mRNA_P-wetherbeei_contig19092.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19092.1.1
Unique NamemRNA_P-wetherbeei_contig19092.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19092.1.1 vs. uniprot
Match: A0A833LP11_9HYPH (2-oxoglutarate dehydrogenase E1 component n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833LP11_9HYPH)

HSP 1 Score: 201 bits (512), Expect = 9.560e-58
Identity = 105/163 (64.42%), Postives = 114/163 (69.94%), Query Frame = 1
Query:    1 SFLYGGNAAYIEDLYARYEVDPNSVDAEWQVFFRSLKDERAEVIKNSTGPSWKRPNL-------------------------------------ISAADVQQATRDSIHALMLIRAYRIRGHFHAKLDPLGLEPEKSEEELDPRSYGFTDADMDRKIFLDKVL 378
            SFLYGGNAAY+EDLYARYE DP SVDAEWQ FFRSLKD+ A V +N+ G SWKRPN                                      +S+ DVQQATRDS+HALMLIRAYRIRGHFHA LDPL LEPEK+EEELDPRSYGFT+ADMDRKIFLDKVL
Sbjct:   14 SFLYGGNAAYVEDLYARYETDPKSVDAEWQAFFRSLKDDPAVVAENARGASWKRPNWPLRPNGELVAALDSDWSGIEKAVGDKIKAKAQVRGVELSSTDVQQATRDSLHALMLIRAYRIRGHFHATLDPLDLEPEKNEEELDPRSYGFTEADMDRKIFLDKVL 176          
BLAST of mRNA_P-wetherbeei_contig19092.1.1 vs. uniprot
Match: A0A140GVD7_9HYPH (2-oxoglutarate dehydrogenase E1 component n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A140GVD7_9HYPH)

HSP 1 Score: 197 bits (502), Expect = 2.270e-56
Identity = 104/161 (64.60%), Postives = 114/161 (70.81%), Query Frame = 1
Query:    1 SFLYGGNAAYIEDLYARYEVDPNSVDAEWQVFFRSLKDERAEVIKNSTGPSWKRPNL-----------------------------------ISAADVQQATRDSIHALMLIRAYRIRGHFHAKLDPLGLEPEKSEEELDPRSYGFTDADMDRKIFLDKVL 378
            SFLYGGNAAY+E L +RYE +P SVDAEW+ FF SLKDER +V KN++GPSW+RP                                     ISAADVQQATRDSI ALMLIRAYRIRGHFHAKLDPLGLEPEKSEEELDPRSYGFT+AD DRKIF+DKVL
Sbjct:   14 SFLYGGNAAYVEQLQSRYEANPASVDAEWRAFFESLKDEREDVRKNASGPSWQRPITHANGELVAALTGDWAEVEKTIGDKVKAKAQSKGVEISAADVQQATRDSIRALMLIRAYRIRGHFHAKLDPLGLEPEKSEEELDPRSYGFTEADFDRKIFIDKVL 174          
BLAST of mRNA_P-wetherbeei_contig19092.1.1 vs. uniprot
Match: A0A833G4G1_9HYPH (Oxoglutarate dehydrogenase (succinyl-transferring) (Fragment) n=1 Tax=Bauldia sp. TaxID=2575872 RepID=A0A833G4G1_9HYPH)

HSP 1 Score: 186 bits (472), Expect = 2.970e-54
Identity = 101/163 (61.96%), Postives = 109/163 (66.87%), Query Frame = 1
Query:    1 SFLYGGNAAYIEDLYARYEVDPNSVDAEWQVFFRSLKDERAEVIKNSTGPSWKRPN--------LISA-----------------------------ADVQQATRDSIHALMLIRAYRIRGHFHAKLDPLGLEPEKSEEELDPRSYGFTDADMDRKIFLDKVL 378
            SFLYGGNAAYIEDLYARYE DP +VDAEWQ FF SLKD  A+V K++ G SWKRP+        L+SA                             ADVQQATRDS+ ALMLIRAYRIRGHFHA LDPLGLE  K  EELDPRSYGFTDAD DR+IFLD VL
Sbjct:   14 SFLYGGNAAYIEDLYARYESDPTAVDAEWQAFFASLKDSAADVAKSARGASWKRPSWPQPARDELVSALDGQWGEVARTVGDKLKAKAQAVGVELAGADVQQATRDSVRALMLIRAYRIRGHFHANLDPLGLEAPKDHEELDPRSYGFTDADYDRRIFLDHVL 176          
BLAST of mRNA_P-wetherbeei_contig19092.1.1 vs. uniprot
Match: A0A537L1W1_9PROT (2-oxoglutarate dehydrogenase E1 component n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537L1W1_9PROT)

HSP 1 Score: 189 bits (481), Expect = 1.720e-53
Identity = 99/161 (61.49%), Postives = 111/161 (68.94%), Query Frame = 1
Query:    1 SFLYGGNAAYIEDLYARYEVDPNSVDAEWQVFFRSLKDERAEVIKNSTGPSWKRPNLI-----------------------------------SAADVQQATRDSIHALMLIRAYRIRGHFHAKLDPLGLEPEKSEEELDPRSYGFTDADMDRKIFLDKVL 378
            SFLYGGNAAYIEDLY+RYE DPNSVDA W+ FF SLKD+ A+V +++ G SWK+P L+                                   +AADVQQATRDSIHALMLIRAYRIRGHFHA LDPLGLE  K +EELDPRSYGF DAD+DRKIFLD VL
Sbjct:   14 SFLYGGNAAYIEDLYSRYEADPNSVDAAWREFFASLKDQSADVTRSARGASWKKPPLVERNELLSALDGQWADAEKKLGDSVRAKAQGAGVELTAADVQQATRDSIHALMLIRAYRIRGHFHANLDPLGLEGSKDDEELDPRSYGFGDADLDRKIFLDHVL 174          
BLAST of mRNA_P-wetherbeei_contig19092.1.1 vs. uniprot
Match: A0A1W6ZNH2_9HYPH (2-oxoglutarate dehydrogenase E1 component n=1 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W6ZNH2_9HYPH)

HSP 1 Score: 186 bits (472), Expect = 2.940e-52
Identity = 97/163 (59.51%), Postives = 110/163 (67.48%), Query Frame = 1
Query:    1 SFLYGGNAAYIEDLYARYEVDPNSVDAEWQVFFRSLKDERAEVIKNSTGPSWKRPNL-------------------------------------ISAADVQQATRDSIHALMLIRAYRIRGHFHAKLDPLGLEPEKSEEELDPRSYGFTDADMDRKIFLDKVL 378
            SFLYGGNAAYIEDLYA+YE DP SVDAEWQ FF+SLKD+ A V K++ G SWK+P                                       +S  DV QATRDS+HALMLIRAYRIRGHFHAKLDPL LEPE+ E ELDP++YGFT+ADMDRKI+LDKVL
Sbjct:   14 SFLYGGNAAYIEDLYAKYEADPASVDAEWQSFFQSLKDDPASVTKSAEGASWKKPGWPQIGNGELIAALDGNWAETEKALGDKIKGKAQARGVELSTTDVLQATRDSLHALMLIRAYRIRGHFHAKLDPLELEPERDEAELDPKTYGFTEADMDRKIYLDKVL 176          
BLAST of mRNA_P-wetherbeei_contig19092.1.1 vs. uniprot
Match: A0A346A0B4_9HYPH (2-oxoglutarate dehydrogenase E1 component n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A346A0B4_9HYPH)

HSP 1 Score: 184 bits (468), Expect = 1.030e-51
Identity = 95/163 (58.28%), Postives = 111/163 (68.10%), Query Frame = 1
Query:    1 SFLYGGNAAYIEDLYARYEVDPNSVDAEWQVFFRSLKDERAEVIKNSTGPSWKRPNL-------------------------------------ISAADVQQATRDSIHALMLIRAYRIRGHFHAKLDPLGLEPEKSEEELDPRSYGFTDADMDRKIFLDKVL 378
            SFLYGGNAAYIEDLYA+YE DP  VDAEW+ FF+SLKD+RA V+K++ G SWK+PN                                      + +ADV QATRDS+ ALMLIRAYRIRGHFHAKLDPLG++ E +EEEL+P SYGFT+ DMDRKIFLDKVL
Sbjct:   14 SFLYGGNAAYIEDLYAKYEADPAKVDAEWRDFFQSLKDDRANVVKSAEGASWKQPNWPVRPSGDLVWALDANWAETEKKLGEKISAKAQAKGVELGSADVMQATRDSLRALMLIRAYRIRGHFHAKLDPLGIQAEPNEEELEPASYGFTETDMDRKIFLDKVL 176          
BLAST of mRNA_P-wetherbeei_contig19092.1.1 vs. uniprot
Match: A0A4D7B713_9HYPH (2-oxoglutarate dehydrogenase E1 component n=3 Tax=Bacteria TaxID=2 RepID=A0A4D7B713_9HYPH)

HSP 1 Score: 182 bits (463), Expect = 4.990e-51
Identity = 97/167 (58.08%), Postives = 109/167 (65.27%), Query Frame = 1
Query:    1 SFLYGGNAAYIEDLYARYEVDPNSVDAEWQVFFRSLKDERAEVIKNSTGPSWKRPN--------LISA---------------------------------ADVQQATRDSIHALMLIRAYRIRGHFHAKLDPLGLEPEKSEEELDPRSYGFTDADMDRKIFLDKVL 378
            SFLYGGNAAYIEDLYARYE +P SVDAEWQ FF+SL D+  +V KN+ GPSW +PN        LISA                                  D+QQATRDS+ ALMLIRAYR RGH HA LDPLGL+P K+ EELDPRSYGFT+AD DRKIF+DKVL
Sbjct:   12 SFLYGGNAAYIEDLYARYEANPASVDAEWQAFFKSLGDDAGDVAKNAEGPSWAKPNWPIAANGELISALDGNWAAIEKVIGDKLKARAADTAAPKGAPVAETDIQQATRDSVRALMLIRAYRARGHLHANLDPLGLDPPKTHEELDPRSYGFTEADYDRKIFIDKVL 178          
BLAST of mRNA_P-wetherbeei_contig19092.1.1 vs. uniprot
Match: A0A2S0N7A1_9HYPH (2-oxoglutarate dehydrogenase E1 component n=3 Tax=Phreatobacter TaxID=1632780 RepID=A0A2S0N7A1_9HYPH)

HSP 1 Score: 181 bits (460), Expect = 1.270e-50
Identity = 95/165 (57.58%), Postives = 110/165 (66.67%), Query Frame = 1
Query:    1 SFLYGGNAAYIEDLYARYEVDPNSVDAEWQVFFRSLKDERAEVIKNSTGPSWKRPN--------LISAAD-------------------------------VQQATRDSIHALMLIRAYRIRGHFHAKLDPLGLEPEKSEEELDPRSYGFTDADMDRKIFLDKVL 378
            SFLYGGNAAYIEDLYARYE DP SVDA+WQ FF SL D+  +V+K++ GPSW +PN        LISA D                               VQQATRDS+ ALMLIRAYR+RGH HA LDP+GL+P K+ EELDP+SYGFT+AD DRKIF+DKVL
Sbjct:   12 SFLYGGNAAYIEDLYARYEADPASVDAQWQAFFSSLGDDAKDVVKSAEGPSWSKPNWPIAANGELISAMDGNWAQVEKAIGDKLKAKAADKGRGAEITAEQVQQATRDSVRALMLIRAYRMRGHLHANLDPIGLDPPKTHEELDPKSYGFTEADYDRKIFIDKVL 176          
BLAST of mRNA_P-wetherbeei_contig19092.1.1 vs. uniprot
Match: A0A6I1JHU8_9HYPH (2-oxoglutarate dehydrogenase E1 component n=1 Tax=Xanthobacteraceae bacterium TaxID=2021379 RepID=A0A6I1JHU8_9HYPH)

HSP 1 Score: 181 bits (460), Expect = 1.290e-50
Identity = 96/165 (58.18%), Postives = 110/165 (66.67%), Query Frame = 1
Query:    1 SFLYGGNAAYIEDLYARYEVDPNSVDAEWQVFFRSLKDERAEVIKNSTGPSWKRPN--------LISAAD-------------------------------VQQATRDSIHALMLIRAYRIRGHFHAKLDPLGLEPEKSEEELDPRSYGFTDADMDRKIFLDKVL 378
            SFLYGGNAAYIEDLYARYE DP SVDA+WQ FF SL D+R +V+KN++GPSW + N        LISA D                               VQQATRDS+ ALMLIRAYR+RGH HA LDP+GL+P K+ EELDP SYGFT+AD DRKIF+DKVL
Sbjct:   12 SFLYGGNAAYIEDLYARYEADPASVDAQWQAFFSSLGDDRKDVVKNASGPSWTQANWPVTPGGELISALDGNWAAVEKAIGDKLKAKAADKGKGAEITAEQVQQATRDSVRALMLIRAYRMRGHLHANLDPIGLDPPKTHEELDPTSYGFTEADYDRKIFIDKVL 176          
BLAST of mRNA_P-wetherbeei_contig19092.1.1 vs. uniprot
Match: A0A1Q4C7J7_9HYPH (2-oxoglutarate dehydrogenase E1 component n=1 Tax=Rhizobiales bacterium 62-47 TaxID=1895811 RepID=A0A1Q4C7J7_9HYPH)

HSP 1 Score: 181 bits (459), Expect = 1.740e-50
Identity = 94/163 (57.67%), Postives = 108/163 (66.26%), Query Frame = 1
Query:    1 SFLYGGNAAYIEDLYARYEVDPNSVDAEWQVFFRSLKDERAEVIKNSTGPSWKRPNL-------------------------------------ISAADVQQATRDSIHALMLIRAYRIRGHFHAKLDPLGLEPEKSEEELDPRSYGFTDADMDRKIFLDKVL 378
            SFLYG NA+YI+D+YARYE DP+SVDAEW+ FF SLKD+ A+V KN+ GPSW+R N                                      ++  DV QATRDS+ ALMLIRAYR+RGHFHAKLDPLGLEP K  EELDPR+YGFTDAD DRKIFLD VL
Sbjct:   14 SFLYGANASYIDDIYARYEKDPSSVDAEWREFFGSLKDQPADVRKNAEGPSWERANWPQTPKDELTSALDGNWVQVEKAVGDKLQAKAKAAGTELAGVDVHQATRDSVRALMLIRAYRMRGHFHAKLDPLGLEPAKDHEELDPRTYGFTDADFDRKIFLDHVL 176          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19092.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A833LP11_9HYPH9.560e-5864.422-oxoglutarate dehydrogenase E1 component n=1 Tax=... [more]
A0A140GVD7_9HYPH2.270e-5664.602-oxoglutarate dehydrogenase E1 component n=1 Tax=... [more]
A0A833G4G1_9HYPH2.970e-5461.96Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A537L1W1_9PROT1.720e-5361.492-oxoglutarate dehydrogenase E1 component n=1 Tax=... [more]
A0A1W6ZNH2_9HYPH2.940e-5259.512-oxoglutarate dehydrogenase E1 component n=1 Tax=... [more]
A0A346A0B4_9HYPH1.030e-5158.282-oxoglutarate dehydrogenase E1 component n=1 Tax=... [more]
A0A4D7B713_9HYPH4.990e-5158.082-oxoglutarate dehydrogenase E1 component n=3 Tax=... [more]
A0A2S0N7A1_9HYPH1.270e-5057.582-oxoglutarate dehydrogenase E1 component n=3 Tax=... [more]
A0A6I1JHU8_9HYPH1.290e-5058.182-oxoglutarate dehydrogenase E1 component n=1 Tax=... [more]
A0A1Q4C7J7_9HYPH1.740e-5057.672-oxoglutarate dehydrogenase E1 component n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19092contigP-wetherbeei_contig19092:73..558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1429916.X566_08215
Preferred namesucA
PFAMs2-oxogl_dehyd_N,E1_dh,OxoGdeHyase_C,Transket_pyr
Model size378
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00004,RC00027,RC00627,RC02743,RC02833,RC02883
KEGG koko:K00164
KEGG ReactionR00621,R01933,R01940,R03316,R08549
KEGG Pathwayko00020,ko00310,ko00380,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map00380,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011,M00032
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.99e-51
EggNOG OGsCOG0567@1|root,COG0567@2|Bacteria,1MVBF@1224|Proteobacteria,2TRBQ@28211|Alphaproteobacteria,3JRD5@41294|Bradyrhizobiaceae
EC1.2.4.2
DescriptionE1 component
Cds size378
COG categoryC
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186163.7849748-CDS-P-wetherbeei_contig19092:72..2791683186163.7849748-CDS-P-wetherbeei_contig19092:72..279Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19092 73..279 -
1683186163.7968109-CDS-P-wetherbeei_contig19092:387..5581683186163.7968109-CDS-P-wetherbeei_contig19092:387..558Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19092 388..558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19092.1.1prot_P-wetherbeei_contig19092.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19092 73..558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19092.1.1

>prot_P-wetherbeei_contig19092.1.1 ID=prot_P-wetherbeei_contig19092.1.1|Name=mRNA_P-wetherbeei_contig19092.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
SFLYGGNAAYIEDLYARYEVDPNSVDAEWQVFFRSLKDERAEVIKNSTGP
SWKRPNLISAADVQQATRDSIHALMLIRAYRIRGHFHAKLDPLGLEPEKS
EEELDPRSYGFTDADMDRKIFLDKVL
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mRNA from alignment at P-wetherbeei_contig19092:73..558-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19092.1.1 ID=mRNA_P-wetherbeei_contig19092.1.1|Name=mRNA_P-wetherbeei_contig19092.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig19092:73..558- (Phaeothamnion wetherbeei SAG_119_79)
TCATTCCTGTATGGCGGCAACGCCGCCTATATCGAAGACCTCTACGCGCG CTACGAGGTCGACCCCAATTCGGTCGATGCCGAATGGCAGGTGTTCTTCA GAAGCCTGAAGGACGAACGCGCCGAAGTCATCAAGAACTCGACCGGCCCG TCGTGGAAGCGGCCCAATCTCGTTCACGCCGGCGGCGAGATGATCGCGGC GCTGACGAGCGACTGGAGCGAGGTCGAAAAGTCCGTCGGCGACAAGATCA AGTCCAAGGCGCAATCGCGCGGCGTCGAGATTTCCGCCGCCGACGTGCAG CAGGCAACGCGCGATTCGATCCACGCACTGATGCTCATTCGCGCCTACCG CATCCGCGGCCACTTCCACGCCAAGCTCGATCCGCTGGGCTTGGAGCCCG AGAAGAGCGAGGAGGAGCTCGATCCGCGCTCCTACGGCTTCACCGACGCG GACATGGACCGCAAGATCTTCCTCGACAAGGTGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19092:73..558-

>mRNA_P-wetherbeei_contig19092.1.1 ID=mRNA_P-wetherbeei_contig19092.1.1|Name=mRNA_P-wetherbeei_contig19092.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig19092:73..558- (Phaeothamnion wetherbeei SAG_119_79)
TCATTCCTGTATGGCGGCAACGCCGCCTATATCGAAGACCTCTACGCGCG
CTACGAGGTCGACCCCAATTCGGTCGATGCCGAATGGCAGGTGTTCTTCA
GAAGCCTGAAGGACGAACGCGCCGAAGTCATCAAGAACTCGACCGGCCCG
TCGTGGAAGCGGCCCAATCTCATTTCCGCCGCCGACGTGCAGCAGGCAAC
GCGCGATTCGATCCACGCACTGATGCTCATTCGCGCCTACCGCATCCGCG
GCCACTTCCACGCCAAGCTCGATCCGCTGGGCTTGGAGCCCGAGAAGAGC
GAGGAGGAGCTCGATCCGCGCTCCTACGGCTTCACCGACGCGGACATGGA
CCGCAAGATCTTCCTCGACAAGGTGCTG
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