mRNA_P-wetherbeei_contig19201.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19201.1.1
Unique NamemRNA_P-wetherbeei_contig19201.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19201.1.1 vs. uniprot
Match: A0A3D5DCC8_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DCC8_9GAMM)

HSP 1 Score: 68.2 bits (165), Expect = 3.970e-12
Identity = 49/132 (37.12%), Postives = 67/132 (50.76%), Query Frame = 1 
Query:    1 MRLARVATALALLTTSAAAWACATDADCGAGGTCIKREKRASGVCYGGTRAAPAGETPMDEARGEEIIDVPLKPVSGERRENAKAWLGDPDQMIRDHLPGKEVGGTCMVTQDCSTGFDCVVAGFE-GHCVKL 393
            M+   +AT L++L     + AC +D +C  GG CIKREKRA+GVCYGG  +      PM     E  +   ++P+SG         +G  + +     P K     C+VTQDC  G DCV+ G   G CV L
Sbjct:    1 MKTVLLATILSVLLAPGPSIACDSDDECN-GGACIKREKRAAGVCYGGDLSQTT--IPMHTTTPEPGL---VEPISGHGINAPIPGVGLFNPLAN---PAKRPANACVVTQDCRGGMDCVITGSGWGTCVNL 123
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19201.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3D5DCC8_9GAMM3.970e-1237.12Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19201contigP-wetherbeei_contig19201:314..709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size396
Hectar predicted targeting categorysignal peptide
Exons1
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186166.5120587-CDS-P-wetherbeei_contig19201:313..7091683186166.5120587-CDS-P-wetherbeei_contig19201:313..709Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19201 314..709 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19201.1.1prot_P-wetherbeei_contig19201.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19201 314..709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19201.1.1

>prot_P-wetherbeei_contig19201.1.1 ID=prot_P-wetherbeei_contig19201.1.1|Name=mRNA_P-wetherbeei_contig19201.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
MRLARVATALALLTTSAAAWACATDADCGAGGTCIKREKRASGVCYGGTR
AAPAGETPMDEARGEEIIDVPLKPVSGERRENAKAWLGDPDQMIRDHLPG
KEVGGTCMVTQDCSTGFDCVVAGFEGHCVKL*
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mRNA from alignment at P-wetherbeei_contig19201:314..709-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19201.1.1 ID=mRNA_P-wetherbeei_contig19201.1.1|Name=mRNA_P-wetherbeei_contig19201.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig19201:314..709- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCCTCGCGCGCGTAGCGACGGCGCTTGCGCTGCTGACCACCAGCGC
GGCGGCATGGGCTTGTGCTACCGATGCCGATTGCGGTGCCGGCGGCACTT
GCATCAAACGCGAGAAGCGCGCGAGTGGCGTGTGTTACGGCGGCACGCGC
GCGGCACCTGCTGGCGAAACGCCCATGGATGAAGCGCGTGGCGAGGAAAT
TATCGATGTACCGCTCAAACCGGTCAGCGGTGAGCGGCGGGAAAACGCCA
AGGCCTGGCTCGGCGATCCCGATCAGATGATCAGGGACCATCTGCCGGGC
AAGGAGGTCGGCGGCACCTGCATGGTGACGCAGGATTGCTCGACAGGTTT
CGATTGTGTGGTGGCGGGCTTCGAAGGGCATTGCGTGAAGCTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19201:314..709-

>mRNA_P-wetherbeei_contig19201.1.1 ID=mRNA_P-wetherbeei_contig19201.1.1|Name=mRNA_P-wetherbeei_contig19201.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig19201:314..709- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCCTCGCGCGCGTAGCGACGGCGCTTGCGCTGCTGACCACCAGCGC
GGCGGCATGGGCTTGTGCTACCGATGCCGATTGCGGTGCCGGCGGCACTT
GCATCAAACGCGAGAAGCGCGCGAGTGGCGTGTGTTACGGCGGCACGCGC
GCGGCACCTGCTGGCGAAACGCCCATGGATGAAGCGCGTGGCGAGGAAAT
TATCGATGTACCGCTCAAACCGGTCAGCGGTGAGCGGCGGGAAAACGCCA
AGGCCTGGCTCGGCGATCCCGATCAGATGATCAGGGACCATCTGCCGGGC
AAGGAGGTCGGCGGCACCTGCATGGTGACGCAGGATTGCTCGACAGGTTT
CGATTGTGTGGTGGCGGGCTTCGAAGGGCATTGCGTGAAGCTCTGA
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