mRNA_P-wetherbeei_contig1907.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1907.2.1
Unique NamemRNA_P-wetherbeei_contig1907.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1907.2.1 vs. uniprot
Match: A0A835Z498_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z498_9STRA)

HSP 1 Score: 359 bits (922), Expect = 7.980e-122
Identity = 175/227 (77.09%), Postives = 196/227 (86.34%), Query Frame = 1
Query:   16 DTEFPGVVARPIVDYTQSDYQYQTLRCNVDLLKIIQLGLSFANEEGEFAEGCCCWQFNFKFSLTEDMYAQDSIDLLKQSDIQFEKHANQGIDVHEFGELLMTSGLVLVDHVKWISFHSGYDFGYLIKLLTSQALPPTEGEFFELLKAYFPCLFDIKFVMMSLENFHGGLNKLGDELKVERIGQMHQAGSDSLLTAQVFFKMMKASFGGLSCTEMEKFKGDLYGYGTN 696
            DTEFPGVVARPI D+ QSDYQYQTLRCNVDLLKIIQLGLSFANE+GEFAEGCCCWQFNFKFSL EDMYAQDSIDLLKQS I F++H  +GIDV EFGELLMTSGLVLVD+V W+SFHSGYDFGYL+K+LTS ALP  E EFF LLK YFP L+DIK++M S + FHGGLNKLGD+L VERIGQ HQAGSDSLLTAQVFFK+++  F G+S    EK+  +L+GYG N
Sbjct:   62 DTEFPGVVARPIGDFGQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAEGCCCWQFNFKFSLGEDMYAQDSIDLLKQSGINFDQHEARGIDVLEFGELLMTSGLVLVDNVTWVSFHSGYDFGYLLKVLTSCALPGQEKEFFHLLKLYFPRLYDIKYLMASQDGFHGGLNKLGDDLSVERIGQKHQAGSDSLLTAQVFFKIVETKFNGMSNLSREKYNSELFGYGNN 288          
BLAST of mRNA_P-wetherbeei_contig1907.2.1 vs. uniprot
Match: A0A836C813_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C813_9STRA)

HSP 1 Score: 344 bits (883), Expect = 8.110e-116
Identity = 169/228 (74.12%), Postives = 193/228 (84.65%), Query Frame = 1
Query:   16 DTEFPGVVARPIVDYTQSDYQYQTLRCNVDLLKIIQLGLSFANEEGEFAEGCCCWQFNFKFSLTEDMYAQDSIDLLKQSDIQFEKHANQGIDVHEFGELLMTSGLVLVDHVKWISFHSGYDFGYLI-KLLTSQALPPTEGEFFELLKAYFPCLFDIKFVMMSLENFHGGLNKLGDELKVERIGQMHQAGSDSLLTAQVFFKMMKASFGGLSCTEMEKFKGDLYGYGTN 696
            DTEFPGVVARP+ D +QSDYQYQTLRCNVDLLKIIQLGLSFANE+GEFAEGCCCWQFNFKFSL EDMYAQDSIDLLKQS ++F  H  +GIDV +FGELL+ SGLVLVD+V WISFHSGYDFGYL+ K+LTS ALP  E +FF LLK YFP L+DIK++M + + FHGGLNKLGD+L VERIGQ HQAGSDSLLTAQVFFK++   F G+S    EK+  +L+GYG N
Sbjct:   58 DTEFPGVVARPLGDVSQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAEGCCCWQFNFKFSLDEDMYAQDSIDLLKQSGLEFRDHCARGIDVIDFGELLIASGLVLVDNVTWISFHSGYDFGYLLGKVLTSSALPGQEKDFFTLLKMYFPRLYDIKYLMANQDGFHGGLNKLGDDLAVERIGQKHQAGSDSLLTAQVFFKIVDTKFNGMSNLSREKYNLELFGYGNN 285          
BLAST of mRNA_P-wetherbeei_contig1907.2.1 vs. uniprot
Match: A0A7S2V6J5_9STRA (Poly(A)-specific ribonuclease (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6J5_9STRA)

HSP 1 Score: 332 bits (850), Expect = 7.230e-112
Identity = 158/228 (69.30%), Postives = 188/228 (82.46%), Query Frame = 1
Query:   16 DTEFPGVVARPIVDYTQSDYQYQTLRCNVDLLKIIQLGLSFANEEGEFAEGCCCWQFNFKFSLTEDMYAQDSIDLLKQSDIQFEKHANQGIDVHEFGELLMTSGLVLVDHVKWISFHSGYDFGYLIKLLTSQALPPTEGEFFELLKAYFPCLFDIKFVMMSLENFHGGLNKLGDELKVERIGQMHQAGSDSLLTAQVFFKMMKASFG-GLSCTEMEKFKGDLYGYGTN 696
            DTEFPGVVARP  DY  SDY YQTLRCNVDLLKIIQLG++FA++ GE AEGC CWQFNFKF+L+EDMYAQDSIDLLK S I+F +H   GIDVH FGELL+TSGLVL+D+VKWISFHSGYDFGYL+K+LT QALP  E  FFELL+ YFPC++DIK++M   +  HGGLNKL +++KVERIG MHQAGSDSLLTAQ FF++++  F   +S  +  KF+G+LYG G N
Sbjct:   39 DTEFPGVVARPASDYNSSDYMYQTLRCNVDLLKIIQLGIAFADKNGEIAEGCACWQFNFKFNLSEDMYAQDSIDLLKASGIEFTRHEKYGIDVHHFGELLITSGLVLMDNVKWISFHSGYDFGYLLKILTCQALPAEEAHFFELLRLYFPCIYDIKYLMTICDGIHGGLNKLAEDIKVERIGPMHQAGSDSLLTAQAFFRLIELRFSVPISEWDDSKFRGELYGLGGN 266          
BLAST of mRNA_P-wetherbeei_contig1907.2.1 vs. uniprot
Match: D8LIU5_ECTSI (Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU5_ECTSI)

HSP 1 Score: 311 bits (798), Expect = 2.440e-102
Identity = 154/235 (65.53%), Postives = 183/235 (77.87%), Query Frame = 1
Query:   16 DTEFPGVVARPIVDYTQSDYQYQTLRCNVDLLKIIQLGLSFANEEGEFAE-GCCCWQFNFKFSLTEDMYAQDSIDLLKQSDIQFEKHANQGIDVHEFGELLMTSGLVLVDHVKWISFHSGYDFGYLIKLLTSQALPPTEGEFFELLKAYFPCLFDIKFVMMSLENFHGGLNKLGDELKVERIGQMHQAGSDSLLTAQVFFKMMKASFGGLSCTEMEK----FKGDLYGYGTNAYG 705
            DTEFPGVVARP+ D+ Q D+QYQTLRCNVD+LK+IQLGLSFANE+GE  E GCC WQFNF F+L+EDMYA DSI LLK S I F+ H  +GID+ +FGELLMTSGLVL+ +V W+SFHSGYDFGYLIKLLT   LP  E +FF+LL+ YFP ++DIK+++ S + FHGGLNKL D+LKVERIG MHQAGSDSLLT QVF K+    F G++  +  K    F G LYGYG N  G
Sbjct:   85 DTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNLSEDMYAHDSIQLLKNSGIDFQGHERRGIDLQDFGELLMTSGLVLLPNVTWLSFHSGYDFGYLIKLLTCSNLPTQESDFFDLLQLYFPKIYDIKYLVSSQDGFHGGLNKLADDLKVERIGPMHQAGSDSLLTEQVFLKVADVYFNGVANLDQGKSRGKFAGQLYGYGGNQTG 319          
BLAST of mRNA_P-wetherbeei_contig1907.2.1 vs. uniprot
Match: W7TF71_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TF71_9STRA)

HSP 1 Score: 310 bits (793), Expect = 3.170e-102
Identity = 147/227 (64.76%), Postives = 180/227 (79.30%), Query Frame = 1
Query:   16 DTEFPGVVARPIVDYTQSDYQYQTLRCNVDLLKIIQLGLSFANEEGEFAEGCCCWQFNFKFSLTEDMYAQDSIDLLKQSDIQFEKHANQGIDVHEFGELLMTSGLVLVDHVKWISFHSGYDFGYLIKLLTSQALPPTEGEFFELLKAYFPCLFDIKFVMMSLENFHGGLNKLGDELKVERIGQMHQAGSDSLLTAQVFFKMMKASFGGLSCTEMEKFKGDLYGYGTN 696
            DTEFPGVVARP+ D + SDYQY+TL+CNVDLLKIIQLGLSFA+ +G     C  WQFNF+FSL++D+YA+DSI+LLKQS I F KH + GIDV  FGELLMTSGLVL+D V+WISFHSGYDFGYL+K+LT  ALP  E  FF+LL+ YFPC +DIK++M + +  HGGL ++ +EL V R+G MHQAGSDSLLTAQ FF++   SF GL+    EKFKG+L+G G N
Sbjct:   63 DTEFPGVVARPVGDVSASDYQYKTLKCNVDLLKIIQLGLSFADSDGNSPPECPTWQFNFRFSLSDDIYAEDSIELLKQSGIDFSKHESHGIDVFRFGELLMTSGLVLMDEVRWISFHSGYDFGYLLKVLTCAALPSDENGFFDLLRTYFPCFYDIKYLMTACQGLHGGLQRIAEELSVARVGPMHQAGSDSLLTAQTFFRLCAVSFDGLNNLSDEKFKGELFGLGHN 289          
BLAST of mRNA_P-wetherbeei_contig1907.2.1 vs. uniprot
Match: A0A6H5JI77_9PHAE (Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI77_9PHAE)

HSP 1 Score: 313 bits (802), Expect = 5.180e-102
Identity = 154/235 (65.53%), Postives = 185/235 (78.72%), Query Frame = 1
Query:   16 DTEFPGVVARPIVDYTQSDYQYQTLRCNVDLLKIIQLGLSFANEEGEFAE-GCCCWQFNFKFSLTEDMYAQDSIDLLKQSDIQFEKHANQGIDVHEFGELLMTSGLVLVDHVKWISFHSGYDFGYLIKLLTSQALPPTEGEFFELLKAYFPCLFDIKFVMMSLENFHGGLNKLGDELKVERIGQMHQAGSDSLLTAQVFFKMMKASFGGLSCTEMEK----FKGDLYGYGTNAYG 705
            DTEFPGVVARP+ D+ Q D+QYQTLRCNVD+LK+IQLGLSFANE+GE  E GCC WQFNF F+L+EDMYA DSI+LLK S I F+ H  +GID+ +FGELLMTSGLVL+ +V W+SFHSGYDFGYLIKLLT   LP  E +FF+LL+ YFP ++DIK+++ S + FHGGLNKL D+LKVERIG MHQAGSDSLLT QVF K+    F G++  ++ K    F G LYGYG N  G
Sbjct:   88 DTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNLSEDMYAHDSIELLKNSGIDFQGHERRGIDLQDFGELLMTSGLVLLPNVTWLSFHSGYDFGYLIKLLTCSNLPTQESDFFDLLQLYFPKIYDIKYLVSSQDGFHGGLNKLADDLKVERIGPMHQAGSDSLLTEQVFLKVADVYFNGVANLDLGKSRGKFAGQLYGYGGNQTG 322          
BLAST of mRNA_P-wetherbeei_contig1907.2.1 vs. uniprot
Match: K8YSH1_NANGC (Poly(A)-specific ribonuclease n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YSH1_NANGC)

HSP 1 Score: 310 bits (793), Expect = 3.230e-100
Identity = 147/227 (64.76%), Postives = 180/227 (79.30%), Query Frame = 1
Query:   16 DTEFPGVVARPIVDYTQSDYQYQTLRCNVDLLKIIQLGLSFANEEGEFAEGCCCWQFNFKFSLTEDMYAQDSIDLLKQSDIQFEKHANQGIDVHEFGELLMTSGLVLVDHVKWISFHSGYDFGYLIKLLTSQALPPTEGEFFELLKAYFPCLFDIKFVMMSLENFHGGLNKLGDELKVERIGQMHQAGSDSLLTAQVFFKMMKASFGGLSCTEMEKFKGDLYGYGTN 696
            DTEFPGVVARP+ D + SDYQY+TL+CNVDLLKIIQLGLSFA+ +G     C  WQFNF+FSL++D+YA+DSI+LLKQS I F KH + GIDV  FGELLMTSGLVL+D V+WISFHSGYDFGYL+K+LT  ALP  E  FF+LL+ YFPC +DIK++M + +  HGGL ++ +EL V R+G MHQAGSDSLLTAQ FF++   SF GL+    EKFKG+L+G G N
Sbjct:  216 DTEFPGVVARPVGDVSASDYQYKTLKCNVDLLKIIQLGLSFADSDGNSPPECPTWQFNFRFSLSDDIYAEDSIELLKQSGIDFSKHESHGIDVFRFGELLMTSGLVLMDEVRWISFHSGYDFGYLLKVLTCAALPSDENGFFDLLRTYFPCFYDIKYLMTACQGLHGGLQRIAEELSVARVGPMHQAGSDSLLTAQTFFRLCAVSFDGLNNLSDEKFKGELFGLGHN 442          
BLAST of mRNA_P-wetherbeei_contig1907.2.1 vs. uniprot
Match: A0A7S2SP02_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP02_9STRA)

HSP 1 Score: 300 bits (769), Expect = 7.950e-99
Identity = 149/228 (65.35%), Postives = 178/228 (78.07%), Query Frame = 1
Query:   16 DTEFPGVVARPIVDYTQSDYQYQTLRCNVDLLKIIQLGLSFANEEGEFAEGCCCWQFNFKFSLTEDMYAQDSIDLLKQSDIQFEKHANQGIDVHEFGELLMTSGLVLVDHVKWISFHSGYDFGYLIKLLTSQALPPTEGEFFELLKAYFPCLFDIKFVMMSLENFHGGLNKLGDELKVERIGQMHQAGSDSLLTAQVFFKMMKASFGGLSCTEME-KFKGDLYGYGTN 696
            DTEFPGVVARPI D    DYQYQTLRCNVDLLKIIQLG++F+NE+GE   GC  WQFNFKF++ EDMYAQDSIDLL ++ I F++H  +GIDV  FGEL++TSGLVLVD V+WISFHSGYDFGYL+KLLT  ALP  E EFFE+LK YFP  FDIK+++ S E  HGGL K+ D+L  +RIG MHQAGSDSL+TA  FF++ +  FGG S  E + KF  +L+G G N
Sbjct:   92 DTEFPGVVARPITDQYAHDYQYQTLRCNVDLLKIIQLGIAFSNEKGEHPPGCVSWQFNFKFNIEEDMYAQDSIDLLMEAGIDFDRHEEEGIDVMYFGELMITSGLVLVDSVRWISFHSGYDFGYLLKLLTCSALPGGEQEFFEVLKIYFPYYFDIKYMVHSTE-LHGGLQKIADDLNCQRIGPMHQAGSDSLITAATFFRLSEERFGGPSSVEKDHKFVNELFGLGGN 318          
BLAST of mRNA_P-wetherbeei_contig1907.2.1 vs. uniprot
Match: A0A507CQN0_9FUNG (Poly(A)-specific ribonuclease n=2 Tax=Synchytrium TaxID=286114 RepID=A0A507CQN0_9FUNG)

HSP 1 Score: 296 bits (757), Expect = 3.420e-98
Identity = 144/224 (64.29%), Postives = 175/224 (78.12%), Query Frame = 1
Query:   16 DTEFPGVVARPIVDY-TQSDYQYQTLRCNVDLLKIIQLGLSFANEEGEFAEGCCCWQFNFKFSLTEDMYAQDSIDLLKQSDIQFEKHANQGIDVHEFGELLMTSGLVLVDHVKWISFHSGYDFGYLIKLLTSQALPPTEGEFFELLKAYFPCLFDIKFVMMSLENFHGGLNKLGDELKVERIGQMHQAGSDSLLTAQVFFKMMKASFGGLSCTEMEKFKGDLYG 684
            DTEFPGVVARP+ ++ T SDY YQTLRCNVDLLKIIQLGL+FA+E G+   G CCWQFNFKF+L +DMYAQDSIDLL +S I F+KH   GIDV  FGELL++SG VL+D VKWISFHSGYDFGYL+K+LT Q LP  E +FFELLK YFPC++D+KF+M S +N  GGL +L D+L++ R+G  HQAGSDSLLT++ FFKM    F  +   +  K+ G LYG
Sbjct:   36 DTEFPGVVARPVGNFRTSSDYHYQTLRCNVDLLKIIQLGLTFADENGDPPPGVCCWQFNFKFNLNDDMYAQDSIDLLTKSGIDFKKHEEFGIDVEHFGELLISSGFVLLDDVKWISFHSGYDFGYLLKVLTCQPLPSEESDFFELLKIYFPCIYDVKFLMKSCKNLKGGLQELADDLQISRVGPQHQAGSDSLLTSKAFFKMRSTFFDNV--VDDTKYLGVLYG 257          
BLAST of mRNA_P-wetherbeei_contig1907.2.1 vs. uniprot
Match: A0A7S2F743_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F743_9STRA)

HSP 1 Score: 295 bits (754), Expect = 6.450e-97
Identity = 141/227 (62.11%), Postives = 176/227 (77.53%), Query Frame = 1
Query:   16 DTEFPGVVARPIVDYTQSDYQYQTLRCNVDLLKIIQLGLSFANEEGEFAEGCCCWQFNFKFSLTEDMYAQDSIDLLKQSDIQFEKHANQGIDVHEFGELLMTSGLVLVDHVKWISFHSGYDFGYLIKLLTSQALPPTEGEFFELLKAYFPCLFDIKFVMMSLENFHGGLNKLGDELKVERIGQMHQAGSDSLLTAQVFFKMMKASFGGLSCTEMEKFKGDLYGYGTN 696
            DTEFPGVVARPI D   +DYQYQTLRCNVDLLKIIQLG++  NE+G+  + C  WQFNFKF+L EDMYAQDSIDLLK++ I F++H  +GIDV+ FGEL+ TSGLVLV++V+WISFHSGYDFGYL+KLLT  ALP  E EFFELLK YFP L+DIKF++  + + HGGL K+ D+L  +RIG MHQAGSD+LLTA  +FK+        +    +K++ +L+G G N
Sbjct:   64 DTEFPGVVARPITDQYANDYQYQTLRCNVDLLKIIQLGIALVNEKGDHPDDCVAWQFNFKFNLQEDMYAQDSIDLLKEAGIDFKRHETEGIDVNYFGELMTTSGLVLVENVRWISFHSGYDFGYLLKLLTCVALPSNESEFFELLKFYFPYLYDIKFMINGMNDLHGGLQKIADDLHAQRIGPMHQAGSDALLTADTYFKLCARLESDSAQDYDQKYENELFGLGGN 290          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1907.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z498_9STRA7.980e-12277.09Poly(A)-specific ribonuclease n=1 Tax=Tribonema mi... [more]
A0A836C813_9STRA8.110e-11674.12Poly(A)-specific ribonuclease n=1 Tax=Tribonema mi... [more]
A0A7S2V6J5_9STRA7.230e-11269.30Poly(A)-specific ribonuclease (Fragment) n=1 Tax=F... [more]
D8LIU5_ECTSI2.440e-10265.53Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus s... [more]
W7TF71_9STRA3.170e-10264.76Poly(A)-specific ribonuclease n=1 Tax=Nannochlorop... [more]
A0A6H5JI77_9PHAE5.180e-10265.53Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus s... [more]
K8YSH1_NANGC3.230e-10064.76Poly(A)-specific ribonuclease n=2 Tax=Monodopsidac... [more]
A0A7S2SP02_9STRA7.950e-9965.35Poly(A)-specific ribonuclease n=1 Tax=Rhizochromul... [more]
A0A507CQN0_9FUNG3.420e-9864.29Poly(A)-specific ribonuclease n=2 Tax=Synchytrium ... [more]
A0A7S2F743_9STRA6.450e-9762.11Poly(A)-specific ribonuclease n=1 Tax=Dictyocha sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1907contigP-wetherbeei_contig1907:2926..5713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LIU5
Preferred nameCNOT8
PFAMsCAF1
Model size714
Max annot lvl2759|Eukaryota
KEGG koko:K12581
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000122,GO:0000175,GO:0000278,GO:0000288,GO:0000289,GO:0000290,GO:0000291,GO:0000932,GO:0000956,GO:0000988,GO:0000989,GO:0001076,GO:0001191,GO:0001932,GO:0001959,GO:0001960,GO:0002252,GO:0002376,GO:0002682,GO:0002683,GO:0003006,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004535,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005937,GO:0005975,GO:0006139,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006974,GO:0006977,GO:0006996,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0008134,GO:0008150,GO:0008152,GO:0008284,GO:0008285,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010648,GO:0010948,GO:0016043,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017148,GO:0018130,GO:0018995,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019439,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023057,GO:0030014,GO:0030015,GO:0030154,GO:0030330,GO:0030427,GO:0031047,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031399,GO:0031570,GO:0031571,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033554,GO:0033643,GO:0033646,GO:0033647,GO:0033648,GO:0033962,GO:0034243,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035194,GO:0035195,GO:0035556,GO:0035770,GO:0036464,GO:0040029,GO:0042025,GO:0042127,GO:0042325,GO:0042509,GO:0042770,GO:0042995,GO:0043167,GO:0043169,GO:0043170,GO:0043186,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043332,GO:0043656,GO:0043657,GO:0043900,GO:0043902,GO:0043903,GO:0043928,GO:0043933,GO:0044085,GO:0044094,GO:0044215,GO:0044216,GO:0044217,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045069,GO:0045070,GO:0045088,GO:0045495,GO:0045786,GO:0045787,GO:0045824,GO:0045892,GO:0045893,GO:0045930,GO:0045934,GO:0045935,GO:0045944,GO:0046425,GO:0046483,GO:0046700,GO:0046872,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048583,GO:0048585,GO:0048609,GO:0048856,GO:0048869,GO:0050730,GO:0050776,GO:0050777,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051286,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0060211,GO:0060213,GO:0060255,GO:0060293,GO:0060338,GO:0060339,GO:0060759,GO:0060761,GO:0061013,GO:0061014,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071156,GO:0071158,GO:0071704,GO:0071826,GO:0071840,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0075341,GO:0080090,GO:0080134,GO:0090068,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097659,GO:0098542,GO:0120025,GO:0120038,GO:0140098,GO:0140110,GO:1900151,GO:1900153,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902400,GO:1902402,GO:1902403,GO:1902531,GO:1902679,GO:1902680,GO:1902806,GO:1902807,GO:1903047,GO:1903311,GO:1903313,GO:1903506,GO:1903507,GO:1903508,GO:1903900,GO:1903902,GO:1904892,GO:1990904,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2001141
Exons6
Evalue4e-103
EggNOG OGsCOG5228@1|root,KOG0304@2759|Eukaryota
Descriptionexonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
Cds size714
COG categoryA
BRITEko00000,ko00001,ko03019
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1907.2.1prot_P-wetherbeei_contig1907.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1907 2926..5713 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186162.9642258-CDS-P-wetherbeei_contig1907:2925..30361683186162.9642258-CDS-P-wetherbeei_contig1907:2925..3036Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1907 2926..3036 -
1683186162.9735565-CDS-P-wetherbeei_contig1907:3222..32791683186162.9735565-CDS-P-wetherbeei_contig1907:3222..3279Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1907 3223..3279 -
1683186162.9825552-CDS-P-wetherbeei_contig1907:3734..38691683186162.9825552-CDS-P-wetherbeei_contig1907:3734..3869Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1907 3735..3869 -
1683186162.9915543-CDS-P-wetherbeei_contig1907:4355..44841683186162.9915543-CDS-P-wetherbeei_contig1907:4355..4484Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1907 4356..4484 -
1683186163.0008168-CDS-P-wetherbeei_contig1907:4736..48521683186163.0008168-CDS-P-wetherbeei_contig1907:4736..4852Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1907 4737..4852 -
1683186163.0094807-CDS-P-wetherbeei_contig1907:5547..57131683186163.0094807-CDS-P-wetherbeei_contig1907:5547..5713Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1907 5548..5713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1907.2.1

>prot_P-wetherbeei_contig1907.2.1 ID=prot_P-wetherbeei_contig1907.2.1|Name=mRNA_P-wetherbeei_contig1907.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=238bp
CCRLQDTEFPGVVARPIVDYTQSDYQYQTLRCNVDLLKIIQLGLSFANEE
GEFAEGCCCWQFNFKFSLTEDMYAQDSIDLLKQSDIQFEKHANQGIDVHE
FGELLMTSGLVLVDHVKWISFHSGYDFGYLIKLLTSQALPPTEGEFFELL
KAYFPCLFDIKFVMMSLENFHGGLNKLGDELKVERIGQMHQAGSDSLLTA
QVFFKMMKASFGGLSCTEMEKFKGDLYGYGTNAYGRR*
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mRNA from alignment at P-wetherbeei_contig1907:2926..5713-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1907.2.1 ID=mRNA_P-wetherbeei_contig1907.2.1|Name=mRNA_P-wetherbeei_contig1907.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2788bp|location=Sequence derived from alignment at P-wetherbeei_contig1907:2926..5713- (Phaeothamnion wetherbeei SAG_119_79)
TGCTGTCGGCTGCAGGACACGGAGTTCCCGGGCGTGGTGGCAAGGCCGAT CGTGGACTACACGCAAAGCGACTACCAGTACCAGACGCTCCGCTGCAACG TCGACCTGCTCAAGATCATCCAGCTCGGACTCTCCTTCGCCAACGAGGAG GGCGAGTTCGCTGAAGGTGAGATGGGAGGCGACTGAAATAGCCGAAACCG CGCCTTCCTGAAACTGCCGAAACCGCTCTCTGGAGGTGCCAGCGTTACGT GCGGCCCGCGGTGTAGTTCTTAGCTGGACGCTGCCTTTCAATCAATTGCA TGCGTTCGAGTTTGGGTCGGTTCAATCTTTGTGGGGAGGCTCGCGTTTCG GGCTTCTTGTCAGTTTCCCTGTGGTCAGTTTCTTGCCGGTTTCTGGCAGT CATGTGAGGCCATTTTGGGTGCTTCTGGTCGTTCGGCTGCTCATGCTAGG TTCGTATTGGCACCGGGTGCTGTTGGGAGGATTTCTGGCCTGTCGAGGAT TGTTTTGGTCGCGGAGCTCTTTCTTTACTTTCATTTTCTACTACAGCGTT TACGACAAATTTGACGTGGGTGGGCTAGAAATTTGCAAGAACAGGAGGCG CATACCAACTGATGTGGGACGGCTCTGGCCTCAGAAACAGTGTTTCCTGC CCCCAGCGTGACATCTGGCATCAAATACTTATCGGGCTTCGCCCTTCTCT GGCGCCGCCACTACCATGATCGTGTGGTTGCTTGTGGTTGTGTGTGTGCG TCGCTGTGAAATGATGCGCTGTGAAATGATGTCGGTAACGGCGTGGATGA CGGTAACGGCGACTGTTATGGTAATCGCAACGGTTATGGGCGGATGGCGC AAAACACGCAGGGTGCTGTTGCTGGCAGTTCAACTTCAAATTTTCCCTGA CAGAAGACATGTACGCCCAGGACTCCATTGACCTCCTGAAGCAAAGCGAC ATTCAGTTCGAGAAGCACGCCAATCAAGTCAGTCAGCCAAGTCGCCGTCT GTCTACGTCGCGGCCGGGTTTCGGGGAATCTTGTTATCCGCAGGCGACGA GGCCATTGTTGTTTTGCCTTACCTCATGTCTTTGTGACATTAGGGCGATC TCTCTGCTACCTTTTACTGTCAATATCCGATCGTATCGACGGACAGTAAC AATTTCCGGTATCTCCTTCGCTTTTTCTACCTGTGTTTCCATGATCCATC GTTGTGTCGTGCTGCACTGTTGCTGTCAGGGTATTGACGTGCACGAGTTC GGGGAGCTGCTGATGACATCGGGGCTGGTGCTGGTGGACCACGTCAAGTG GATTTCCTTCCACAGCGGCTACGACTTCGGATACCTCATCAAGCTCCTCA CCAGCCAGGTGAGACTTCTTGCGCGGAGAAGACAAGACGCTTGTCTTGTG GAGAGATTAGGTTTGGGTATTAATTTGGTTCAGTGGAACAGCTGGTAACC CTCGAAAAAGAGGTTTGGCGCCCGGCAGTTGTGCCGGGGCCGCTGCAGGA ACCGAAATGGTTGGCCGTTTTTGTGTCGTCCAGATAGCGGGCGCACTTCT TCCCCCCAGCATTCTGAGAGACCCGGAGAAGATAAGATTGCTCCTCCTGC TTATGATTCTCGACGTCTACGGTCGATCGCGTAATTGGTGCGCTGGCTCG CTCCACCTTTGCCCCTTCACACCCTAAAGCCTGGGTCCCTTCCCTAAACC GACCTGTCTACGGCCTTTTCCTGGGATCGCGTTTTGTCCCTCCGTCTGTC CGGGCGGCAATCCACAACCAAAAACTGCCAACGATCCACAACCGGCAACC GATAAATTGCCACCACAAACAAACAAACGGCGACAAACGAACAGGCGCTG CCGCCGACGGAGGGCGAGTTCTTCGAGCTGCTCAAGGCGTACTTTCCGTG CCTCTTCGACATAAAGTTCGTCATGATGAGCCTCGAGAACTTCCACGGCG GCCTCAACAAACTCGGCGACGAACTCAAGGTATGTGGCCGATCGGCCGCC CGGCCGGCGGCGTAGCACATTGGCCGTGTAGGCTGATTTTTATTGTTGGG GCCAGGATCGCTCGCTTCCTCGTTCCCGGAGAGTTGTCCAGTTTTTTTTT GCGAGGCCAGGCGTAGGTGGTGTGGGCAGCGGTCTCGCCGTCCTCCGGCG GCATTGTCATCAATAATAAAAGTTTGATTAGTCGTCGGTGCAGACGCAAT CCGAATGGAGCTGCTGAGGCCCTCTGTTGCTCTGTTGTGGCGGCGTCCAA AAGGAATTTTCTATGTTGCTCGTGGCCGCGGTTGAAGTACACGCCAATTT AAGATGATGTTTGCAATGGCGGGCATAGTAGGAATCTATTAATCGGCGGG ACAGGTGCTGTGGAACCCTGCCCTCTGGTCTGCCTCTTATGGCAACCTTT GCTTTTAATTTGCCTTTCACGGCGGTGGCGGCAGGTCGAGCGCATCGGGC AGATGCACCAAGCAGGAAGCGATTCGTTGCTCACCGCCCAGGTGCGTCGC TCGGGAAAGGTCCAGGATCACAACGTTTCATACTGTGCATTTTTTTCCCC CACACTGTTGGCGATTGTGGTGCTGATGCGTCGTCGGTCGTGAGACTTCG CCTCCAAAAGCGGCCTGAAGTTTAACTGGAAAAAACGCGGCCCTGGGTAT GCGATGCCGCTTTGCCGCCTGTAACAGGTCTTCTTCAAGATGATGAAGGC GTCTTTCGGAGGCCTCAGTTGCACGGAGATGGAGAAGTTTAAGGGAGATC TGTACGGATACGGCACCAACGCGTACGGCCGGCGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1907:2926..5713-

>mRNA_P-wetherbeei_contig1907.2.1 ID=mRNA_P-wetherbeei_contig1907.2.1|Name=mRNA_P-wetherbeei_contig1907.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=714bp|location=Sequence derived from alignment at P-wetherbeei_contig1907:2926..5713- (Phaeothamnion wetherbeei SAG_119_79)
TGCTGTCGGCTGCAGGACACGGAGTTCCCGGGCGTGGTGGCAAGGCCGAT
CGTGGACTACACGCAAAGCGACTACCAGTACCAGACGCTCCGCTGCAACG
TCGACCTGCTCAAGATCATCCAGCTCGGACTCTCCTTCGCCAACGAGGAG
GGCGAGTTCGCTGAAGGGTGCTGTTGCTGGCAGTTCAACTTCAAATTTTC
CCTGACAGAAGACATGTACGCCCAGGACTCCATTGACCTCCTGAAGCAAA
GCGACATTCAGTTCGAGAAGCACGCCAATCAAGGTATTGACGTGCACGAG
TTCGGGGAGCTGCTGATGACATCGGGGCTGGTGCTGGTGGACCACGTCAA
GTGGATTTCCTTCCACAGCGGCTACGACTTCGGATACCTCATCAAGCTCC
TCACCAGCCAGGCGCTGCCGCCGACGGAGGGCGAGTTCTTCGAGCTGCTC
AAGGCGTACTTTCCGTGCCTCTTCGACATAAAGTTCGTCATGATGAGCCT
CGAGAACTTCCACGGCGGCCTCAACAAACTCGGCGACGAACTCAAGGTCG
AGCGCATCGGGCAGATGCACCAAGCAGGAAGCGATTCGTTGCTCACCGCC
CAGGTCTTCTTCAAGATGATGAAGGCGTCTTTCGGAGGCCTCAGTTGCAC
GGAGATGGAGAAGTTTAAGGGAGATCTGTACGGATACGGCACCAACGCGT
ACGGCCGGCGGTGA
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