mRNA_P-wetherbeei_contig1910.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1910.4.1
Unique NamemRNA_P-wetherbeei_contig1910.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1910.4.1 vs. uniprot
Match: A0A835Z4U9_9STRA (Signal peptidase complex catalytic subunit SEC11C n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A835Z4U9_9STRA)

HSP 1 Score: 319 bits (818), Expect = 1.090e-106
Identity = 160/182 (87.91%), Postives = 174/182 (95.60%), Query Frame = 2 
Query:  113 VELINQQVDELKKLWKNKRQLAFQGLNLAMIVLSALMIWKSLMVITKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEVVVFTIKGRDIPIVHRVMKVHEKADGVVELLTKGDNNRVNDRDLYAPGQLWLRREDILGRARGTLRYVGMVTIILNDYPLLKYVLVGIMGLFVLTNREA 658
            ++++++QV ELKKLWKNKRQLAFQGLNLAMIVLSALMIWKSLMV+T+SESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEVVVF IK RDIPIVHR+MKVHEK DG VE+LTKGDNNRV+DR LYAPGQLWL+REDILGRARG LRYVGMVTI+LNDYP LKYVLVGIMGLFVLTN+EA
Sbjct:    1 MDIVDKQVVELKKLWKNKRQLAFQGLNLAMIVLSALMIWKSLMVVTRSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEVVVFKIKDRDIPIVHRIMKVHEKPDGTVEVLTKGDNNRVDDRGLYAPGQLWLQREDILGRARGALRYVGMVTIVLNDYPALKYVLVGIMGLFVLTNKEA 182
[Close]
BLAST of mRNA_P-wetherbeei_contig1910.4.1 vs. uniprot
Match: A0A7S0SWE0_9STRA (Signal peptidase I n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWE0_9STRA)

HSP 1 Score: 310 bits (795), Expect = 3.360e-103
Identity = 154/182 (84.62%), Postives = 169/182 (92.86%), Query Frame = 2 
Query:  113 VELINQQVDELKKLWKNKRQLAFQGLNLAMIVLSALMIWKSLMVITKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEVVVFTIKGRDIPIVHRVMKVHEKADGVVELLTKGDNNRVNDRDLYAPGQLWLRREDILGRARGTLRYVGMVTIILNDYPLLKYVLVGIMGLFVLTNREA 658
            + ++  Q  ELKKLWKNKRQL+FQGLNLAMIV SALMIWK LM ITKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGE+VVF IK RDIPIVHRVMKVHEKADG +E+LTKGDNNRV+DR LYAPGQ WL+REDILGRARGTLRY+GMVTIILNDYP+LKYVL+G+MGLFVLTN+E+
Sbjct:    1 MNIVKNQAFELKKLWKNKRQLSFQGLNLAMIVFSALMIWKGLMFITKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVMKVHEKADGKIEVLTKGDNNRVDDRGLYAPGQQWLQREDILGRARGTLRYLGMVTIILNDYPILKYVLIGVMGLFVLTNKES 182
[Close]
BLAST of mRNA_P-wetherbeei_contig1910.4.1 vs. uniprot
Match: A0A6V1QND9_HETAK (Signal peptidase complex catalytic subunit SEC11C n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QND9_HETAK)

HSP 1 Score: 307 bits (787), Expect = 5.680e-102
Identity = 158/183 (86.34%), Postives = 167/183 (91.26%), Query Frame = 2 
Query:  110 MVELINQQVDELKKLWKNKRQLAFQGLNLAMIVLSALMIWKSLMVITKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEVVVFTIKGRDIPIVHRVMKVHEKADGVVELLTKGDNNRVNDRDLYAPGQLWLRREDILGRARGTLRYVGMVTIILNDYPLLKYVLVGIMGLFVLTNREA 658
            M+ELI QQ+DELKKLWKNKR LAFQ LNLAMIV SALMIWKSLMV T+SESPVVVVLSGSMEPAFQRGDILFL N  DPIR GEVVVF IK R+IPIVHRVMKVHEK DG VE LTKGDNNRV+DR LYAPGQLWL REDILGRARGTLRYVGMVTIILNDYP+LKYVLVGIMGLFVLT++E+
Sbjct:    1 MMELIEQQLDELKKLWKNKRALAFQALNLAMIVFSALMIWKSLMVWTQSESPVVVVLSGSMEPAFQRGDILFLTNHQDPIRAGEVVVFKIKDREIPIVHRVMKVHEKGDGAVEALTKGDNNRVDDRGLYAPGQLWLGREDILGRARGTLRYVGMVTIILNDYPVLKYVLVGIMGLFVLTSKES 183
[Close]
BLAST of mRNA_P-wetherbeei_contig1910.4.1 vs. uniprot
Match: D8LRQ0_ECTSI (Signal peptidase complex catalytic subunit SEC11C n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRQ0_ECTSI)

HSP 1 Score: 307 bits (786), Expect = 8.060e-102
Identity = 154/183 (84.15%), Postives = 169/183 (92.35%), Query Frame = 2 
Query:  110 MVELINQQVDELKKLWKNKRQLAFQGLNLAMIVLSALMIWKSLMVITKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEVVVFTIKGRDIPIVHRVMKVHEKADGVVELLTKGDNNRVNDRDLYAPGQLWLRREDILGRARGTLRYVGMVTIILNDYPLLKYVLVGIMGLFVLTNREA 658
            MV+ +++QVDELKKLW NKRQLAFQGLNLAMIVLSALMIWKSLMV+TKSESPVVVVLSGSMEPAFQRGDILFL+N D+P+R GEVVVF IK R+IPIVHRVM VHEK DG + +LTKGD+N+VNDR LY PGQ+WL REDILGRARGTLRYVGMVTIILNDYP LKYVLVG+MGLFVLTNREA
Sbjct:    1 MVDFVDKQVDELKKLWHNKRQLAFQGLNLAMIVLSALMIWKSLMVVTKSESPVVVVLSGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEKPDGSISVLTKGDSNKVNDRGLYVPGQMWLSREDILGRARGTLRYVGMVTIILNDYPPLKYVLVGLMGLFVLTNREA 183
[Close]
BLAST of mRNA_P-wetherbeei_contig1910.4.1 vs. uniprot
Match: A0A7S3M735_9STRA (Signal peptidase I n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M735_9STRA)

HSP 1 Score: 303 bits (777), Expect = 1.800e-100
Identity = 151/182 (82.97%), Postives = 166/182 (91.21%), Query Frame = 2 
Query:  113 VELINQQVDELKKLWKNKRQLAFQGLNLAMIVLSALMIWKSLMVITKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEVVVFTIKGRDIPIVHRVMKVHEKADGVVELLTKGDNNRVNDRDLYAPGQLWLRREDILGRARGTLRYVGMVTIILNDYPLLKYVLVGIMGLFVLTNREA 658
            +E +  QV E+KKLWKNKRQL  Q LNLAMIV SALMIWK LMV+TKSESPVVVVLSGSMEPAFQRGDILFL NQDDPIR GE+VVF IK RDIPIVHRVMKVHEK DG VE+LTKGDNNRV+DR LYAPGQLWL+REDILGRA+GTLRY+GMVTIILNDYP+LKYVL+GIMG+FVLTN+E+
Sbjct:    1 METVKNQVVEIKKLWKNKRQLTLQALNLAMIVFSALMIWKGLMVVTKSESPVVVVLSGSMEPAFQRGDILFLTNQDDPIRAGEIVVFKIKDRDIPIVHRVMKVHEKEDGSVEVLTKGDNNRVDDRGLYAPGQLWLQREDILGRAKGTLRYLGMVTIILNDYPVLKYVLIGIMGIFVLTNKES 182
[Close]
BLAST of mRNA_P-wetherbeei_contig1910.4.1 vs. uniprot
Match: A0A7S1U989_9STRA (Signal peptidase complex catalytic subunit SEC11C n=2 Tax=Pinguiochrysidaceae TaxID=1004268 RepID=A0A7S1U989_9STRA)

HSP 1 Score: 300 bits (767), Expect = 6.130e-99
Identity = 154/183 (84.15%), Postives = 164/183 (89.62%), Query Frame = 2 
Query:  110 MVELINQQVDELKKLWKNKRQLAFQGLNLAMIVLSALMIWKSLMVITKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEVVVFTIKGRDIPIVHRVMKVHEKADGVVELLTKGDNNRVNDRDLYAPGQLWLRREDILGRARGTLRYVGMVTIILNDYPLLKYVLVGIMGLFVLTNREA 658
            M E++  QV ELKKLW NKRQL FQ LNLAMIV SALMIWKSLMV+TKSESPVVVVLSGSMEPAFQRGDILFL+N D PIRVGE+VVF IK RDIPIVHRV KVHEK DG VELLTKGDNNRV+DR LYAPGQLWL REDILGRA GTLRYVGMVTIILND+P LKY+LVGIMGLFVLTN+E+
Sbjct:    1 MWEIVQMQVFELKKLWANKRQLLFQSLNLAMIVFSALMIWKSLMVLTKSESPVVVVLSGSMEPAFQRGDILFLSNHDSPIRVGEIVVFKIKDRDIPIVHRVTKVHEKPDGKVELLTKGDNNRVDDRGLYAPGQLWLNREDILGRAVGTLRYVGMVTIILNDFPALKYLLVGIMGLFVLTNKES 183
[Close]
BLAST of mRNA_P-wetherbeei_contig1910.4.1 vs. uniprot
Match: F0YAE9_AURAN (Signal peptidase I n=3 Tax=Pelagomonadales TaxID=54409 RepID=F0YAE9_AURAN)

HSP 1 Score: 298 bits (762), Expect = 5.140e-98
Identity = 156/192 (81.25%), Postives = 166/192 (86.46%), Query Frame = 2 
Query:  113 VELINQQVDELKKLWKNKRQLAFQGLNLAMIVLSALMIWKSLMVITKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEVVVFTIKGRDIPIVHRVMKVHEKADGVVELLTKGDNNRVNDRDLYAPGQLWLRREDILGRAR-----------GTLRYVGMVTIILNDYPLLKYVLVGIMGLFVLTNRE 655
            +E+++QQ+ ELKKLWKNKR L  QGLNLAMIV SALMIWK LM +TKSESPVVVVLSGSMEPAFQRGDILFLNNQD+PIRVGEVVVF IK RDIPIVHRVMKVHEKADG VELLTKGDNNRV+DR LYAPGQLWL RED+LGRA            GTLRYVGMVTIILNDYP LKYVLV IMGLFVLTN+E
Sbjct:    1 MEIVDQQIFELKKLWKNKRLLLHQGLNLAMIVFSALMIWKGLMFVTKSESPVVVVLSGSMEPAFQRGDILFLNNQDNPIRVGEVVVFKIKDRDIPIVHRVMKVHEKADGAVELLTKGDNNRVDDRGLYAPGQLWLAREDVLGRAIRGGNKMIQGAIGTLRYVGMVTIILNDYPALKYVLVSIMGLFVLTNKE 192
[Close]
BLAST of mRNA_P-wetherbeei_contig1910.4.1 vs. uniprot
Match: W7TFR1_9STRA (Signal peptidase I n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFR1_9STRA)

HSP 1 Score: 295 bits (756), Expect = 2.850e-97
Identity = 149/183 (81.42%), Postives = 163/183 (89.07%), Query Frame = 2 
Query:  110 MVELINQQVDELKKLWKNKRQLAFQGLNLAMIVLSALMIWKSLMVITKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEVVVFTIKGRDIPIVHRVMKVHEKADGVVELLTKGDNNRVNDRDLYAPGQLWLRREDILGRARGTLRYVGMVTIILNDYPLLKYVLVGIMGLFVLTNREA 658
            M E++  Q+ ELKKLW++ R L  Q LNLAMIV SALMIWK LM +TKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGE+VVF IK RDIPIVHRV++VH+K DG VELLTKGDNNRV DR LYAPGQLWL REDILGRA GTLRY+GMVTIILNDYP+LKYVLVGIMGLFVLTN+E+
Sbjct:    1 MEEIVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVHQKEDGKVELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAGTLRYLGMVTIILNDYPMLKYVLVGIMGLFVLTNKES 183
[Close]
BLAST of mRNA_P-wetherbeei_contig1910.4.1 vs. uniprot
Match: A0A7S2RVP6_9STRA (Signal peptidase complex catalytic subunit SEC11C n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVP6_9STRA)

HSP 1 Score: 293 bits (749), Expect = 3.060e-96
Identity = 151/181 (83.43%), Postives = 162/181 (89.50%), Query Frame = 2 
Query:  113 VELINQQVDELKKLWKNKRQLAFQGLNLAMIVLSALMIWKSLMVITKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEVVVFTIKGRDIPIVHRVMKVHEKADGVVELLTKGDNNRVNDRDLYAPGQLWLRREDILGRARGTLRYVGMVTIILNDYPLLKYVLVGIMGLFVLTNRE 655
            +E+I+ Q+ ELKKLW+NKRQ  FQ LNLAMIV SALMIWK LM ITKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEVVVF IK RDIPIVHRV+KVHEK DG VELLTKGDNNRV+DR LYA GQ ++ REDILGRA GTLRYVGMVTIILNDYP LKYVLV +MGLFVLTN+E
Sbjct:    1 MEMIDAQISELKKLWRNKRQFLFQALNLAMIVFSALMIWKGLMFITKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEVVVFKIKDRDIPIVHRVLKVHEKPDGRVELLTKGDNNRVDDRGLYALGQQFIGREDILGRAVGTLRYVGMVTIILNDYPALKYVLVAVMGLFVLTNKE 181
[Close]
BLAST of mRNA_P-wetherbeei_contig1910.4.1 vs. uniprot
Match: A0A6U5HKR9_9STRA (Signal peptidase I n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5HKR9_9STRA)

HSP 1 Score: 283 bits (724), Expect = 2.020e-92
Identity = 143/182 (78.57%), Postives = 161/182 (88.46%), Query Frame = 2 
Query:  110 MVELINQQVDELKKLWKNKRQLAFQGLNLAMIVLSALMIWKSLMVITKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEVVVFTIKGRDIPIVHRVMKVHEKADGVVELLTKGDNNRVNDRDLYAPGQLWLRREDILGRARGTLRYVGMVTIILNDYPLLKYVLVGIMGLFVLTNRE 655
            M ++I++Q+ ELKKLW NKRQLAFQ LNLAMIV SALMIWK LM +TKSESPVVVVLSGSMEPAFQRGDILFL+N +  + VG+VVVF I+ RDIPIVHR++K H KADG VELLTKGDNNRV+DR LYAPGQLWL REDILGRA G LRYVGMVTI LNDYP+LKYVLVG+MGLFVLT++E
Sbjct:    1 MKDIIDKQIVELKKLWLNKRQLAFQALNLAMIVFSALMIWKGLMCVTKSESPVVVVLSGSMEPAFQRGDILFLDNSNPEVAVGDVVVFKIRDRDIPIVHRILKAHRKADGKVELLTKGDNNRVDDRGLYAPGQLWLEREDILGRAVGCLRYVGMVTIALNDYPVLKYVLVGMMGLFVLTSKE 182
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1910.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4U9_9STRA1.090e-10687.91Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A7S0SWE0_9STRA3.360e-10384.62Signal peptidase I n=1 Tax=Chromulina nebulosa Tax... [more]
A0A6V1QND9_HETAK5.680e-10286.34Signal peptidase complex catalytic subunit SEC11C ... [more]
D8LRQ0_ECTSI8.060e-10284.15Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A7S3M735_9STRA1.800e-10082.97Signal peptidase I n=1 Tax=Spumella elongata TaxID... [more]
A0A7S1U989_9STRA6.130e-9984.15Signal peptidase complex catalytic subunit SEC11C ... [more]
F0YAE9_AURAN5.140e-9881.25Signal peptidase I n=3 Tax=Pelagomonadales TaxID=5... [more]
W7TFR1_9STRA2.850e-9781.42Signal peptidase I n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A7S2RVP6_9STRA3.060e-9683.43Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A6U5HKR9_9STRA2.020e-9278.57Signal peptidase I n=1 Tax=Corethron hystrix TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1910contigP-wetherbeei_contig1910:3781..5487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRQ0
Preferred nameSEC11C
PFAMsPeptidase_S24
Model size1093
Max annot lvl2759|Eukaryota
KEGG koko:K10686,ko:K13280
KEGG Pathwayko03060,ko04120,map03060,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005787,GO:0005789,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016485,GO:0016787,GO:0019538,GO:0031090,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0098796,GO:0098827,GO:0140096,GO:1901564,GO:1902494,GO:1905368
Exons3
Evalue6.38e-105
EggNOG OGsCOG0681@1|root,KOG3342@2759|Eukaryota
Ec32 ortholog descriptionSec11 homolog, catalytic subunit of the Signal Peptidase Complex
Ec32 orthologEc-12_000620.1
EC3.4.21.89,6.2.1.45
Descriptionsignal peptide processing
Cds size552
COG categoryU
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186163.9423018-UTR-P-wetherbeei_contig1910:3780..38891683186163.9423018-UTR-P-wetherbeei_contig1910:3780..3889Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1910 3781..3889 +
1683186163.982047-UTR-P-wetherbeei_contig1910:5055..54871683186163.982047-UTR-P-wetherbeei_contig1910:5055..5487Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1910 5056..5487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186163.9553502-CDS-P-wetherbeei_contig1910:3889..40621683186163.9553502-CDS-P-wetherbeei_contig1910:3889..4062Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1910 3890..4062 +
1683186163.964065-CDS-P-wetherbeei_contig1910:4183..43301683186163.964065-CDS-P-wetherbeei_contig1910:4183..4330Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1910 4184..4330 +
1683186163.9729314-CDS-P-wetherbeei_contig1910:4823..50551683186163.9729314-CDS-P-wetherbeei_contig1910:4823..5055Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1910 4824..5055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1910.4.1prot_P-wetherbeei_contig1910.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1910 3890..5055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1910.4.1

>prot_P-wetherbeei_contig1910.4.1 ID=prot_P-wetherbeei_contig1910.4.1|Name=mRNA_P-wetherbeei_contig1910.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=184bp
MVELINQQVDELKKLWKNKRQLAFQGLNLAMIVLSALMIWKSLMVITKSE
SPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEVVVFTIKGRDIPIVHR
VMKVHEKADGVVELLTKGDNNRVNDRDLYAPGQLWLRREDILGRARGTLR
YVGMVTIILNDYPLLKYVLVGIMGLFVLTNREA*
back to top

mRNA from alignment at P-wetherbeei_contig1910:3781..5487+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1910.4.1 ID=mRNA_P-wetherbeei_contig1910.4.1|Name=mRNA_P-wetherbeei_contig1910.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1707bp|location=Sequence derived from alignment at P-wetherbeei_contig1910:3781..5487+ (Phaeothamnion wetherbeei SAG_119_79)
GTGTGGGTAGAAGATTGTTGTGTTTGGGCCAGCCGTCGTCGCGTCTCTTT
CTCTTGTGGGCCAAATATCTTGCAGTAAGGCTCGAGCAAGCGGTTCTCGT
TTCGAAACCATGGTGGAGCTTATCAACCAGCAGGTGGATGAGCTGAAGAA
GCTCTGGAAGAACAAGCGGCAGCTCGCCTTTCAGGGCCTCAACCTTGCCA
TGATCGTATTATCAGCCCTTATGATCTGGAAGAGCCTCATGGTGATCACA
AAATCAGAGAGCCCCGTCGTCGTCGTGCTCAGGTGCGGCCGTGTGGCAAC
AAGTTCTAGTCAGTTGCCAACTCCTTTCATCGTTTTTTGCTTAACTCTCC
CCTCGTTTCGTCTCGCTCTTCTTTGTTATCACGGAACGGGCATCGTTTTG
CAGCGGATCGATGGAGCCAGCGTTTCAACGGGGCGACATCTTGTTCCTGA
ACAACCAGGACGACCCGATCCGCGTGGGAGAGGTGGTAGTTTTCACCATC
AAGGGAAGAGACATCCCCATCGTGCACAGAGTCATGAAGGTCCACGAAAA
GTGAGTCCCACTCTATCCCAACCTCGGCCATCTTTCTTTCCAATCATAGA
GCTCTAGTGGTCCTGCGGTCATTTTTTGCCTTTTTTTCTCGGCCATATAA
GTTACTCGCGACCTGGCGCCGCCTCTCGCTTCCGTTTTATCGCTCGTTTC
GCCCATGGTTTGCCAGTTGGCACCGCCTCATACCTCCGCCCTCTGTCCTG
CGGGGCCTGGCTGTGAGTGGCTTATATTTCAGTCCTTCCGCTGCTCTCTG
TAAGTAAGTTGTTGCCTGAACTCAATCAACTGTCGGTCCTTTCACGACCA
TTGACCCATTGGCAATTGCATCGCCGTCCTTCCGTTGGCGACGGCTGCGG
TTGCGGCGATGATGGCGGCGATGACGGCGGCTACTGCTCGCTGCGCCGAC
GGCGGCAACTGTGGCGGCGACGGTGGCAATGCGGCAACAATGGCAACGGC
GGCGGCAATGGAAATTGCGGCAACGGTGGCTCTTTTTCGGCAGGGCGGAC
GGGGTGGTGGAGCTGCTGACGAAGGGCGACAACAACCGCGTCAATGATAG
GGACCTCTACGCGCCGGGACAGCTCTGGTTGCGACGCGAGGACATCCTGG
GGCGAGCGCGGGGCACGTTGCGGTATGTTGGCATGGTCACCATCATCTTG
AACGACTACCCGCTGCTGAAATACGTGCTCGTAGGCATCATGGGACTCTT
CGTGCTCACAAACAGGGAAGCGTAGCGCCGGTGAAACGCACCTCCTGCCG
CGAGCGTGATCCGGCGGTTGACACCGCCGGCCGAACTGCTGCCACCGGTG
CCACCGGCAGCCACCAGTGCACTGGCTAGCGCTGGCAACGATGTGAATGC
TGGTGCCGGCCATGGCGTGACCGCCACAGCGCCGGCACTGGCACCATCGG
TGGTGTTGATGTGGGACCAGACAGGGTGGCAGGGAGAGGCGTGGAGGTGC
GCATACAGCAGCGGTGGGATCCGCCGGCAGTATCCCAGTGGCTGCAGGCG
TGGCGCTGCAATTCCGCTTTTGCGAACCAAATCTTGCACCAACAACCGGC
CAATTCATTGCAAGCTGCAGTGGCTCTATGGATCCAGTACCAGCCATTGG
TTATGCCTCGCAATTTTGTGCAGATCATTCCAGCACAACGAAAGAGATAA
CTCCATG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1910:3781..5487+

>mRNA_P-wetherbeei_contig1910.4.1 ID=mRNA_P-wetherbeei_contig1910.4.1|Name=mRNA_P-wetherbeei_contig1910.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig1910:3781..5487+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGAGCTTATCAACCAGCAGGTGGATGAGCTGAAGAAGCTCTGGAA
GAACAAGCGGCAGCTCGCCTTTCAGGGCCTCAACCTTGCCATGATCGTAT
TATCAGCCCTTATGATCTGGAAGAGCCTCATGGTGATCACAAAATCAGAG
AGCCCCGTCGTCGTCGTGCTCAGCGGATCGATGGAGCCAGCGTTTCAACG
GGGCGACATCTTGTTCCTGAACAACCAGGACGACCCGATCCGCGTGGGAG
AGGTGGTAGTTTTCACCATCAAGGGAAGAGACATCCCCATCGTGCACAGA
GTCATGAAGGTCCACGAAAAGGCGGACGGGGTGGTGGAGCTGCTGACGAA
GGGCGACAACAACCGCGTCAATGATAGGGACCTCTACGCGCCGGGACAGC
TCTGGTTGCGACGCGAGGACATCCTGGGGCGAGCGCGGGGCACGTTGCGG
TATGTTGGCATGGTCACCATCATCTTGAACGACTACCCGCTGCTGAAATA
CGTGCTCGTAGGCATCATGGGACTCTTCGTGCTCACAAACAGGGAAGCGT
AG
back to top