mRNA_P-wetherbeei_contig19080.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19080.1.1
Unique NamemRNA_P-wetherbeei_contig19080.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19080.1.1 vs. uniprot
Match: A0A0R3KZU9_9BRAD (Uncharacterized protein n=6 Tax=Bradyrhizobium TaxID=374 RepID=A0A0R3KZU9_9BRAD)

HSP 1 Score: 176 bits (446), Expect = 9.460e-51
Identity = 80/106 (75.47%), Postives = 92/106 (86.79%), Query Frame = 3 
Query:  348 GRQQIFAAESAQFTQANDTLVGGRGGDIFRFEGLINAPDEIVARHVNADGTVDWAGVTGENDNVHDHWIDGFGNDVIRDFNRAQGDRIEIAAHTAEVQSIQHLDSN 665
            G+ QIFA E+A F   NDT+ GG GGD FRFEG++NA DEIVA+HVNADGT+DW GVTGEN+  HDHW+DGFGNDVIRDFNRAQGD+IEI+AHTAEV+SIQH DSN
Sbjct:  119 GKTQIFATETAAFKAVNDTITGGAGGDTFRFEGMVNAKDEIVAKHVNADGTIDWVGVTGENNATHDHWVDGFGNDVIRDFNRAQGDKIEISAHTAEVKSIQHKDSN 224
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BLAST of mRNA_P-wetherbeei_contig19080.1.1 vs. uniprot
Match: A0A1B9YQC8_9BRAD (Uncharacterized protein n=7 Tax=Bradyrhizobium TaxID=374 RepID=A0A1B9YQC8_9BRAD)

HSP 1 Score: 173 bits (439), Expect = 1.060e-49
Identity = 80/106 (75.47%), Postives = 90/106 (84.91%), Query Frame = 3 
Query:  348 GRQQIFAAESAQFTQANDTLVGGRGGDIFRFEGLINAPDEIVARHVNADGTVDWAGVTGENDNVHDHWIDGFGNDVIRDFNRAQGDRIEIAAHTAEVQSIQHLDSN 665
            G  QIFA E+A F   NDTL GGRGGD FRFEG++NA DEIVA+HVN DGT+DW GVTGEN   HDHW+DGFGNDVIRDFNRAQGD+IEI+AHTAEV+SI+H DSN
Sbjct:  119 GTTQIFAEETAAFKAVNDTLTGGRGGDTFRFEGMVNAKDEIVAKHVNDDGTIDWVGVTGENGATHDHWVDGFGNDVIRDFNRAQGDKIEISAHTAEVKSIEHKDSN 224
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BLAST of mRNA_P-wetherbeei_contig19080.1.1 vs. uniprot
Match: A0A1B1UGY7_9BRAD (Uncharacterized protein n=4 Tax=Bradyrhizobium TaxID=374 RepID=A0A1B1UGY7_9BRAD)

HSP 1 Score: 170 bits (431), Expect = 1.660e-48
Identity = 78/106 (73.58%), Postives = 91/106 (85.85%), Query Frame = 3 
Query:  348 GRQQIFAAESAQFTQANDTLVGGRGGDIFRFEGLINAPDEIVARHVNADGTVDWAGVTGENDNVHDHWIDGFGNDVIRDFNRAQGDRIEIAAHTAEVQSIQHLDSN 665
            G+ QIFAAE+A F Q ND + GGRG D FRFEG++NA DEIVA+HVNADGT+DW GVTGEN  VHDHW+DGFGND IRDF+RAQGD+IEI+AHTAEV+SI + DSN
Sbjct:  119 GKTQIFAAETAAFKQVNDIMTGGRGADTFRFEGMVNAKDEIVAKHVNADGTIDWVGVTGENGAVHDHWVDGFGNDTIRDFSRAQGDKIEISAHTAEVKSITYKDSN 224
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BLAST of mRNA_P-wetherbeei_contig19080.1.1 vs. uniprot
Match: A0A0R3MJG8_9BRAD (Uncharacterized protein n=4 Tax=Bradyrhizobium TaxID=374 RepID=A0A0R3MJG8_9BRAD)

HSP 1 Score: 162 bits (410), Expect = 2.280e-45
Identity = 75/106 (70.75%), Postives = 87/106 (82.08%), Query Frame = 3 
Query:  348 GRQQIFAAESAQFTQANDTLVGGRGGDIFRFEGLINAPDEIVARHVNADGTVDWAGVTGENDNVHDHWIDGFGNDVIRDFNRAQGDRIEIAAHTAEVQSIQHLDSN 665
            G+ QIFA ESA F   NDT+ GG G D FRFE  +NA DEIVA+HVNADGT+DW GVTGEN+  HDHW+DG GNDVIRDFNRAQGD+IEI+ HTAEV+SI++ DSN
Sbjct:  119 GKTQIFATESAAFKAVNDTITGGSGADTFRFEMNVNAKDEIVAKHVNADGTIDWVGVTGENNATHDHWVDGIGNDVIRDFNRAQGDKIEISGHTAEVKSIEYKDSN 224
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BLAST of mRNA_P-wetherbeei_contig19080.1.1 vs. uniprot
Match: A0A7C9RDK3_9BRAD (Calcium-binding protein n=1 Tax=Candidatus Afipia apatlaquensis TaxID=2712852 RepID=A0A7C9RDK3_9BRAD)

HSP 1 Score: 141 bits (356), Expect = 1.860e-37
Identity = 70/107 (65.42%), Postives = 81/107 (75.70%), Query Frame = 3 
Query:  348 GRQQIFAAESAQFTQAN-DTLVGGRGGDIFRFEGLINAPDEIVARHVNADGTVDWAGVTGENDNVHDHWIDGFGNDVIRDFNRAQGDRIEIAAHTAEVQSIQHLDSN 665
            G  QIFA ESA  +  N + L GGRG D FRFEGL+NA DEIVA+H +A+G VDWAGVTGEN  VHDHW+D FG   I DFNRAQGD+IEIAAHTA ++SI + D N
Sbjct:  110 GTTQIFAGESAVLSAHNTNVLTGGRGADTFRFEGLVNAKDEIVAKHTDANGKVDWAGVTGENGAVHDHWVDAFGKATITDFNRAQGDKIEIAAHTAAIKSIAYKDVN 216
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BLAST of mRNA_P-wetherbeei_contig19080.1.1 vs. uniprot
Match: A0A0J9E4V2_9RHOB (Alkaline phosphatase n=2 Tax=Candidatus Rhodobacter lobularis TaxID=1675527 RepID=A0A0J9E4V2_9RHOB)

HSP 1 Score: 116 bits (290), Expect = 3.250e-26
Identity = 56/121 (46.28%), Postives = 76/121 (62.81%), Query Frame = 3 
Query:  303 HLAQPLRCRRDGGGTGRQQIFAAESAQFTQANDTLVGGRGGDIFRFEGLINAPDEIVARHVNADGTVDWAGVTGENDNVHDHWIDGFGNDVIRDFNRAQGDRIEIAAHTAEVQSIQHLDSN 665
            ++ QP+      GG    Q++  +       ND + GG G DIF F+ LINA +E +  H N DGT++W GV GEN N+HDHW+D  G+DVI DF+RA+GDRI I  HT ++ SI + DSN
Sbjct:  320 YVGQPVPAGTPNGG----QVYPGQPIP---GNDVMSGGAGADIFYFQTLINAREEFIREHTNNDGTINWHGVAGENGNIHDHWVDSIGDDVILDFSRAEGDRIVIEGHTTQISSITYGDSN 433
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BLAST of mRNA_P-wetherbeei_contig19080.1.1 vs. uniprot
Match: A0A222EYK8_9HYPH (Uncharacterized protein n=1 Tax=Labrenzia sp. VG12 TaxID=2021862 RepID=A0A222EYK8_9HYPH)

HSP 1 Score: 114 bits (286), Expect = 3.500e-26
Identity = 52/91 (57.14%), Postives = 65/91 (71.43%), Query Frame = 3 
Query:  393 ANDTLVGGRGGDIFRFEGLINAPDEIVARHVNADGTVDWAGVTGENDNVHDHWIDGFGNDVIRDFNRAQGDRIEIAAHTAEVQSIQHLDSN 665
            A+D L GG GGDIF F+ LINA +  +  H N DG++ W GV GEN N+HDHW+D  GNDVI DFNR +GDRI I  HT +++SI + DSN
Sbjct:  147 ADDVLTGGSGGDIFYFQTLINAKERFIEEHTNDDGSIRWHGVAGENANIHDHWVDMIGNDVITDFNRDEGDRIVIEGHTTKIRSITYGDSN 237
[Close]
BLAST of mRNA_P-wetherbeei_contig19080.1.1 vs. uniprot
Match: UPI001E319E56 (hypothetical protein n=1 Tax=Crocosphaera watsonii TaxID=263511 RepID=UPI001E319E56)

HSP 1 Score: 111 bits (277), Expect = 8.750e-26
Identity = 52/95 (54.74%), Postives = 69/95 (72.63%), Query Frame = 3 
Query:  384 FTQANDTLVGGRGGDIFRFEGLINAPDEIVARHVNA-DGTVDWAGVTGENDNVHDHWIDGFGNDVIRDFNRAQGDRIEIAAHTAEVQSIQHLDSN 665
            F  A+DTL+GG G D FRFE L++A DEIV +H +   G V+W  V  +NDNVHDHW++G GND I DFN+++GD+I IA HT +V  I++LD N
Sbjct:  162 FLDADDTLIGGLGADTFRFELLLDAKDEIVEKHADPITGKVNWRKVAHKNDNVHDHWVNGIGNDTILDFNKSEGDQIRIAGHTVQVDDIEYLDLN 256
[Close]
BLAST of mRNA_P-wetherbeei_contig19080.1.1 vs. uniprot
Match: A0A222FD36_9HYPH (Uncharacterized protein n=2 Tax=Labrenzia sp. VG12 TaxID=2021862 RepID=A0A222FD36_9HYPH)

HSP 1 Score: 114 bits (286), Expect = 1.180e-25
Identity = 52/91 (57.14%), Postives = 65/91 (71.43%), Query Frame = 3 
Query:  393 ANDTLVGGRGGDIFRFEGLINAPDEIVARHVNADGTVDWAGVTGENDNVHDHWIDGFGNDVIRDFNRAQGDRIEIAAHTAEVQSIQHLDSN 665
            A+D L GG GGDIF F+ LINA +  +  H N DG++ W GV GEN N+HDHW+D  GNDVI DFNR +GDRI I  HT +++SI + DSN
Sbjct: 2482 ADDVLTGGSGGDIFYFQTLINAKERFIEEHTNDDGSIRWHGVAGENANIHDHWVDMIGNDVITDFNRDEGDRIVIEGHTTKIRSITYGDSN 2572
[Close]
BLAST of mRNA_P-wetherbeei_contig19080.1.1 vs. uniprot
Match: A0A222F0D5_9HYPH (Uncharacterized protein n=2 Tax=Labrenzia sp. VG12 TaxID=2021862 RepID=A0A222F0D5_9HYPH)

HSP 1 Score: 114 bits (285), Expect = 1.480e-25
Identity = 51/91 (56.04%), Postives = 65/91 (71.43%), Query Frame = 3 
Query:  393 ANDTLVGGRGGDIFRFEGLINAPDEIVARHVNADGTVDWAGVTGENDNVHDHWIDGFGNDVIRDFNRAQGDRIEIAAHTAEVQSIQHLDSN 665
            A+D L GG GGD+F F+ LINA +  +  H N DG++ W GV GEN N+HDHW+D  GNDVI DFNR +GDRI I  HT +++SI + DSN
Sbjct:  362 ADDVLTGGSGGDVFYFQTLINAKERFIEEHTNDDGSIRWHGVAGENANIHDHWVDMIGNDVITDFNRDEGDRIVIEGHTTKIRSITYGDSN 452
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19080.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0R3KZU9_9BRAD9.460e-5175.47Uncharacterized protein n=6 Tax=Bradyrhizobium Tax... [more]
A0A1B9YQC8_9BRAD1.060e-4975.47Uncharacterized protein n=7 Tax=Bradyrhizobium Tax... [more]
A0A1B1UGY7_9BRAD1.660e-4873.58Uncharacterized protein n=4 Tax=Bradyrhizobium Tax... [more]
A0A0R3MJG8_9BRAD2.280e-4570.75Uncharacterized protein n=4 Tax=Bradyrhizobium Tax... [more]
A0A7C9RDK3_9BRAD1.860e-3765.42Calcium-binding protein n=1 Tax=Candidatus Afipia ... [more]
A0A0J9E4V2_9RHOB3.250e-2646.28Alkaline phosphatase n=2 Tax=Candidatus Rhodobacte... [more]
A0A222EYK8_9HYPH3.500e-2657.14Uncharacterized protein n=1 Tax=Labrenzia sp. VG12... [more]
UPI001E319E568.750e-2654.74hypothetical protein n=1 Tax=Crocosphaera watsonii... [more]
A0A222FD36_9HYPH1.180e-2557.14Uncharacterized protein n=2 Tax=Labrenzia sp. VG12... [more]
A0A222F0D5_9HYPH1.480e-2556.04Uncharacterized protein n=2 Tax=Labrenzia sp. VG12... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19080contigP-wetherbeei_contig19080:641..1305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1038859.AXAU01000001_gene3077
Model size665
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.64e-05
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,1NS6I@1224|Proteobacteria,2UQ0R@28211|Alphaproteobacteria
Descriptioncalcium- and calmodulin-responsive adenylate cyclase activity
Cds size390
COG categoryQ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186163.444364-UTR-P-wetherbeei_contig19080:640..7001683186163.444364-UTR-P-wetherbeei_contig19080:640..700Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19080 641..700 +
1683186163.463303-UTR-P-wetherbeei_contig19080:1090..13051683186163.463303-UTR-P-wetherbeei_contig19080:1090..1305Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19080 1091..1305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186163.4544227-CDS-P-wetherbeei_contig19080:700..10901683186163.4544227-CDS-P-wetherbeei_contig19080:700..1090Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19080 701..1090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19080.1.1prot_P-wetherbeei_contig19080.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19080 701..1090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19080.1.1

>prot_P-wetherbeei_contig19080.1.1 ID=prot_P-wetherbeei_contig19080.1.1|Name=mRNA_P-wetherbeei_contig19080.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MTGGSSGHDHLNGTASNNVLYSGGSADSVAGMAGNDTLDGGSGDDKIWGG
SGNDRLHGGNGADLLVGGFGADRMEGGSGNDTLLSRSDAGEMVAAQDGSK
SSPPSRPSSLRPMTPLWVAVAATFSASKV*
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mRNA from alignment at P-wetherbeei_contig19080:641..1305+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19080.1.1 ID=mRNA_P-wetherbeei_contig19080.1.1|Name=mRNA_P-wetherbeei_contig19080.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=665bp|location=Sequence derived from alignment at P-wetherbeei_contig19080:641..1305+ (Phaeothamnion wetherbeei SAG_119_79)
TTCAACAACAACCGCTTCGAGGATTACTTCAACAACCGCTTCGAGGATTT
CTTCGCCTCGATGACAGGCGGCAGTTCCGGGCATGATCATCTCAACGGCA
CGGCTTCCAACAATGTTCTGTACAGCGGAGGTAGCGCTGATTCAGTTGCC
GGAATGGCCGGCAACGACACGCTCGACGGCGGTTCCGGAGACGACAAGAT
CTGGGGCGGCTCCGGCAACGATCGGCTCCACGGCGGTAACGGCGCCGATC
TCCTGGTCGGCGGCTTCGGCGCCGATCGGATGGAGGGCGGCTCCGGCAAC
GACACCTTGCTCAGCCGCTCCGATGCCGGCGAGATGGTGGCGGCACAGGA
CGGCAGCAAATCTTCGCCGCCGAGTCGGCCCAGTTCACTCAGGCCAATGA
CACCCTTGTGGGTGGCCGTGGCGGCGACATTTTCCGCTTCGAAGGTTTGA
TCAACGCGCCGGACGAGATCGTCGCCCGGCACGTCAACGCCGACGGCACG
GTCGACTGGGCGGGGGTGACCGGTGAGAACGACAACGTCCACGACCATTG
GATCGACGGCTTCGGCAACGACGTGATCCGCGACTTCAATCGTGCCCAAG
GCGACAGGATTGAGATTGCCGCGCACACGGCGGAAGTGCAGTCGATCCAG
CATCTCGACAGCAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19080:641..1305+

>mRNA_P-wetherbeei_contig19080.1.1 ID=mRNA_P-wetherbeei_contig19080.1.1|Name=mRNA_P-wetherbeei_contig19080.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig19080:641..1305+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACAGGCGGCAGTTCCGGGCATGATCATCTCAACGGCACGGCTTCCAA
CAATGTTCTGTACAGCGGAGGTAGCGCTGATTCAGTTGCCGGAATGGCCG
GCAACGACACGCTCGACGGCGGTTCCGGAGACGACAAGATCTGGGGCGGC
TCCGGCAACGATCGGCTCCACGGCGGTAACGGCGCCGATCTCCTGGTCGG
CGGCTTCGGCGCCGATCGGATGGAGGGCGGCTCCGGCAACGACACCTTGC
TCAGCCGCTCCGATGCCGGCGAGATGGTGGCGGCACAGGACGGCAGCAAA
TCTTCGCCGCCGAGTCGGCCCAGTTCACTCAGGCCAATGACACCCTTGTG
GGTGGCCGTGGCGGCGACATTTTCCGCTTCGAAGGTTTGA
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