanensis TaxID=... [more]
UPI001F532E488.100e-7675.50transposase n=2 Tax=Calidifontimicrobium TaxID=282... [more]
UPI00114378D53.170e-7375.50transposase n=1 Tax=Ideonella azotifigens TaxID=51... [more]
A0A848FIZ4_9BURK1.210e-6265.56Transposase n=2 Tax=Azohydromonas caseinilytica Ta... [more]
A2SNS1_METPP4.940e-6276.42Uncharacterized protein n=1 Tax=Methylibium petrol... [more]
UPI0019C8D26F1.890e-6066.23Transposase n=1 Tax=Bacteriovorax sp. TaxID=260808... [more]
A0A2R4XFV6_9BURK3.430e-6060.26DDE_Tnp_1 domain-containing protein n=3 Tax=Orrell... [more]
A0A2R4XL81_9BURK4.970e-6061.59Transposase n=2 Tax=Orrella marina TaxID=2163011 R... [more]
UPI00199B17D21.350e-5663.58Transposase n=1 Tax=Bacteriovorax sp. TaxID=260808... [more]
UPI000A018EEF1.850e-5567.39transposase n=1 Tax=Diaphorobacter sp. J5-51 TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19223contigP-wetherbeei_contig19223:119..589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog420662.Mpe_B0435
PFAMsDDE_Tnp_1,DDE_Tnp_1_4
Model size471
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.09e-63
EggNOG OGsCOG3385@1|root,COG3385@2|Bacteria,1RA6A@1224|Proteobacteria,2VUMQ@28216|Betaproteobacteria,1KP6W@119065|unclassified Burkholderiales
DescriptionPFAM Transposase, IS4-like
Cds size471
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186167.0610013-CDS-P-wetherbeei_contig19223:118..5891683186167.0610013-CDS-P-wetherbeei_contig19223:118..589Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19223 119..589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19223.1.1prot_P-wetherbeei_contig19223.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19223 119..589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19223.1.1

>prot_P-wetherbeei_contig19223.1.1 ID=prot_P-wetherbeei_contig19223.1.1|Name=mRNA_P-wetherbeei_contig19223.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
LYCDRADAENVFDELKNQWELGGFITQDINRWQTVARVCALVYNWWGWYC
RASHPEGRMEAITSRPLLAAVGKAVTHANQITLYLTPLHGRAIVLEQLIV
NIGAAFQHFKAAAEQFKDMDRWAWLLRYICERIASGIGPPKPAQGLPTMG
QLPDLG*
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mRNA from alignment at P-wetherbeei_contig19223:119..589+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19223.1.1 ID=mRNA_P-wetherbeei_contig19223.1.1|Name=mRNA_P-wetherbeei_contig19223.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig19223:119..589+ (Phaeothamnion wetherbeei SAG_119_79)
CTCTACTGTGACAGGGCCGATGCGGAGAACGTCTTTGACGAGCTGAAGAA
CCAGTGGGAACTGGGCGGCTTCATCACGCAGGACATCAACCGCTGGCAGA
CCGTGGCCCGGGTGTGTGCGCTGGTCTACAACTGGTGGGGCTGGTACTGC
CGGGCCTCACACCCCGAGGGCCGCATGGAGGCCATCACCAGCCGCCCGCT
GCTGGCCGCTGTGGGCAAGGCCGTCACCCATGCCAACCAGATCACGCTGT
ACCTCACGCCGCTGCACGGCCGCGCCATCGTGCTCGAACAGCTGATTGTC
AATATCGGCGCAGCCTTTCAACATTTCAAGGCGGCTGCGGAGCAGTTCAA
GGACATGGATCGATGGGCTTGGCTGCTGCGCTATATCTGCGAGCGGATCG
CTTCGGGAATCGGGCCTCCGAAGCCTGCCCAAGGCTTGCCGACTATGGGG
CAACTGCCGGATTTGGGGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19223:119..589+

>mRNA_P-wetherbeei_contig19223.1.1 ID=mRNA_P-wetherbeei_contig19223.1.1|Name=mRNA_P-wetherbeei_contig19223.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig19223:119..589+ (Phaeothamnion wetherbeei SAG_119_79)
CTCTACTGTGACAGGGCCGATGCGGAGAACGTCTTTGACGAGCTGAAGAA
CCAGTGGGAACTGGGCGGCTTCATCACGCAGGACATCAACCGCTGGCAGA
CCGTGGCCCGGGTGTGTGCGCTGGTCTACAACTGGTGGGGCTGGTACTGC
CGGGCCTCACACCCCGAGGGCCGCATGGAGGCCATCACCAGCCGCCCGCT
GCTGGCCGCTGTGGGCAAGGCCGTCACCCATGCCAACCAGATCACGCTGT
ACCTCACGCCGCTGCACGGCCGCGCCATCGTGCTCGAACAGCTGATTGTC
AATATCGGCGCAGCCTTTCAACATTTCAAGGCGGCTGCGGAGCAGTTCAA
GGACATGGATCGATGGGCTTGGCTGCTGCGCTATATCTGCGAGCGGATCG
CTTCGGGAATCGGGCCTCCGAAGCCTGCCCAAGGCTTGCCGACTATGGGG
CAACTGCCGGATTTGGGGTAA
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