mRNA_P-wetherbeei_contig1910.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1910.1.1
Unique NamemRNA_P-wetherbeei_contig1910.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1910.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1910contigP-wetherbeei_contig1910:1..581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FIX3
PFAMsPPR
Model size273
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.03e-07
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Descriptionendonuclease activity
Cds size273
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186163.90499-CDS-P-wetherbeei_contig1910:0..651683186163.90499-CDS-P-wetherbeei_contig1910:0..65Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1910 1..65 -
1683186163.9146445-CDS-P-wetherbeei_contig1910:373..5811683186163.9146445-CDS-P-wetherbeei_contig1910:373..581Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1910 374..581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1910.1.1prot_P-wetherbeei_contig1910.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1910 1..581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1910.1.1

>prot_P-wetherbeei_contig1910.1.1 ID=prot_P-wetherbeei_contig1910.1.1|Name=mRNA_P-wetherbeei_contig1910.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
IHSCEKVGDWQRAVTLLEEMRAEHGLMPDQYTYAGAISACGKGGQVDRAL
ALLVRMRGEGVEPNLHCYNAAINACRLAGRWEKAAAMLDVM
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mRNA from alignment at P-wetherbeei_contig1910:1..581-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1910.1.1 ID=mRNA_P-wetherbeei_contig1910.1.1|Name=mRNA_P-wetherbeei_contig1910.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=581bp|location=Sequence derived from alignment at P-wetherbeei_contig1910:1..581- (Phaeothamnion wetherbeei SAG_119_79)
ATCCACAGCTGCGAGAAGGTGGGGGACTGGCAGCGGGCGGTGACGCTGCT
GGAGGAGATGCGGGCGGAGCACGGACTCATGCCGGACCAGTACACGTACG
CCGGCGCCATCTCGGCCTGCGGTAAGGGCGGCCAGGTCGACCGAGCACTC
GCGCTGCTCGTGCGCATGCGTGGGGAGGGCGTAGAGCCAAACCTCCACTG
CTACAACGGTGAGTATGCGGGACGAGTTGGCCGGGCGGCAGATTGGGGTG
AAGGAGGGTTGGGTGTTTCGGTGTGAAGTTTCGGGTCTGTAGGCTCGGGA
TGCGTGGTGTGTGTAATTTGGTGGTACAGATTCGTTTTTGGAGGACTCAG
CTAGGCGGCTTTTACGTATTCCGGTACAGATTACTTGTGCTGTACGGGGT
GCTAGTTCGGTGGTATATTAAGAAATGGTTGAAGGTTGTCCCGTCTGTAT
TTTGGGGGGGAAGCTGGCTTAGCTTATTGGTCAATGCGCTCTTCCATTGG
GTCGCCGTATCTGCAGCGGCCATCAACGCGTGCCGGCTGGCCGGGCGATG
GGAGAAGGCGGCGGCAATGCTGGACGTCATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1910:1..581-

>mRNA_P-wetherbeei_contig1910.1.1 ID=mRNA_P-wetherbeei_contig1910.1.1|Name=mRNA_P-wetherbeei_contig1910.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig1910:1..581- (Phaeothamnion wetherbeei SAG_119_79)
ATCCACAGCTGCGAGAAGGTGGGGGACTGGCAGCGGGCGGTGACGCTGCT
GGAGGAGATGCGGGCGGAGCACGGACTCATGCCGGACCAGTACACGTACG
CCGGCGCCATCTCGGCCTGCGGTAAGGGCGGCCAGGTCGACCGAGCACTC
GCGCTGCTCGTGCGCATGCGTGGGGAGGGCGTAGAGCCAAACCTCCACTG
CTACAACGCGGCCATCAACGCGTGCCGGCTGGCCGGGCGATGGGAGAAGG
CGGCGGCAATGCTGGACGTCATG
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