mRNA_P-wetherbeei_contig192.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig192.2.1
Unique NamemRNA_P-wetherbeei_contig192.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig192.2.1 vs. uniprot
Match: A0A6H5KBY9_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY9_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 2.220e-73
Identity = 155/370 (41.89%), Postives = 209/370 (56.49%), Query Frame = 2
Query:  260 KQTALSDLWQGQAEYRTNRRSLSSMSAEYYAQ--EQKWAALPPARVRCVMTATVVGFKHSVVDEPSEDRMAVHEAVTPVVDSALCEELGISATAVDESPFALFAVFDGHGGSTCADFLSKSVATVMAK*GESKWLFFCVLVFCSFSISSVPLSLNSSFRPLILCAVSPPQVFKPYQFTSPYVPPFSSSNRSDAVLIDEDMAPFLKRAVATTNTFATLEAVHCEWAQDSGDLSGSTAILGTYQDGILVMAGIGDSGGLFCDHTGDFQILCPRHTTDNPREVERVLSMGGKIIGNRVGGVLMPTRSLGDLDVKQQCGEGVVSPVPEMAFARVVAAP---APAPLPFLVLASDGLFDVMTYKAVADLARKSLK 1354
            +Q   SDLWQ +  ++TNR+ +  M  E+  +    + A    A +  + + T VG KH + + PSEDR+A+H+AV P +D    ++L I +  +D +PFA+F VFDGHGG  CA+FL++SV+TV+A                                                   SP             VL DED+ P  +R  AT ++F  LE VH  WA + GDLSGSTAIL T+QDG+LVMAG+GDS GL+ DH G    LCP+H+T N +EVERVLSMGG I+ NRV G LMPTR++GDLD K+  G  +VSP PE+  A + A P    P   PFLVLASDGL+DV+++  VA + RK L+
Sbjct:   98 RQQGSSDLWQNRGSFQTNRKRMQDMFREFSEELGSPENAGKNKAEIEDIFSYTSVGHKHIIRNAPSEDRIAIHQAVVPTIDDEDRKDLDIDS--IDTTPFAMFGVFDGHGGPACAEFLTQSVSTVLAH--------------------------------------------------SP-------------VLYDEDLTPTQRRTFATADSFEELEKVHNTWADEIGDLSGSTAILSTFQDGVLVMAGVGDSAGLYVDHMGKQHNLCPQHSTSNEKEVERVLSMGGTIVNNRVAGCLMPTRTIGDLDCKRALG-AIVSPHPEITLAAIYAPPDDGEPHDEPFLVLASDGLWDVLSFAEVASITRKGLR 401          
BLAST of mRNA_P-wetherbeei_contig192.2.1 vs. uniprot
Match: D8LEW5_ECTSI (GJ12915 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW5_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 3.220e-69
Identity = 144/327 (44.04%), Postives = 189/327 (57.80%), Query Frame = 2
Query:  383 ARVRCVMTATVVGFKHSVVDEPSEDRMAVHEAVTPVVDSALCEELGISATAVDESPFALFAVFDGHGGSTCADFLSKSVATVMAK*GESKWLFFCVLVFCSFSISSVPLSLNSSFRPLILCAVSPPQVFKPYQFTSPYVPPFSSSNRSDAVLIDEDMAPFLKRAVATTNTFATLEAVHCEWAQDSGDLSGSTAILGTYQDGILVMAGIGDSGGLFCDHTGDFQILCPRHTTDNPREVERVLSMGGKIIGNRVGGVLMPTRSLGDLDVKQQCGEGVVSPVPEMAFARVVAAP---APAPLPFLVLASDGLFDVMTYKAVADLARKSLK 1354
            A +  + + T VG KH V + PSEDR+A+H+AV P +D    ++L I +  +D +PFA+F VFDGHGG  CA+FL++SV+TV+A                                                   SP             VL DED+ P  +R  AT ++F  LE VH +WA + GDLSGSTAIL T+QDG+LVMAG+GDS GL+ DH G    LCP+H+T N +EVERVLSMGG I+ NRV G LMPTR++GDLD K+  G  +VSP PE+  A + A P    P   PFLVLASDGL+DV+++  VA + RK L+
Sbjct:   23 AEIEDIFSYTSVGHKHIVRNVPSEDRIAIHQAVVPTIDDKDRKDLDIDS--IDTTPFAMFGVFDGHGGPACAEFLTQSVSTVLAH--------------------------------------------------SP-------------VLYDEDLTPTQRRTFATADSFEELEKVHNKWADEIGDLSGSTAILSTFQDGVLVMAGVGDSAGLYVDHMGKQHNLCPQHSTSNEKEVERVLSMGGTIVNNRVAGCLMPTRTIGDLDCKRALG-AIVSPHPEITLAAIYAPPDDGEPHDEPFLVLASDGLWDVLSFAEVAFITRKGLR 283          
BLAST of mRNA_P-wetherbeei_contig192.2.1 vs. uniprot
Match: A0A836CMW2_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW2_9STRA)

HSP 1 Score: 109 bits (272), Expect = 6.310e-23
Identity = 92/320 (28.75%), Postives = 138/320 (43.12%), Query Frame = 2
Query:  536 VDESPFALFAVFDGHGGSTCADFLSKSVATVMAK*GESKWLFFCVLVFCSFSISSVPLSLNSSFRPLILCAVSPPQVFKPYQFTSPYVPPFSSSNRSDAVLIDEDMAPFLKRAVATTNTFATLEAVHCEWAQDSGDLSGSTAILGTYQDGILVMAGIGDSGGLFCDHTGDFQI-LCPRHTTDNPREVERVLSMGGKIIGNRVGGVLMPTRSLGDLDVKQQCG----------EGVVSPVPEMAFARVVAAPAPAPLPFLVLASDGLFDVMTYKAVADLARKSLKAKFSKWPARDTADELVRAALQLGSKDDVTVVVVVFE 1462
            ++    + FAVFDGHGGS C+ +L+ ++   +                C+ S     L+L    +  ++ A                                      LKRA          E  + + A    D SG+  ++G Y +G + +A +GD   +      D  + L   H +  P E  R+ + GG +I NR  GVL P+RS+GDLD+K+ C           E V+ P  + A       PA    PFL+ ASDGL+DV+    V DL +KSLK    K    + A +LVRAA++ G+ DD T +VV F+
Sbjct:    1 MESKQISCFAVFDGHGGSRCSQWLADNLEEDLR---------------CADSWRQEGLTLPKRLKGALVQA--------------------------------------LKRA----------EYKYLDLAFKESDHSGACVVVGLYCEGHVCVANVGDCLAVLYLPGADSHVDLSVAHRSRQPEEARRIEAAGGLVINNRAFGVLEPSRSIGDLDLKRHCRGAVTADPYIREVVIPPPQQPAEGAAKKKPALQEAPFLLFASDGLWDVVAAPVVVDLTKKSLKVWRKKPAKSNPARQLVRAAIRHGTMDDTTAIVVHFD 257          
BLAST of mRNA_P-wetherbeei_contig192.2.1 vs. uniprot
Match: A0A7S3XLZ6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLZ6_HETAK)

HSP 1 Score: 92.4 bits (228), Expect = 5.180e-17
Identity = 83/315 (26.35%), Postives = 129/315 (40.95%), Query Frame = 2
Query:  545 SPFALFAVFDGHGGSTCADFLSKSVATVMAK*GESKWLFFCVLVFCSFSISSVPLSLNSSFRPLILCAVSPPQVFKPYQFTSPYVPPFSSSNRSDAVLIDEDMAPFLKRAVATTNTFATLEAVHCEWAQDSGDLSGSTAILGTYQDGILVMAGIGDSGGLFCDHTGDFQILCPRHTTDNPREVERVLSMGGKIIGNRVGGVLMPTRSLGDLDVKQQCGEGVVSPVPEMAFARVVAAPAPAPLPFLVLASDGLFDVMTYKAVADLARKSLKAKFSKWPA----------RDTADELVRAALQLGSKDDVTVVVVVF 1459
            S  ++F+V DGHGG  CADFL  ++   +     +K         CS   +S+ L                                        AVL               +    +++A   ++A+   D SG+  ++       +  A +GD  G+  + TG  ++    H     +E++R+   G  +   R+GG+L+P+RS+GDLDV+      VV+          V   +    PFL+LASDG++D M   A A   +++LK K     A           D A  LV AA +LGS DD+  VVVVF
Sbjct:   16 SKLSIFSVIDGHGGPGCADFLQSNLTDRIKHHFATK---------CSQGETSLGLG---------------------------------------AVL-----------TACVSEAICSVDADFTKYAESVNDYSGACFVVALCYSNTICFANVGDCLGVLYNSTGKIKLPSQVHRCTIQKEIQRIAKAGAPLRDGRLGGLLVPSRSVGDLDVRLAYPGAVVAEPYVAVLELEVGQGSSHRRPFLLLASDGIWDSMQTTAAAKHVKRTLKEKGWDLGAFHSDEGIELTPDPAKSLVEAAKKLGSVDDIAAVVVVF 271          
BLAST of mRNA_P-wetherbeei_contig192.2.1 vs. uniprot
Match: K3WGL1_GLOUD (PPM-type phosphatase domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGL1_GLOUD)

HSP 1 Score: 95.1 bits (235), Expect = 5.620e-17
Identity = 65/178 (36.52%), Postives = 90/178 (50.56%), Query Frame = 2
Query:  947 SGSTAILGTYQDGILVMAGIGDSGGLFCDHTGDFQILCPRHTTDNPREVERVLSMGGKIIGNRVGGVLMPTRSLGDLDVKQQCGE-------GVVSPVPEMAFARVVAAPAPAPLPFLVLASDGLFDVMTYKAVADLARKSLKAKFSKWPARDTADELVRAALQLGSKDDVTVVVVVF 1459
            +GSTA+    Q    ++A +GDS  + C   G  +  C  HT D+  E  R+L+  GKI   R+ G L  +R+ GDLD K   GE        +V   P++    + A        F+VLA DGLFDVMT + V D  RK L         +   +ELV  AL +GS+D+VT V+V F
Sbjct:  229 AGSTAVALLVQGSKALIASVGDSQAVLCTRNGQARNYCTPHTPDSATERARILAANGKITDGRIFGFLGVSRAFGDLDFKTGRGEFKNRFKGDLVIATPDVVEHDIAAHDE-----FIVLACDGLFDVMTPQQVVDFVRKKLALHGH---VQHACEELVSYALSIGSEDNVTAVIVCF 398          
BLAST of mRNA_P-wetherbeei_contig192.2.1 vs. uniprot
Match: A0A6B2L4X3_9EUKA (PPM-type phosphatase domain-containing protein n=2 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L4X3_9EUKA)

HSP 1 Score: 91.7 bits (226), Expect = 6.920e-16
Identity = 64/193 (33.16%), Postives = 100/193 (51.81%), Query Frame = 2
Query:  884 TNTFATLEAVHCEWAQDSGDLSGSTAILGTYQDGILVMAGIGDSGGLFCDHTGDFQILCPRHTTDNPREVERVLSMGGKIIGNRVGGVLMPTRSLGDLDVKQQCGEGVVSPVPEMAFARVVAAPAPAPLPFLVLASDGLFDVMTYKAVADLARKSLKAKFSKWPARDTADELVRAALQLGSKDDVTVVVVVFE 1462
            T  F  ++    + A   G   GST I      G LV+A +GDS  + C+  G    L   H   +P+E ER+   GG++IG R+   L  +RS GD++ K+   E  ++  PE+    + A        F+V++SDGL++V T + V D  RK LK K ++      A EL+  A+  G+ D+V++V+V FE
Sbjct:   56 TRMFKDVDKKWLDMAAIEGWKDGSTGICAVLSHGELVVANVGDSRAILCED-GKTLPLSTDHKPTSPKEAERIERNGGRVIGGRLQAALDVSRSFGDIEFKK---EKYLTSEPELTRHALSAESE-----FVVVSSDGLYEVFTNEEVIDWIRKGLKTKETQ--LSHLAHELIEEAIDRGAADNVSIVIVKFE 237          
BLAST of mRNA_P-wetherbeei_contig192.2.1 vs. uniprot
Match: D7FQA0_ECTSI (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA0_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.240e-15
Identity = 65/193 (33.68%), Postives = 100/193 (51.81%), Query Frame = 2
Query:  872 AVATTNTFATLEAVHCEWAQDSGDLSGSTAILGTYQDGILVMAGIGDSGGLFCDHTGDFQILCPRHTTDNPREVERVLSMGGKIIGNRVGGVLMPTRSLGDLDVKQQCGEGVVSPVPEMAFARVVAAPAPAPLPFLVLASDGLFDVMTYKAVADLARKSLKAKFSKWPARDTADELVRAALQLGSKDDVTVVV 1450
            A A     A++E  + +W++ SGD SG  A +   +  +L  A +GD   +     G    L   H   +  E  R+ S GGK++  RV GVL P+R +GD D+K+    G V   P +    +       P   LV+ASDG++D MT  +V+ L  ++++ +  K P R  + ELV AA + GS DD+TVV+
Sbjct:  147 ASAVEEGVASVEQAYTDWSKRSGDTSGCCACVVAIRGSVLCAANVGDCQAILITDKGAIVSLSRPHRAVDLDEKARIRSNGGKVVQGRVMGVLEPSRVIGDYDIKRTW-PGCVIAEPYVLVRSLPYTRGQEPS-ILVVASDGVWDFMTQASVSKLVTEAIRKQ--KDP-RQVSKELVAAAREAGSGDDITVVI 334          
BLAST of mRNA_P-wetherbeei_contig192.2.1 vs. uniprot
Match: A0A5D6XX32_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XX32_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.970e-15
Identity = 67/178 (37.64%), Postives = 90/178 (50.56%), Query Frame = 2
Query:  947 SGSTAILGTYQDGILVMAGIGDSGGLFCDHTGDFQILCPRHTTDNPREVERVLSMGGKIIGNRVGGVLMPTRSLGDLDVKQQCGE-------GVVSPVPEMAFARVVAAPAPAPLPFLVLASDGLFDVMTYKAVADLARKSLKAKFSKWPARDTADELVRAALQLGSKDDVTVVVVVF 1459
            SGSTAI    +    V+A +GDS  + C   G  Q  C  HT   P E  R+L+  GKI   R+ G L  +R+ GD D K   G         +V   PE+A  ++          FLVLASDGLFDVM  + V D  RK L    +   A+  ++ELV  A+ +GS D+V+ V+V F
Sbjct:  216 SGSTAIAVLIRGATAVVAAVGDSQAVLCSR-GQAQNCCALHTPSAPAERARILAANGKISEGRIFGFLGVSRAFGDNDFKTGKGAFKDRFNGDLVIATPEIAELQLAKHDE-----FLVLASDGLFDVMAPQQVVDFVRKKLAQHGN---AQHASEELVSHAISIGSTDNVSAVIVCF 384          
BLAST of mRNA_P-wetherbeei_contig192.2.1 vs. uniprot
Match: A0A7S4T8E3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T8E3_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.980e-15
Identity = 68/189 (35.98%), Postives = 99/189 (52.38%), Query Frame = 2
Query:  917 CEWAQDSGDLSGSTA--ILGTYQDGILVMAGIGDSGGLFCDHTGDFQILCPRHTTDNPREVERVLSMGGKIIGNRVGGVLMPTRSLGDLDVKQQCGEG---VVSPVPEMAFARVVAAPAPAPLPFLVLASDGLFDVMTYKAVADLARKSLKAKFSKWPARDTADELVRAALQLGSKDDVTVVVVVFE*K 1468
            C+  +   D SGST   IL    +G L +A +GDS  +     G   +L   H   N  E  R+++ GG I  NRV GVL  TR+ GD+  K   G+G   ++ P+P+++   +  A       FLVLASDGL+D+M  + V +  RKSL  K            +V  AL+LGS D+V+VV+++F  K
Sbjct:  451 CQGLRQESDTSGSTGLIILLDSLNGKLTVANVGDSRCVL-SRGGAAMVLTTDHRVTNNTERRRIIARGGNIKNNRVNGVLAVTRAFGDVQHKD-IGDGKHNIIDPIPDISSYDIQNALDE----FLVLASDGLWDIMLPQQVVNFVRKSLSVKKQHNNIDLITKNVVNEALRLGSVDNVSVVIIIFNNK 633          
BLAST of mRNA_P-wetherbeei_contig192.2.1 vs. uniprot
Match: A0A067C0L6_SAPPC (PPM-type phosphatase domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C0L6_SAPPC)

HSP 1 Score: 88.6 bits (218), Expect = 2.520e-15
Identity = 72/229 (31.44%), Postives = 114/229 (49.78%), Query Frame = 2
Query:  821 RSDAVLIDEDMAPFLKRAVATTNTFATLEAVHCEWAQDSGDLSGSTAI-LGTYQDGILVMAGIGDSGGLFCDHTGDFQI-----------------LCPRHTTDNPREVERVLSMGGKIIGNRVGGVLMPTRSLGDLDVKQQCGEGVVSPVPEMAFARVVAAPAPAPLPFLVLASDGLFDVMTYKAVADLARKSLKAKFSKWPARDTADELVRAALQLGSKDDVTVVVV 1453
            ++  V + ++ +   K ++ T    ATLEA   + A D+ D SG+  + L   QDG         S   F  + GD +I                 L   H    P E  R+L  GG ++G RV GVL P+RS+GD+D+K +  EG V  VPE++  ++      A     VLA+DG++DV++   V D+A   L  ++ K   R  +D + + A++ GS+DD+T +VV
Sbjct:  112 KTHLVSVIDEQSEITKASLETA--VATLEARFNQIAADASDYSGACFVALLVLQDG---------SHRRFVMNLGDCRIAALEVSPQAHPKRQVHALSTDHKASCPLEKRRILVAGGSVVGGRVAGVLAPSRSIGDIDMKAKGMEGWVVAVPEISEGKI------ARNSIYVLATDGVWDVLSNDEVLDIAEDVLDDEYEKNCQR-ASDAIAKEAVERGSRDDITAIVV 322          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig192.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBY9_9PHAE2.220e-7341.89PPM-type phosphatase domain-containing protein n=1... [more]
D8LEW5_ECTSI3.220e-6944.04GJ12915 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A836CMW2_9STRA6.310e-2328.75Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A7S3XLZ6_HETAK5.180e-1726.35Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K3WGL1_GLOUD5.620e-1736.52PPM-type phosphatase domain-containing protein n=1... [more]
A0A6B2L4X3_9EUKA6.920e-1633.16PPM-type phosphatase domain-containing protein n=2... [more]
D7FQA0_ECTSI1.240e-1533.68PPM-type phosphatase domain-containing protein n=2... [more]
A0A5D6XX32_9STRA1.970e-1537.64PPM-type phosphatase domain-containing protein n=1... [more]
A0A7S4T8E3_9STRA1.980e-1535.98Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A067C0L6_SAPPC2.520e-1531.44PPM-type phosphatase domain-containing protein n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig192contigP-wetherbeei_contig192:2314..5572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog65071.PYU1_T004102
PFAMsPP2C
Model size2340
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons6
Evalue2.38e-19
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota,1MD9Y@121069|Pythiales
DescriptionSigma factor PP2C-like phosphatases
Cds size615
COG categoryT
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig192.2.1prot_P-wetherbeei_contig192.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig192 3510..4697 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186165.96118-UTR-P-wetherbeei_contig192:2313..24011683186165.96118-UTR-P-wetherbeei_contig192:2313..2401Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig192 2314..2401 +
1683186165.9698992-UTR-P-wetherbeei_contig192:2603..28581683186165.9698992-UTR-P-wetherbeei_contig192:2603..2858Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig192 2604..2858 +
1683186165.977455-UTR-P-wetherbeei_contig192:3002..35091683186165.977455-UTR-P-wetherbeei_contig192:3002..3509Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig192 3003..3509 +
1683186166.0155458-UTR-P-wetherbeei_contig192:4697..55721683186166.0155458-UTR-P-wetherbeei_contig192:4697..5572Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig192 4698..5572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186165.9852636-CDS-P-wetherbeei_contig192:3509..36271683186165.9852636-CDS-P-wetherbeei_contig192:3509..3627Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig192 3510..3627 +
1683186165.9929764-CDS-P-wetherbeei_contig192:3825..39081683186165.9929764-CDS-P-wetherbeei_contig192:3825..3908Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig192 3826..3908 +
1683186166.0004401-CDS-P-wetherbeei_contig192:4128..42931683186166.0004401-CDS-P-wetherbeei_contig192:4128..4293Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig192 4129..4293 +
1683186166.0080087-CDS-P-wetherbeei_contig192:4448..46971683186166.0080087-CDS-P-wetherbeei_contig192:4448..4697Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig192 4449..4697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig192.2.1

>prot_P-wetherbeei_contig192.2.1 ID=prot_P-wetherbeei_contig192.2.1|Name=mRNA_P-wetherbeei_contig192.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=205bp
MAPFLKRAVATTNTFATLEAVHCEWAQDSGDLSGSTAILGTYQDGILVMA
GIGDSGGLFCDHTGDFQILCPRHTTDNPREVERVLSMGGKIIGNRVGGVL
MPTRSLGDLDVKQQCGEGVVSPVPEMAFARVVAAPAPAPLPFLVLASDGL
FDVMTYKAVADLARKSLKAKFSKWPARDTADELVRAALQLGSKDDVTVVV
VVFE*
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mRNA from alignment at P-wetherbeei_contig192:2314..5572+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig192.2.1 ID=mRNA_P-wetherbeei_contig192.2.1|Name=mRNA_P-wetherbeei_contig192.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3259bp|location=Sequence derived from alignment at P-wetherbeei_contig192:2314..5572+ (Phaeothamnion wetherbeei SAG_119_79)
TCAGGCGAGCAAGCTGTTTCTGGGAAAGAATCACGGCTCAACCGGGAATT CTCGGCATCCTGCTCCGGCTTTCGAGAAGGAAGGAGAGGTGAGAGCATAG GCTTCATTTGGATCATGAATCGCTTAACATTCTGTTACCAGGTTGGGTAA CCGCGCGAAAATGGCCGTCGCTGTTTTAAATGGAAAAAGTATGACCTGGT CCGCATCTTTATCTTTATTTTCGTTTACGATTGTTTCGTCTCCATCCTGT ACCTTCTTCTTAAAAGAAATTCTCCTCTGTTCCACCGCAGCTTGCAGTTT CGCAGACTGGGACGGAGATTATCCATTCAGACGATGTCGAGGACGACAAG GAACCCGAGCCATTCTGGAGTCAGTCAGAGACGACAAATGCAGCCAACGA CTTCTTAAAGAGCAGCAAAAGACTTGCATGGAGCGCCGTCAGCAAACCGG GTGAAATGCGAAAGCAGACGGCGCTGTCCGACCTGTGGCAGGGGCAGGCC GAGTATAGAACAAATCGCCGCAGCCTCTCGAGCATGAGCGCAGAGGTACG GCTGAAAGCACAGAACTGCGACGGACGACTGAAGGAGCAAAGCCGGTTTC ATGTTCTTTCTTTCGCCGGCATTTTCGCCCGCCTTCTGTGCTGACAAGAC CATTGCTCGGTCCCTACGCCCTATTCTGCCTGACTGCAGTATTACGCGCA GGAGCAGAAGTGGGCGGCGCTTCCCCCTGCCCGAGTCCGATGCGTCATGA CGGCGACCGTCGTCGGCTTCAAACACAGCGTCGTCGACGAGCCGAGCGAG GACCGCATGGCCGTCCACGAAGCCGTCACCCCCGTCGTCGACTCTGCGCT CTGCGAGGAACTGGGCATCTCCGCCACCGCCGTCGACGAGTCGCCGTTCG CGCTCTTCGCGGTATTCGACGGCCACGGTGGCTCGACATGTGCCGATTTT CTGAGCAAGTCGGTCGCCACAGTCATGGCAAAGTGAGGGGAAAGCAAGTG GTTGTTTTTCTGCGTTCTAGTTTTCTGCAGTTTCTCGATTTCGTCCGTTC CGCTGTCCCTTAATTCCAGTTTCCGTCCCTTGATTCTTTGTGCTGTTTCT CCACCTCAGGTGTTTAAACCGTACCAGTTCACGTCCCCATATGTCCCGCC TTTCTCTTCTTCGAACCGCAGCGACGCGGTGCTGATTGACGAGGATATGG CGCCGTTCCTGAAGCGGGCGGTGGCAACCACCAACACCTTCGCCACCCTC GAGGCGGTGCACTGCGAGTGGGCCCAAGACTCGGGCGACCTCAGCGGATC CACCGCCATCCTCGGTGGGTTTCTTACTGGGCTATGGTCTTCGATCATTT TCGCCGCGCACCTCTCTCCTGGCCTGAAATCTCTCCTGGCGGTGGTGAAA AGTCCGGCATGACTGCTTGGTCTCGCAGCAAATCTGAGTTCTGACTGTTC CGAGTTTGCTTTTCTTTCCACTTTGTGCTTTTGCATTCACGTGCCTTTGT CTTCATCTGCAGGCACGTACCAGGATGGCATACTGGTGATGGCCGGAATT GGAGATTCAGGTGGTCTCTTCTGCGACCACACCGGCGATTTTCAGGTATG TATGGTCAGGCTGCCATCACGGTGGCACTAATTCCTGCGAAGGTAGCCAG CTAAAAGCCGTAGATGCATCTGTCTGTGCAACCACCTCTCTGCCCATCCT GAATGAGGAAAGTAGACCTTGCTGAAGAGGCCAGGATAAGAAGAAAGACT GGCGCGAACTCATCCTCCCACCCTGTTCCGTCTTTTCTTCCCATCCGCCG CGCGCCCGTGAGCAGATCCTGTGCCCACGGCACACGACAGACAACCCGCG AGAGGTGGAGCGGGTGCTGTCCATGGGCGGCAAGATCATCGGCAACCGTG TCGGCGGCGTACTCATGCCCACCCGCTCCCTCGGGGACCTCGACGTCAAG CAGCAGTGCGGGGAGGGCGTCGTCTCGCCGGTGCGTGCATCGAAAGCACG TTCGTCCCGCTTCTTGAGGGAGAATACCGGAAATCCGCTGTTGTCCATGC TTTTCTATTCCCTCATACGAGAAGCGGCCGTGAGCTGTGGGTTTCTTACC GACGCCTTTCGCCAGCCTGCCGTGTCTGCACGCAGGTCCCGGAGATGGCC TTCGCCCGCGTCGTGGCCGCCCCGGCGCCGGCGCCCCTGCCATTCCTGGT GCTGGCGAGCGACGGCCTCTTCGACGTCATGACTTACAAGGCGGTCGCCG ATTTGGCGCGGAAGTCGCTAAAGGCAAAGTTCAGCAAGTGGCCGGCGCGG GACACCGCGGACGAGCTGGTGCGAGCTGCGTTGCAGCTCGGGAGCAAGGA TGATGTCACCGTAGTCGTCGTCGTCTTTGAATAAAAAGGCGGGGTGGGCG AGGCGGGGGCGGCGGCGGACGGCGACGGCAGGCAGGACAGCGCCGGCGGA GGCACGACGCAGCGAATGAAGGCAGTGCAGTGCGGCAAAGGCGGCGCATA GCGGGGGAAGCAGCGCAGCGCGGCAGGAGCAGCGGAGCGTGGCAGCGCGA GCACTGATATGGTTGCAGCAGTGGCCGCGGCGTTGTCGCGGCAGCAATCA CCACAGCAATGATGCAGCGGCAGTGGCCGCAACACTGGGGCAGGTGCAGT GGTCGCAGCGATGGCGCGGCGGCTAAGGCGGCGGCGATGGCGCCACCGCG GCTGCACCACTGCGGCGTCAACAGCGATGACATCTTAGGTCGTTGGCTGG CAGCAACTTTACTTACTATTGCGGTATGACAGGGGCACAGAATCGTCCCA TAAGATCCCGAGCAGGTGTGACAATGGCGGGCATGCCATCGGCGGCGGTA AAATCGGCAGAACAGCGGCATTGATGCGCGAGCGGCGGCATTGATGCAAG GGAACGTGTACCTTCAATTTGTGGTTATGGTGGAGGTAGTTCCGATGTCT TACAGGCATGTCTGGCGATGCGCCGCCGGCACGCGTTTGGCTTTGGGTCG CGATTTGGACCTTTAATGACGGTTTTCTGTGGACGTGCACAGAAAGGACT TGAGAATATATAGCAGGCGCCGGCATGGCGGCTGTGCGGCGGTACTTATG GCCTTCGTTGGCCGTACTTACGAATGCCGCGGCGGCAGGGGGCGGGGGCG GGAAAGGCAAGGCGGCTGAATGAGGCAGCAGAACGATGCGCCAAGAAGGC AGGTTGCTCAAATGGTCCACCAAAAAACTTCTGAAGTAACTGAAGTCGTA CATTACCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig192:2314..5572+

>mRNA_P-wetherbeei_contig192.2.1 ID=mRNA_P-wetherbeei_contig192.2.1|Name=mRNA_P-wetherbeei_contig192.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=615bp|location=Sequence derived from alignment at P-wetherbeei_contig192:2314..5572+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCCGTTCCTGAAGCGGGCGGTGGCAACCACCAACACCTTCGCCAC
CCTCGAGGCGGTGCACTGCGAGTGGGCCCAAGACTCGGGCGACCTCAGCG
GATCCACCGCCATCCTCGGCACGTACCAGGATGGCATACTGGTGATGGCC
GGAATTGGAGATTCAGGTGGTCTCTTCTGCGACCACACCGGCGATTTTCA
GATCCTGTGCCCACGGCACACGACAGACAACCCGCGAGAGGTGGAGCGGG
TGCTGTCCATGGGCGGCAAGATCATCGGCAACCGTGTCGGCGGCGTACTC
ATGCCCACCCGCTCCCTCGGGGACCTCGACGTCAAGCAGCAGTGCGGGGA
GGGCGTCGTCTCGCCGGTCCCGGAGATGGCCTTCGCCCGCGTCGTGGCCG
CCCCGGCGCCGGCGCCCCTGCCATTCCTGGTGCTGGCGAGCGACGGCCTC
TTCGACGTCATGACTTACAAGGCGGTCGCCGATTTGGCGCGGAAGTCGCT
AAAGGCAAAGTTCAGCAAGTGGCCGGCGCGGGACACCGCGGACGAGCTGG
TGCGAGCTGCGTTGCAGCTCGGGAGCAAGGATGATGTCACCGTAGTCGTC
GTCGTCTTTGAATAA
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