mRNA_P-wetherbeei_contig1910.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1910.2.1
Unique NamemRNA_P-wetherbeei_contig1910.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1910.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1910contigP-wetherbeei_contig1910:798..1133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4565.Traes_7AL_CCB5CDCCA.1
PFAMsPPR,PPR_2,PPR_3
Model size336
Max annot lvl35493|Streptophyta
KEGG koko:K17964
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009451,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016070,GO:0016787,GO:0016788,GO:0022414,GO:0032501,GO:0032502,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363
Exons1
Evalue0.000608
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota,37HND@33090|Viridiplantae,3GFYI@35493|Streptophyta,3KKXU@4447|Liliopsida,3IAVN@38820|Poales
DescriptionPPR repeat family
Cds size315
COG categoryJ
BRITEko00000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186163.8538156-CDS-P-wetherbeei_contig1910:797..11121683186163.8538156-CDS-P-wetherbeei_contig1910:797..1112Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1910 798..1112 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186163.87399-UTR-P-wetherbeei_contig1910:1112..11331683186163.87399-UTR-P-wetherbeei_contig1910:1112..1133Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1910 1113..1133 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1910.2.1prot_P-wetherbeei_contig1910.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1910 798..1112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1910.2.1

>prot_P-wetherbeei_contig1910.2.1 ID=prot_P-wetherbeei_contig1910.2.1|Name=mRNA_P-wetherbeei_contig1910.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
MIHILSQKKTGGGGGDGGVAADRRSQAEEAAALLAEAKASGRRLTAVTHN
QVITLLGKAGQLERATELFRDMVAIGTTPTVTTYNSLISRRELIREGEKL
PLKR*
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mRNA from alignment at P-wetherbeei_contig1910:798..1133-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1910.2.1 ID=mRNA_P-wetherbeei_contig1910.2.1|Name=mRNA_P-wetherbeei_contig1910.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig1910:798..1133- (Phaeothamnion wetherbeei SAG_119_79)
ACCGGCGGGCTTTATCGCACCATGATCCACATCCTCTCCCAGAAGAAGAC
CGGTGGCGGCGGCGGGGACGGCGGGGTGGCGGCGGACCGGAGGAGCCAGG
CAGAGGAGGCGGCGGCGCTGTTGGCAGAGGCGAAGGCGTCGGGACGGCGG
CTGACGGCGGTGACGCACAACCAGGTCATCACGCTGCTGGGCAAGGCCGG
GCAGCTGGAGCGGGCGACGGAGCTGTTCCGGGACATGGTGGCCATCGGGA
CAACCCCGACCGTCACCACCTACAACAGCCTCATCAGCAGGCGAGAACTG
ATCAGAGAGGGTGAAAAGCTTCCTTTAAAAAGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1910:798..1133-

>mRNA_P-wetherbeei_contig1910.2.1 ID=mRNA_P-wetherbeei_contig1910.2.1|Name=mRNA_P-wetherbeei_contig1910.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig1910:798..1133- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCCACATCCTCTCCCAGAAGAAGACCGGTGGCGGCGGCGGGGACGG
CGGGGTGGCGGCGGACCGGAGGAGCCAGGCAGAGGAGGCGGCGGCGCTGT
TGGCAGAGGCGAAGGCGTCGGGACGGCGGCTGACGGCGGTGACGCACAAC
CAGGTCATCACGCTGCTGGGCAAGGCCGGGCAGCTGGAGCGGGCGACGGA
GCTGTTCCGGGACATGGTGGCCATCGGGACAACCCCGACCGTCACCACCT
ACAACAGCCTCATCAGCAGGCGAGAACTGATCAGAGAGGGTGAAAAGCTT
CCTTTAAAAAGATGA
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