mRNA_P-wetherbeei_contig19107.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19107.1.1
Unique NamemRNA_P-wetherbeei_contig19107.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A2E0RW76_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RW76_9ACTN)

HSP 1 Score: 67.8 bits (164), Expect = 1.610e-11
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  214 AIDVHDELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRKEV 399
            A D  DEL D +  L +RQ+A +V+RY LDL+EADIA AL+CRP TV+S+  R L  +RKE+
Sbjct:  105 ASDPVDELIDIIADLSYRQRAVVVMRYWLDLSEADIAQALECRPGTVKSLHSRALAAIRKEL 166          
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A7K1B8P8_9ACTN (Sigma-70 family RNA polymerase sigma factor n=2 Tax=root TaxID=1 RepID=A0A7K1B8P8_9ACTN)

HSP 1 Score: 67.0 bits (162), Expect = 2.750e-11
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1
Query:  232 ELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRKEV 399
            EL DAL+ LP RQ+ A+VLRY  DL EA+IA  LDCRP+TVR+++ RGL  LR  +
Sbjct:  104 ELRDALQQLPARQRTAIVLRYLCDLPEAEIADILDCRPTTVRTLVHRGLADLRTRI 159          
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A538IX50_9ACTN (SigE family RNA polymerase sigma factor n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538IX50_9ACTN)

HSP 1 Score: 67.0 bits (162), Expect = 3.550e-11
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 1
Query:  196 IAAQELAIDVHDELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRKEVVS 405
            I A   +++    L  ALR LP RQ+AALVLR++ D +EA  A  + CRP TV+S++ R L+TLRKE+ S
Sbjct:  101 IGAPAHSVEDRQALAAALRKLPQRQRAALVLRFYEDQSEAQTADLIGCRPGTVKSLVSRALETLRKEIGS 170          
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A542DXX0_9MICO (RNA polymerase sigma-70 factor (Sigma-E family) n=1 Tax=Lapillicoccus jejuensis TaxID=402171 RepID=A0A542DXX0_9MICO)

HSP 1 Score: 66.6 bits (161), Expect = 5.070e-11
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:  217 IDVHDELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRKE 396
            +D    L   L  LP RQ+AALVLRY+LDL E +IATA+ CRP+TVRS++ RGL  LR +
Sbjct:  103 LDDRSALWLMLLTLPERQRAALVLRYYLDLPETEIATAIGCRPATVRSLVSRGLAALRTQ 162          
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A1H0TQV6_9ACTN (RNA polymerase sigma-70 factor, sigma-E family n=2 Tax=Klenkia soli TaxID=1052260 RepID=A0A1H0TQV6_9ACTN)

HSP 1 Score: 66.6 bits (161), Expect = 5.760e-11
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1
Query:  223 VHDELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLR 390
            V D+L   L GLP RQ+AALVLRY+ DL + +IA  L CRP TVRS++ RGL TLR
Sbjct:  112 VDDQLWHRLPGLPARQRAALVLRYYEDLDDDEIAECLACRPGTVRSLVSRGLATLR 167          
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A1M5GG82_9ACTN (RNA polymerase sigma-70 factor, sigma-E family n=1 Tax=Jatrophihabitans endophyticus TaxID=1206085 RepID=A0A1M5GG82_9ACTN)

HSP 1 Score: 66.6 bits (161), Expect = 7.200e-11
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 1
Query:  229 DELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLR 390
            D+L D L GLP RQ+AALVLR+  DL +AD A AL CR  TVRS+I RGL TLR
Sbjct:  129 DQLRDVLAGLPDRQRAALVLRFFEDLDDADTADALGCRVGTVRSLISRGLATLR 182          
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A538B126_9ACTN (SigE family RNA polymerase sigma factor n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538B126_9ACTN)

HSP 1 Score: 65.1 bits (157), Expect = 1.690e-10
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  244 ALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRKEV 399
            AL  LP RQ+AA+VLR++LDL+EA+ A AL CRP T +S++ RGL TLR E+
Sbjct:  112 ALLRLPHRQRAAIVLRFYLDLSEAETAEALRCRPGTAKSLVSRGLRTLRNEL 163          
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A542ZHK9_9MICO (RNA polymerase sigma-70 factor (Sigma-E family) n=1 Tax=Oryzihumus leptocrescens TaxID=297536 RepID=A0A542ZHK9_9MICO)

HSP 1 Score: 64.3 bits (155), Expect = 3.980e-10
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  190 TVIAAQELAI--DVHDELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRKEV 399
            T  +A+E A+  +  +EL  ALRGLP RQ+  LVLRY+LDLTEA IA AL   P +V+S   RGL +LR ++
Sbjct:  101 TEASAEERAVAHEQGEELLSALRGLPRRQREVLVLRYYLDLTEAQIADALGISPGSVKSHAHRGLSSLRTQM 172          
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A849A337_9ACTN (SigE family RNA polymerase sigma factor n=1 Tax=Nakamurella aerolata TaxID=1656892 RepID=A0A849A337_9ACTN)

HSP 1 Score: 64.7 bits (156), Expect = 4.090e-10
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 1
Query:  199 AAQELAIDVHDELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRKEV 399
            +AQ +A   HDEL   L  LP +QQAAL LRY+LDL++  IA  L C+P++VR  I RGL  LR E+
Sbjct:  108 SAQRIA--EHDELAQQLASLPKQQQAALALRYYLDLSDDAIAAELGCKPASVRGYISRGLAALRIEL 172          
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A372G7J9_9ACTN (RNA polymerase sigma factor n=3 Tax=Actinomadura TaxID=1988 RepID=A0A372G7J9_9ACTN)

HSP 1 Score: 64.3 bits (155), Expect = 5.040e-10
Identity = 50/134 (37.31%), Postives = 70/134 (52.24%), Query Frame = 1
Query:   61 DRSGC---VRGLAIDSHRR--REPGRLPAP----LGHQRLHSTHRHNSVVSRTVIA--------------AQELAIDVHDELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRK 393
            DR+G    V+ +    HRR  R PGRLPA     L + R    +   +++ R  +A              +  +  D    +  AL GLP RQ+ A+VLRY+LDL+EA+IA A+  R  TV+S I RGLD LR+
Sbjct:   51 DRAGAEDVVQDVYARLHRRAARGPGRLPAAPPELLAYARASVLNACRTLLRRRALARGLVQAPQPVWSAESDAMLADDRRRVLQALVGLPVRQREAIVLRYYLDLSEAEIAAAMGVRAGTVKSTISRGLDALRR 184          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E0RW76_9ACTN1.610e-1154.84Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7K1B8P8_9ACTN2.750e-1158.93Sigma-70 family RNA polymerase sigma factor n=2 Ta... [more]
A0A538IX50_9ACTN3.550e-1148.57SigE family RNA polymerase sigma factor n=2 Tax=Ac... [more]
A0A542DXX0_9MICO5.070e-1156.67RNA polymerase sigma-70 factor (Sigma-E family) n=... [more]
A0A1H0TQV6_9ACTN5.760e-1160.71RNA polymerase sigma-70 factor, sigma-E family n=2... [more]
A0A1M5GG82_9ACTN7.200e-1164.81RNA polymerase sigma-70 factor, sigma-E family n=1... [more]
A0A538B126_9ACTN1.690e-1059.62SigE family RNA polymerase sigma factor n=1 Tax=Ac... [more]
A0A542ZHK9_9MICO3.980e-1051.39RNA polymerase sigma-70 factor (Sigma-E family) n=... [more]
A0A849A337_9ACTN4.090e-1052.24SigE family RNA polymerase sigma factor n=1 Tax=Na... [more]
A0A372G7J9_9ACTN5.040e-1037.31RNA polymerase sigma factor n=3 Tax=Actinomadura T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19107contigP-wetherbeei_contig19107:330..737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog134676.ACPL_5866
Preferred namesigE
PFAMsSigma70_r2,Sigma70_r4_2
Model size408
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.3e-11
EggNOG OGsCOG1595@1|root,COG1595@2|Bacteria,2GP81@201174|Actinobacteria,4DD59@85008|Micromonosporales
DescriptionBelongs to the sigma-70 factor family. ECF subfamily
Cds size408
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186164.1370778-CDS-P-wetherbeei_contig19107:329..7371683186164.1370778-CDS-P-wetherbeei_contig19107:329..737Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19107 330..737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19107.1.1prot_P-wetherbeei_contig19107.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19107 330..737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19107.1.1

>prot_P-wetherbeei_contig19107.1.1 ID=prot_P-wetherbeei_contig19107.1.1|Name=mRNA_P-wetherbeei_contig19107.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
MESAVAHGLRIGGIADARRRDRSGCVRGLAIDSHRRREPGRLPAPLGHQR
LHSTHRHNSVVSRTVIAAQELAIDVHDELGDALRGLPWRQQAALVLRYHL
DLTEADIATALDCRPSTVRSIIKRGLDTLRKEVVS*
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mRNA from alignment at P-wetherbeei_contig19107:330..737+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19107.1.1 ID=mRNA_P-wetherbeei_contig19107.1.1|Name=mRNA_P-wetherbeei_contig19107.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig19107:330..737+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGTCCGCTGTTGCGCACGGCCTACGCATTGGTGGGATCGCTGACGC TCGCCGAAGAGATCGTTCAGGATGCGTTCGTGGGCTTGCAATCGACTCGC ACCGCCGTCGTGAACCCGGGCGCCTACCTGCGCCGCTCGGTCATCAACGG TTGCACTCGACGCATCGGCACAACTCGGTTGTTTCGAGAACGGTGATCGC CGCACAGGAACTCGCCATCGACGTCCACGACGAACTCGGCGATGCGTTGC GCGGTCTGCCGTGGCGGCAGCAGGCAGCGCTGGTGCTCCGCTACCACCTT GATCTGACGGAAGCAGACATCGCCACGGCGTTGGACTGCCGGCCGAGCAC TGTCCGCTCGATCATCAAACGGGGACTCGACACGCTGCGAAAGGAAGTCG TTTCATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19107:330..737+

>mRNA_P-wetherbeei_contig19107.1.1 ID=mRNA_P-wetherbeei_contig19107.1.1|Name=mRNA_P-wetherbeei_contig19107.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig19107:330..737+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGTCCGCTGTTGCGCACGGCCTACGCATTGGTGGGATCGCTGACGC
TCGCCGAAGAGATCGTTCAGGATGCGTTCGTGGGCTTGCAATCGACTCGC
ACCGCCGTCGTGAACCCGGGCGCCTACCTGCGCCGCTCGGTCATCAACGG
TTGCACTCGACGCATCGGCACAACTCGGTTGTTTCGAGAACGGTGATCGC
CGCACAGGAACTCGCCATCGACGTCCACGACGAACTCGGCGATGCGTTGC
GCGGTCTGCCGTGGCGGCAGCAGGCAGCGCTGGTGCTCCGCTACCACCTT
GATCTGACGGAAGCAGACATCGCCACGGCGTTGGACTGCCGGCCGAGCAC
TGTCCGCTCGATCATCAAACGGGGACTCGACACGCTGCGAAAGGAAGTCG
TTTCATGA
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