mRNA_P-wetherbeei_contig19158.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19158.1.1
Unique NamemRNA_P-wetherbeei_contig19158.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19158.1.1 vs. uniprot
Match: A0A6H5JPX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPX3_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 6.700e-47
Identity = 72/104 (69.23%), Postives = 91/104 (87.50%), Query Frame = 1 
Query:    1 ARQEPLKVVLLGNTAVGKTNIVACFQNHEFSDEYRSTVGVEFITKRVEIDGTIVKLQQIWDTAGQERFAAMMKTYYRKAKGALLIYDVTEPSSFTGLEVWRKHL 312
            + +EPLKV+LLGN+ VGK+N++A F N++FS+++ STVGVEF+TKR+ +DG  VKLQ IWDTAGQER+A+MMKTYYRKAKG+LL+YDVT  SSF GLE WRKHL
Sbjct:    2 SEEEPLKVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQ-IWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHL 104
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BLAST of mRNA_P-wetherbeei_contig19158.1.1 vs. uniprot
Match: D8LCK0_ECTSI (Rab11D, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK0_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 1.790e-45
Identity = 70/104 (67.31%), Postives = 88/104 (84.62%), Query Frame = 1 
Query:    1 ARQEPLKVVLLGNTAVGKTNIVACFQNHEFSDEYRSTVGVEFITKRVEIDGTIVKLQQIWDTAGQERFAAMMKTYYRKAKGALLIYDVTEPSSFTGLEVWRKHL 312
            + +EPLKV+LLGN+ VGK+N++A F N++FS+++ STVGVEF+TKR+ +DG  VKLQ IWDTAGQER+A+MMKTYYRKAKG+LL YD T   SF GLE WRKHL
Sbjct:    2 SEEEPLKVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQ-IWDTAGQERYASMMKTYYRKAKGSLLFYDFTNRFSFVGLEAWRKHL 104
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BLAST of mRNA_P-wetherbeei_contig19158.1.1 vs. uniprot
Match: A0A835YTJ1_9STRA (GTPase Ypt3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTJ1_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.890e-43
Identity = 67/101 (66.34%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:   10 EPLKVVLLGNTAVGKTNIVACFQNHEFSDEYRSTVGVEFITKRVEIDGTIVKLQQIWDTAGQERFAAMMKTYYRKAKGALLIYDVTEPSSFTGLEVWRKHL 312
            +P+KVVLLGN+ VGK+N++A +  +EFS+E+ ST+GVEF+TK++E+DG  ++LQ IWDTAGQER+A+MMKTYYRKAKGALL+YDVT  SSF  LE+WRK+L
Sbjct:    4 DPVKVVLLGNSGVGKSNLIARYHANEFSNEFMSTIGVEFVTKKIEVDGVAIRLQ-IWDTAGQERYASMMKTYYRKAKGALLVYDVTSQSSFDSLEIWRKNL 103
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BLAST of mRNA_P-wetherbeei_contig19158.1.1 vs. uniprot
Match: A0A836CB79_9STRA (Ras family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB79_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.110e-38
Identity = 62/101 (61.39%), Postives = 85/101 (84.16%), Query Frame = 1 
Query:   10 EPLKVVLLGNTAVGKTNIVACFQNHEFSDEYRSTVGVEFITKRVEIDGTIVKLQQIWDTAGQERFAAMMKTYYRKAKGALLIYDVTEPSSFTGLEVWRKHL 312
            +P+KV+LLG++ VGK+N++A + +  FS E+ ST+GVEF+TK++E+DG  V LQ IWDTAGQER+AAMMKTYYR+AKGA+L+YDVT+ +SF  LE+WR  L
Sbjct:   36 QPMKVILLGSSGVGKSNLIARYHSDSFSTEFMSTIGVEFVTKKIEVDGQAVWLQ-IWDTAGQERYAAMMKTYYRRAKGAVLVYDVTDATSFEALELWRAAL 135
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BLAST of mRNA_P-wetherbeei_contig19158.1.1 vs. uniprot
Match: A0A6V2T6F4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2T6F4_HETAK)

HSP 1 Score: 122 bits (306), Expect = 8.300e-33
Identity = 56/104 (53.85%), Postives = 83/104 (79.81%), Query Frame = 1 
Query:    1 ARQEPLKVVLLGNTAVGKTNIVACFQNHEFSDEYRSTVGVEFITKRVEIDGTIVKLQQIWDTAGQERFAAMMKTYYRKAKGALLIYDVTEPSSFTGLEVWRKHL 312
            ++++  KVVLLGN+ VGK+ +++   ++EFS+++ ST+GVEF+TK+++I+G +VK+Q IWDTAGQER+AAMM TYYRKA+GA+L Y+   P SF  +E WR  L
Sbjct:    6 SQEQQYKVVLLGNSGVGKSAVLSRLYSNEFSEDFLSTIGVEFLTKQLDINGEMVKVQ-IWDTAGQERYAAMMGTYYRKARGAVLCYEAVRPESFESVENWRTEL 108
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BLAST of mRNA_P-wetherbeei_contig19158.1.1 vs. uniprot
Match: A0A6G0W803_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W803_9STRA)

HSP 1 Score: 123 bits (308), Expect = 6.900e-32
Identity = 58/98 (59.18%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:   19 KVVLLGNTAVGKTNIVACFQNHEFSDEYRSTVGVEFITKRVEIDGTIVKLQQIWDTAGQERFAAMMKTYYRKAKGALLIYDVTEPSSFTGLEVWRKHL 312
            KV+LLGN+ VGKTN+++     EFS ++ ST+GVEF+T  +E+DG IVK Q IWDTAGQERF AMM TYYRKA GALL++DVT+ ++F G++ W   L
Sbjct:  146 KVILLGNSGVGKTNLLSRLAKGEFSTDFASTIGVEFLTHSMEVDGVIVKAQ-IWDTAGQERFHAMMSTYYRKAVGALLVFDVTDKTTFDGIQKWLDQL 242
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BLAST of mRNA_P-wetherbeei_contig19158.1.1 vs. uniprot
Match: A0A2D4BEA3_PYTIN (Rab11 family GTPase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BEA3_PYTIN)

HSP 1 Score: 122 bits (306), Expect = 1.000e-31
Identity = 60/98 (61.22%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:   19 KVVLLGNTAVGKTNIVACFQNHEFSDEYRSTVGVEFITKRVEIDGTIVKLQQIWDTAGQERFAAMMKTYYRKAKGALLIYDVTEPSSFTGLEVWRKHL 312
            K+++LGN+ VGKTN+++     EFSDE+ STVGVEF+T  +++DG  VK Q IWDTAGQERF AMM TYYRKA GALLI+DVT+  SF G+E W + L
Sbjct:  117 KIIMLGNSGVGKTNLLSRLNKGEFSDEFTSTVGVEFLTHVMKVDGMDVKAQ-IWDTAGQERFHAMMATYYRKAVGALLIFDVTDRLSFLGVEKWLEQL 213
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BLAST of mRNA_P-wetherbeei_contig19158.1.1 vs. uniprot
Match: A0A485LS46_9STRA (Aste57867_24372 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS46_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.180e-31
Identity = 59/98 (60.20%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:   19 KVVLLGNTAVGKTNIVACFQNHEFSDEYRSTVGVEFITKRVEIDGTIVKLQQIWDTAGQERFAAMMKTYYRKAKGALLIYDVTEPSSFTGLEVWRKHL 312
            KV+LLGN+ VGKTN+++     EFS ++ ST+GVEF+T  +EIDGT VK Q IWDTAGQERF AMM TYYRKA GALL++DVT+ ++F G++ W   L
Sbjct:  153 KVILLGNSGVGKTNLLSRLAKGEFSTDFASTIGVEFLTHCMEIDGTSVKAQ-IWDTAGQERFHAMMSTYYRKAVGALLVFDVTDKTTFDGVQKWLDQL 249
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BLAST of mRNA_P-wetherbeei_contig19158.1.1 vs. uniprot
Match: W4FUJ0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FUJ0_9STRA)

HSP 1 Score: 119 bits (299), Expect = 2.780e-31
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:   19 KVVLLGNTAVGKTNIVACFQNHEFSDEYRSTVGVEFITKRVEIDGTIVKLQQIWDTAGQERFAAMMKTYYRKAKGALLIYDVTEPSSFTGLEVWRKHL 312
            KV+LLGN+ VGKTN+++     EFS ++ ST+GVEF+T  +E+DG  VK Q IWDTAGQERF AMM TYYRKA GALL++DVT+ ++F G++ W   L
Sbjct:  146 KVILLGNSGVGKTNLLSRLAKGEFSTDFASTIGVEFLTHVMEVDGVPVKAQ-IWDTAGQERFHAMMSTYYRKAVGALLVFDVTDKTTFDGIQKWLDQL 242
[Close]
BLAST of mRNA_P-wetherbeei_contig19158.1.1 vs. uniprot
Match: A0A024T985_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T985_9STRA)

HSP 1 Score: 120 bits (301), Expect = 7.440e-31
Identity = 57/98 (58.16%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:   19 KVVLLGNTAVGKTNIVACFQNHEFSDEYRSTVGVEFITKRVEIDGTIVKLQQIWDTAGQERFAAMMKTYYRKAKGALLIYDVTEPSSFTGLEVWRKHL 312
            KV+LLGN+ VGKTN+++     EFS ++ ST+GVEF+T+ +E+DG  VK Q IWDTAGQERF AMM TYYRKA GALL++DVT+ ++F G++ W   L
Sbjct:  142 KVILLGNSGVGKTNLLSRLAKGEFSTDFASTIGVEFLTQVMEVDGVQVKAQ-IWDTAGQERFHAMMSTYYRKAVGALLVFDVTDKTTFDGIQKWLDQL 238
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19158.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPX3_9PHAE6.700e-4769.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCK0_ECTSI1.790e-4567.31Rab11D, RAB family GTPase n=1 Tax=Ectocarpus silic... [more]
A0A835YTJ1_9STRA1.890e-4366.34GTPase Ypt3 n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A836CB79_9STRA2.110e-3861.39Ras family-domain-containing protein n=1 Tax=Tribo... [more]
A0A6V2T6F4_HETAK8.300e-3353.85Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6G0W803_9STRA6.900e-3259.18Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A2D4BEA3_PYTIN1.000e-3161.22Rab11 family GTPase, putative n=1 Tax=Pythium insi... [more]
A0A485LS46_9STRA2.180e-3160.20Aste57867_24372 protein n=1 Tax=Aphanomyces stella... [more]
W4FUJ0_9STRA2.780e-3158.16Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024T985_9STRA7.440e-3158.16Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19158contigP-wetherbeei_contig19158:866..1303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LCK0
PFAMsGCK,Ras
Model size312
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.93e-46
EggNOG OGsCOG1100@1|root,KOG0087@2759|Eukaryota
DescriptionGTPase activity
Cds size312
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186165.1478646-CDS-P-wetherbeei_contig19158:865..10361683186165.1478646-CDS-P-wetherbeei_contig19158:865..1036Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19158 866..1036 +
1683186165.1591449-CDS-P-wetherbeei_contig19158:1162..13031683186165.1591449-CDS-P-wetherbeei_contig19158:1162..1303Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19158 1163..1303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19158.1.1prot_P-wetherbeei_contig19158.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19158 866..1303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19158.1.1

>prot_P-wetherbeei_contig19158.1.1 ID=prot_P-wetherbeei_contig19158.1.1|Name=mRNA_P-wetherbeei_contig19158.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
ARQEPLKVVLLGNTAVGKTNIVACFQNHEFSDEYRSTVGVEFITKRVEID
GTIVKLQQIWDTAGQERFAAMMKTYYRKAKGALLIYDVTEPSSFTGLEVW
RKHL
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mRNA from alignment at P-wetherbeei_contig19158:866..1303+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19158.1.1 ID=mRNA_P-wetherbeei_contig19158.1.1|Name=mRNA_P-wetherbeei_contig19158.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig19158:866..1303+ (Phaeothamnion wetherbeei SAG_119_79)
GCTCGACAGGAACCTTTGAAAGTGGTGCTCCTCGGAAACACCGCTGTGGG
GAAAACCAACATTGTGGCCTGCTTTCAGAACCACGAGTTTAGCGATGAGT
ACCGCTCGACAGTAGGCGTCGAATTCATCACGAAGCGAGTCGAGATCGAC
GGAACGATAGTGAAGCTTCAGGTACGGTAAAGTGCCAGGGTCGCGGCCGT
TGTACAAACAAGCGACGGATGGCGATTCCGCAGGACCTTGCAACGATTCA
GAAAGCTTCATTCGCCAATCGAGTCGCATCCTCGCCGCCTCTCAAAGCAG
ATATGGGACACAGCGGGGCAAGAGCGCTTCGCGGCGATGATGAAGACGTA
CTATCGGAAAGCGAAGGGCGCGTTGCTCATCTACGACGTCACGGAGCCTT
CGTCATTCACGGGGCTCGAGGTCTGGCGGAAGCACCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19158:866..1303+

>mRNA_P-wetherbeei_contig19158.1.1 ID=mRNA_P-wetherbeei_contig19158.1.1|Name=mRNA_P-wetherbeei_contig19158.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig19158:866..1303+ (Phaeothamnion wetherbeei SAG_119_79)
GCTCGACAGGAACCTTTGAAAGTGGTGCTCCTCGGAAACACCGCTGTGGG
GAAAACCAACATTGTGGCCTGCTTTCAGAACCACGAGTTTAGCGATGAGT
ACCGCTCGACAGTAGGCGTCGAATTCATCACGAAGCGAGTCGAGATCGAC
GGAACGATAGTGAAGCTTCAGCAGATATGGGACACAGCGGGGCAAGAGCG
CTTCGCGGCGATGATGAAGACGTACTATCGGAAAGCGAAGGGCGCGTTGC
TCATCTACGACGTCACGGAGCCTTCGTCATTCACGGGGCTCGAGGTCTGG
CGGAAGCACCTT
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