mRNA_P-wetherbeei_contig1909.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1909.1.1
Unique NamemRNA_P-wetherbeei_contig1909.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1909.1.1 vs. uniprot
Match: A0A836CJC0_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC0_9STRA)

HSP 1 Score: 208 bits (530), Expect = 8.890e-67
Identity = 103/144 (71.53%), Postives = 123/144 (85.42%), Query Frame = 1
Query:    1 PPQVSGYLLKKAKTGKWQRRWFETQAHFLTYYKTKKMEKLLAALNLPQVGDIRLVDPDPNDPENDGCLFTIELNERVYTMKAPSREEAARWVEVLRVLQSLETDEARNA-MESPSASMVRSQDGAERPNGGAEWKKE----GCF 417
            PPQ+SGYL KKAKTGKWQRRWFET AHFLTYYKT+K+EKLLAALNLPQVG+I+LVDPDPNDPEN+G LFTIELN RVYTMKA +REEAARWVEVL+ LQ+++ D+AR+A  ESP AS+VR+ +G + P   + W+K+    GCF
Sbjct:    8 PPQMSGYLHKKAKTGKWQRRWFETNAHFLTYYKTRKVEKLLAALNLPQVGEIKLVDPDPNDPENNGALFTIELNTRVYTMKAGTREEAARWVEVLKALQAMDVDDARHAGAESPHASIVRTGEGTDAPGPDSYWRKDSKCCGCF 151          
BLAST of mRNA_P-wetherbeei_contig1909.1.1 vs. uniprot
Match: A0A835ZL19_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL19_9STRA)

HSP 1 Score: 199 bits (506), Expect = 3.880e-63
Identity = 102/150 (68.00%), Postives = 123/150 (82.00%), Query Frame = 1
Query:    1 PPQVSGYLLKKAKTGKWQRRWFETQAHFLTYYKTKKMEKLLAALNLPQVGDIRLVDPDPNDPENDGCLFTIELNERVYTMKAPSREEAARWVEVLRVLQSLETDEARNAMESPSASMVRSQDGAERPNGGAEWKKEG-CFGGLCSCLQSS 447
            PPQ+SGYL KKAKTGKWQRRWFET AHFLTYYKT+K+EKLLAALNLPQVG+IRL+D DP+D EN+G LF+IELN R+Y M+A SREEAARWVEVL+ LQ+L+ +++R   ESP A+MVR+ DG    +G   WKK+  CFG LC C Q+S
Sbjct:    7 PPQMSGYLYKKAKTGKWQRRWFETNAHFLTYYKTRKVEKLLAALNLPQVGEIRLMDEDPSDEENNGALFSIELNTRIYVMRAASREEAARWVEVLKALQALDAEDSRGH-ESPHAAMVRAPDGIG--SGEGYWKKDDKCFG-LCGCFQAS 152          
BLAST of mRNA_P-wetherbeei_contig1909.1.1 vs. uniprot
Match: D7G4R3_ECTSI (PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4R3_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 4.170e-60
Identity = 99/157 (63.06%), Postives = 121/157 (77.07%), Query Frame = 1
Query:    1 PPQVSGYLLKKAKTGKWQRRWFETQAHFLTYYKTKKMEKLLAALNLPQVGDIRLVDPDPN--DPENDGCLFTIELNERVYTMKAPSREEAARWVEVLRVLQSLETDEARNAMESPSASMVRSQDGAERPNGGAE------WKKEGCFGGLCSCLQSS 447
            PPQ+SGYL KKAKTGKWQ+RWFET AH+LTYYK+KKMEKLLAALNLPQVG+IRLVDPD    + +NDG LFTIELN+RVYTMKA +REEAARWVEVL+VLQ++E +E++   E P+ASM+R+  G+     G        W KE    GLC+C  ++
Sbjct:    7 PPQISGYLQKKAKTGKWQKRWFETNAHYLTYYKSKKMEKLLAALNLPQVGEIRLVDPDDESYEEDNDGSLFTIELNDRVYTMKASTREEAARWVEVLKVLQTMEEEESKTT-EDPTASMMRNAQGSIPVTPGTATRSADAWSKEPACCGLCACFSAN 162          
BLAST of mRNA_P-wetherbeei_contig1909.1.1 vs. uniprot
Match: A0A4D9CUK8_9STRA (PH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CUK8_9STRA)

HSP 1 Score: 130 bits (327), Expect = 6.210e-36
Identity = 75/141 (53.19%), Postives = 95/141 (67.38%), Query Frame = 1
Query:   10 VSGYLLKKAKTGKWQRRWFETQAHFLTYYKTKKMEKLLAALNLPQVGDIRLVD-PDPNDPENDGCLFTIELNERVYTMKAPSREEAARWVEVLRVLQSLETDEARNAMESPSASMVRSQDGAERPNGGAEWKKEGCFGGLC 429
            VSGYL KK + G+WQ+RWFET   FLTYYK+KKM KLLAAL+L QVG I+L + P+P D E+ G LF+IELNERVYT+KA +  EAA+WVEVL  L+   +D     M + + + V S    E   G  EWKK+    G+C
Sbjct:   17 VSGYLHKKTRDGRWQKRWFETNGCFLTYYKSKKMTKLLAALDLVQVGTIKLTEVPEPGDEEDLGSLFSIELNERVYTLKAGNDVEAAKWVEVLNQLKVGGSD----VMPTCAGNTVTSSMEIEAGGGETEWKKKLQCCGIC 153          
BLAST of mRNA_P-wetherbeei_contig1909.1.1 vs. uniprot
Match: A0A6U4KSE8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4KSE8_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.990e-35
Identity = 59/97 (60.82%), Postives = 78/97 (80.41%), Query Frame = 1
Query:   10 VSGYLLKKAKTGKWQRRWFETQAHFLTYYKTKKMEKLLAALNLPQVGDIRLVDPDPNDPENDGCLFTIELNERVYTMKAPSREEAARWVEVLRVLQS 300
            + GYL K+ K  +WQ+RWFET   FLTYYK++KM+K+LAALNLPQVG+I+L+     DP+NDG LFTIEL  RVYT++AP+R+ AA+WVEVL  L++
Sbjct:   25 IQGYLHKRTKDMRWQKRWFETNGCFLTYYKSRKMDKILAALNLPQVGEIKLLPESAADPDNDGTLFTIELKARVYTLRAPNRKNAAKWVEVLNELKT 121          
BLAST of mRNA_P-wetherbeei_contig1909.1.1 vs. uniprot
Match: A0A7S2G8J6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G8J6_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.830e-30
Identity = 59/96 (61.46%), Postives = 71/96 (73.96%), Query Frame = 1
Query:   16 GYLLKKAKTGKWQRRWFETQAHFLTYYKTKKMEKLLAALNLPQVGDIRLVDPDP-NDPENDGCLFTIELNERVYTMKAPSREEAARWVEVLRVLQS 300
            GYL KK K+G+WQRRWFET   FLTYYK KKM KLLAA+NLPQVGDI +++PD  ND   DG  F+I+LN R Y +KA   EEA  WV+VL  L++
Sbjct:   32 GYLQKKTKSGQWQRRWFETNGVFLTYYKNKKMSKLLAAVNLPQVGDIAVMEPDAENDDTVDGGCFSIQLNSREYILKAADHEEALAWVKVLTKLKA 127          
BLAST of mRNA_P-wetherbeei_contig1909.1.1 vs. uniprot
Match: A0A7S2DE48_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DE48_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.950e-30
Identity = 58/107 (54.21%), Postives = 75/107 (70.09%), Query Frame = 1
Query:    4 PQVSGYLLKKAKTGKWQRRWFETQAHFLTYYKTKKMEKLLAALNLPQVGDIRLVDPDP-NDPENDGCLFTIELNERVYTMKAPSREEAARWVEVLRVLQSLETDEAR 321
            P  +GYL KK K GKWQ+RWFET   FLTYYK +KM+KLLAA+ LP+VG+I L+DP P ND   +  LF+I+LN R Y +KA S  EA  WV++L  L+  E+ + R
Sbjct:   12 PYKNGYLQKKTKQGKWQKRWFETNGIFLTYYKNQKMKKLLAAVKLPEVGEISLIDPHPDNDDTVEPGLFSIQLNSREYILKAESHPEAVEWVKILTKLKESESKDTR 118          
BLAST of mRNA_P-wetherbeei_contig1909.1.1 vs. uniprot
Match: T0PWW2_SAPDV (PH domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=T0PWW2_SAPDV)

HSP 1 Score: 115 bits (288), Expect = 9.840e-30
Identity = 68/131 (51.91%), Postives = 88/131 (67.18%), Query Frame = 1
Query:    7 QVSGYLLKKAKTGKWQRRWFETQAHFLTYYKTKKMEKLLAALNLPQVGDIRLVDPDPNDPENDGCLFTIELNERVYTMKAPSREEAARWVEVL------RVLQSLETDEARNAMESPSASMVRSQDGAERP 381
            ++ GYLLKK + GKWQ+RWFET   FLTYYK K+ +KLLAALNLPQVG+I L+   P   E+   LFTIELN+R+YT+KA  +++AA WVE L       V+ S  TDEA     + S+  +  QDGA+ P
Sbjct:   21 ELRGYLLKKTRNGKWQKRWFETNGCFLTYYK-KQGQKLLAALNLPQVGEIALL---PESAEDGPGLFTIELNDRIYTIKAKGQDDAALWVEALVWRQQGGVVASSTTDEAMLLQHAGSSEDL--QDGADSP 145          
BLAST of mRNA_P-wetherbeei_contig1909.1.1 vs. uniprot
Match: A0A1V9Z5R2_9STRA (PH domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z5R2_9STRA)

HSP 1 Score: 113 bits (283), Expect = 4.870e-29
Identity = 68/131 (51.91%), Postives = 87/131 (66.41%), Query Frame = 1
Query:    7 QVSGYLLKKAKTGKWQRRWFETQAHFLTYYKTKKMEKLLAALNLPQVGDIRLVDPDPNDPENDGCLFTIELNERVYTMKAPSREEAARWVEVL------RVLQSLETDEARNAMESPSASMVRSQDGAERP 381
            ++ GYLLKK + GKWQ+RWFET   FLTYYK K+ +KLLAALNLPQVG+I L+   P   E+   LFTIELN+R+YT+KA S+++AA WVE L       V+ S  TDEA     + S   +  QDG + P
Sbjct:   17 ELRGYLLKKTRNGKWQKRWFETNGCFLTYYK-KQGQKLLAALNLPQVGEIALL---PEGAEDGPGLFTIELNDRIYTIKAKSQDDAALWVEALVWRQQGGVVASSNTDEALLLQHANSNEDM--QDGMDSP 141          
BLAST of mRNA_P-wetherbeei_contig1909.1.1 vs. uniprot
Match: A0A7S2WTC5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTC5_9STRA)

HSP 1 Score: 114 bits (285), Expect = 7.120e-29
Identity = 68/162 (41.98%), Postives = 87/162 (53.70%), Query Frame = 1
Query:   10 VSGYLLKKAKTGKWQRRWFETQAHFLTYYKTKKMEKLLAALNLPQVGDIRLVDPDPNDP-ENDGCLFTIELNERVYTMKAPSREEAARWVEVLRVLQS---LETDEARNAMESPSASMVRSQDGAERPNGGAE------------------WKKEGCFGGLC 429
            + GYL KK + G+WQ+RWFET   FLTYYK KKM KLLAALNLPQVG+I+L+D   +D  ++ G LF+I LN+R Y +KA  RE+A  WV  L +L+    L      +    P A      D  +  NG AE                  W+K   FG  C
Sbjct:   46 IHGYLQKKTRDGRWQKRWFETNGCFLTYYKNKKMAKLLAALNLPQVGEIKLLDTGHSDDVDSSGALFSIALNDREYMLKAAKREDAEVWVTKLNLLKQNPQLPASAGSSVTVQPDAQAGLDDDLPKPSNGAAESRVPPATGHVTMSSSSAKWEKSSGFGSCC 207          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1909.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJC0_9STRA8.890e-6771.53PH domain-containing protein n=1 Tax=Tribonema min... [more]
A0A835ZL19_9STRA3.880e-6368.00PH domain-containing protein n=1 Tax=Tribonema min... [more]
D7G4R3_ECTSI4.170e-6063.06PH domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A4D9CUK8_9STRA6.210e-3653.19PH domain-containing protein n=2 Tax=Monodopsidace... [more]
A0A6U4KSE8_9STRA1.990e-3560.82Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2G8J6_9STRA1.830e-3061.46Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2DE48_9STRA2.950e-3054.21Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
T0PWW2_SAPDV9.840e-3051.91PH domain-containing protein n=3 Tax=Saprolegnia T... [more]
A0A1V9Z5R2_9STRA4.870e-2951.91PH domain-containing protein n=1 Tax=Achlya hypogy... [more]
A0A7S2WTC5_9STRA7.120e-2941.98Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1909contigP-wetherbeei_contig1909:2456..3388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G4R3
PFAMsPH
Model size450
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.84e-61
EggNOG OGs2C4T9@1|root,2S2C6@2759|Eukaryota
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-20_000680.1
DescriptionPleckstrin homology domain.
Cds size450
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186163.6362612-CDS-P-wetherbeei_contig1909:2455..25541683186163.6362612-CDS-P-wetherbeei_contig1909:2455..2554Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1909 2456..2554 +
1683186163.6473806-CDS-P-wetherbeei_contig1909:2721..28901683186163.6473806-CDS-P-wetherbeei_contig1909:2721..2890Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1909 2722..2890 +
1683186163.6561651-CDS-P-wetherbeei_contig1909:3206..33881683186163.6561651-CDS-P-wetherbeei_contig1909:3206..3388Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1909 3207..3388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1909.1.1prot_P-wetherbeei_contig1909.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1909 2456..3388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1909.1.1

>prot_P-wetherbeei_contig1909.1.1 ID=prot_P-wetherbeei_contig1909.1.1|Name=mRNA_P-wetherbeei_contig1909.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=150bp
PPQVSGYLLKKAKTGKWQRRWFETQAHFLTYYKTKKMEKLLAALNLPQVG
DIRLVDPDPNDPENDGCLFTIELNERVYTMKAPSREEAARWVEVLRVLQS
LETDEARNAMESPSASMVRSQDGAERPNGGAEWKKEGCFGGLCSCLQSS*
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mRNA from alignment at P-wetherbeei_contig1909:2456..3388+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1909.1.1 ID=mRNA_P-wetherbeei_contig1909.1.1|Name=mRNA_P-wetherbeei_contig1909.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=933bp|location=Sequence derived from alignment at P-wetherbeei_contig1909:2456..3388+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCCACAGGTCAGCGGTTATCTTTTGAAGAAGGCCAAGACCGGAAAATG GCAGCGACGATGGTTCGAAACGCAAGCCCACTTCTTGACCTACTATAAGG TGAGGCTTTTCGCGTCGGAGAGCAGTTCTGCGAGGCAATCTTACTGGCTG CATCCACAGGGCTTTTGCGTCATGATTTGGCGTCATTGCGCAGAGCATTT GCGCGGTCTTTGTCTTTTTTGGTTTGGTTTGCCCAACGCTTGCCCTCTAC TTTCCGTCCATGGCAGACCAAGAAGATGGAGAAGTTGCTAGCGGCGTTGA ACCTGCCACAAGTCGGAGATATCAGACTGGTAGATCCCGACCCGAATGAC CCCGAGAACGACGGATGCCTGTTCACCATCGAGCTCAACGAGCGGGTTTA CACGATGAAAGCGCCATCACGGGAAGAGGCAGCACGTGAGCTGCTTTTGC CCCCTTGCGACTCGATATGCGTCGTTTTTTGGATTCAATTGAACGCTTGT GTGCAGCCGGATTTACGATGATCAGATCTCCAATGGGAATTGCTTTTGTG AACACAGCTGCGTTTGCAAAGTGAGTAGTACTCTTTCGATTTACGTGGGA AGCAAGCGTCGCCATTGGCCCTTTAGATCCAGTCTTTTTCCTGAAACGTC ACATGACGTGAGGGCTTCCGCGATATGCTTACCTGACACTTCTAAAGTTT TTCTGCCTTGATGTTCAACTTTCAGCCCCCACGTGGTGCACGGGTCCGCA GGATGGGTGGAGGTGCTGCGGGTCCTCCAGTCGCTGGAGACGGACGAAGC GCGCAACGCGATGGAGAGCCCGTCGGCGTCGATGGTGCGGTCCCAGGACG GCGCCGAGCGGCCCAACGGCGGTGCCGAGTGGAAGAAGGAGGGCTGCTTT GGCGGCCTCTGCTCCTGCTTGCAATCCTCTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1909:2456..3388+

>mRNA_P-wetherbeei_contig1909.1.1 ID=mRNA_P-wetherbeei_contig1909.1.1|Name=mRNA_P-wetherbeei_contig1909.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig1909:2456..3388+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCCACAGGTCAGCGGTTATCTTTTGAAGAAGGCCAAGACCGGAAAATG
GCAGCGACGATGGTTCGAAACGCAAGCCCACTTCTTGACCTACTATAAGA
CCAAGAAGATGGAGAAGTTGCTAGCGGCGTTGAACCTGCCACAAGTCGGA
GATATCAGACTGGTAGATCCCGACCCGAATGACCCCGAGAACGACGGATG
CCTGTTCACCATCGAGCTCAACGAGCGGGTTTACACGATGAAAGCGCCAT
CACGGGAAGAGGCAGCACGATGGGTGGAGGTGCTGCGGGTCCTCCAGTCG
CTGGAGACGGACGAAGCGCGCAACGCGATGGAGAGCCCGTCGGCGTCGAT
GGTGCGGTCCCAGGACGGCGCCGAGCGGCCCAACGGCGGTGCCGAGTGGA
AGAAGGAGGGCTGCTTTGGCGGCCTCTGCTCCTGCTTGCAATCCTCTTAG
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