mRNA_P-wetherbeei_contig1907.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1907.2.1 vs. uniprot
Match: A0A835Z498_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z498_9STRA) HSP 1 Score: 359 bits (922), Expect = 7.980e-122 Identity = 175/227 (77.09%), Postives = 196/227 (86.34%), Query Frame = 1
Query: 16 DTEFPGVVARPIVDYTQSDYQYQTLRCNVDLLKIIQLGLSFANEEGEFAEGCCCWQFNFKFSLTEDMYAQDSIDLLKQSDIQFEKHANQGIDVHEFGELLMTSGLVLVDHVKWISFHSGYDFGYLIKLLTSQALPPTEGEFFELLKAYFPCLFDIKFVMMSLENFHGGLNKLGDELKVERIGQMHQAGSDSLLTAQVFFKMMKASFGGLSCTEMEKFKGDLYGYGTN 696
DTEFPGVVARPI D+ QSDYQYQTLRCNVDLLKIIQLGLSFANE+GEFAEGCCCWQFNFKFSL EDMYAQDSIDLLKQS I F++H +GIDV EFGELLMTSGLVLVD+V W+SFHSGYDFGYL+K+LTS ALP E EFF LLK YFP L+DIK++M S + FHGGLNKLGD+L VERIGQ HQAGSDSLLTAQVFFK+++ F G+S EK+ +L+GYG N
Sbjct: 62 DTEFPGVVARPIGDFGQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAEGCCCWQFNFKFSLGEDMYAQDSIDLLKQSGINFDQHEARGIDVLEFGELLMTSGLVLVDNVTWVSFHSGYDFGYLLKVLTSCALPGQEKEFFHLLKLYFPRLYDIKYLMASQDGFHGGLNKLGDDLSVERIGQKHQAGSDSLLTAQVFFKIVETKFNGMSNLSREKYNSELFGYGNN 288
BLAST of mRNA_P-wetherbeei_contig1907.2.1 vs. uniprot
Match: A0A836C813_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C813_9STRA) HSP 1 Score: 344 bits (883), Expect = 8.110e-116 Identity = 169/228 (74.12%), Postives = 193/228 (84.65%), Query Frame = 1
Query: 16 DTEFPGVVARPIVDYTQSDYQYQTLRCNVDLLKIIQLGLSFANEEGEFAEGCCCWQFNFKFSLTEDMYAQDSIDLLKQSDIQFEKHANQGIDVHEFGELLMTSGLVLVDHVKWISFHSGYDFGYLI-KLLTSQALPPTEGEFFELLKAYFPCLFDIKFVMMSLENFHGGLNKLGDELKVERIGQMHQAGSDSLLTAQVFFKMMKASFGGLSCTEMEKFKGDLYGYGTN 696
DTEFPGVVARP+ D +QSDYQYQTLRCNVDLLKIIQLGLSFANE+GEFAEGCCCWQFNFKFSL EDMYAQDSIDLLKQS ++F H +GIDV +FGELL+ SGLVLVD+V WISFHSGYDFGYL+ K+LTS ALP E +FF LLK YFP L+DIK++M + + FHGGLNKLGD+L VERIGQ HQAGSDSLLTAQVFFK++ F G+S EK+ +L+GYG N
Sbjct: 58 DTEFPGVVARPLGDVSQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAEGCCCWQFNFKFSLDEDMYAQDSIDLLKQSGLEFRDHCARGIDVIDFGELLIASGLVLVDNVTWISFHSGYDFGYLLGKVLTSSALPGQEKDFFTLLKMYFPRLYDIKYLMANQDGFHGGLNKLGDDLAVERIGQKHQAGSDSLLTAQVFFKIVDTKFNGMSNLSREKYNLELFGYGNN 285
BLAST of mRNA_P-wetherbeei_contig1907.2.1 vs. uniprot
Match: A0A7S2V6J5_9STRA (Poly(A)-specific ribonuclease (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6J5_9STRA) HSP 1 Score: 332 bits (850), Expect = 7.230e-112 Identity = 158/228 (69.30%), Postives = 188/228 (82.46%), Query Frame = 1
Query: 16 DTEFPGVVARPIVDYTQSDYQYQTLRCNVDLLKIIQLGLSFANEEGEFAEGCCCWQFNFKFSLTEDMYAQDSIDLLKQSDIQFEKHANQGIDVHEFGELLMTSGLVLVDHVKWISFHSGYDFGYLIKLLTSQALPPTEGEFFELLKAYFPCLFDIKFVMMSLENFHGGLNKLGDELKVERIGQMHQAGSDSLLTAQVFFKMMKASFG-GLSCTEMEKFKGDLYGYGTN 696
DTEFPGVVARP DY SDY YQTLRCNVDLLKIIQLG++FA++ GE AEGC CWQFNFKF+L+EDMYAQDSIDLLK S I+F +H GIDVH FGELL+TSGLVL+D+VKWISFHSGYDFGYL+K+LT QALP E FFELL+ YFPC++DIK++M + HGGLNKL +++KVERIG MHQAGSDSLLTAQ FF++++ F +S + KF+G+LYG G N
Sbjct: 39 DTEFPGVVARPASDYNSSDYMYQTLRCNVDLLKIIQLGIAFADKNGEIAEGCACWQFNFKFNLSEDMYAQDSIDLLKASGIEFTRHEKYGIDVHHFGELLITSGLVLMDNVKWISFHSGYDFGYLLKILTCQALPAEEAHFFELLRLYFPCIYDIKYLMTICDGIHGGLNKLAEDIKVERIGPMHQAGSDSLLTAQAFFRLIELRFSVPISEWDDSKFRGELYGLGGN 266
BLAST of mRNA_P-wetherbeei_contig1907.2.1 vs. uniprot
Match: D8LIU5_ECTSI (Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU5_ECTSI) HSP 1 Score: 311 bits (798), Expect = 2.440e-102 Identity = 154/235 (65.53%), Postives = 183/235 (77.87%), Query Frame = 1
Query: 16 DTEFPGVVARPIVDYTQSDYQYQTLRCNVDLLKIIQLGLSFANEEGEFAE-GCCCWQFNFKFSLTEDMYAQDSIDLLKQSDIQFEKHANQGIDVHEFGELLMTSGLVLVDHVKWISFHSGYDFGYLIKLLTSQALPPTEGEFFELLKAYFPCLFDIKFVMMSLENFHGGLNKLGDELKVERIGQMHQAGSDSLLTAQVFFKMMKASFGGLSCTEMEK----FKGDLYGYGTNAYG 705
DTEFPGVVARP+ D+ Q D+QYQTLRCNVD+LK+IQLGLSFANE+GE E GCC WQFNF F+L+EDMYA DSI LLK S I F+ H +GID+ +FGELLMTSGLVL+ +V W+SFHSGYDFGYLIKLLT LP E +FF+LL+ YFP ++DIK+++ S + FHGGLNKL D+LKVERIG MHQAGSDSLLT QVF K+ F G++ + K F G LYGYG N G
Sbjct: 85 DTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNLSEDMYAHDSIQLLKNSGIDFQGHERRGIDLQDFGELLMTSGLVLLPNVTWLSFHSGYDFGYLIKLLTCSNLPTQESDFFDLLQLYFPKIYDIKYLVSSQDGFHGGLNKLADDLKVERIGPMHQAGSDSLLTEQVFLKVADVYFNGVANLDQGKSRGKFAGQLYGYGGNQTG 319
BLAST of mRNA_P-wetherbeei_contig1907.2.1 vs. uniprot
Match: W7TF71_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TF71_9STRA) HSP 1 Score: 310 bits (793), Expect = 3.170e-102 Identity = 147/227 (64.76%), Postives = 180/227 (79.30%), Query Frame = 1
Query: 16 DTEFPGVVARPIVDYTQSDYQYQTLRCNVDLLKIIQLGLSFANEEGEFAEGCCCWQFNFKFSLTEDMYAQDSIDLLKQSDIQFEKHANQGIDVHEFGELLMTSGLVLVDHVKWISFHSGYDFGYLIKLLTSQALPPTEGEFFELLKAYFPCLFDIKFVMMSLENFHGGLNKLGDELKVERIGQMHQAGSDSLLTAQVFFKMMKASFGGLSCTEMEKFKGDLYGYGTN 696
DTEFPGVVARP+ D + SDYQY+TL+CNVDLLKIIQLGLSFA+ +G C WQFNF+FSL++D+YA+DSI+LLKQS I F KH + GIDV FGELLMTSGLVL+D V+WISFHSGYDFGYL+K+LT ALP E FF+LL+ YFPC +DIK++M + + HGGL ++ +EL V R+G MHQAGSDSLLTAQ FF++ SF GL+ EKFKG+L+G G N
Sbjct: 63 DTEFPGVVARPVGDVSASDYQYKTLKCNVDLLKIIQLGLSFADSDGNSPPECPTWQFNFRFSLSDDIYAEDSIELLKQSGIDFSKHESHGIDVFRFGELLMTSGLVLMDEVRWISFHSGYDFGYLLKVLTCAALPSDENGFFDLLRTYFPCFYDIKYLMTACQGLHGGLQRIAEELSVARVGPMHQAGSDSLLTAQTFFRLCAVSFDGLNNLSDEKFKGELFGLGHN 289
BLAST of mRNA_P-wetherbeei_contig1907.2.1 vs. uniprot
Match: A0A6H5JI77_9PHAE (Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI77_9PHAE) HSP 1 Score: 313 bits (802), Expect = 5.180e-102 Identity = 154/235 (65.53%), Postives = 185/235 (78.72%), Query Frame = 1
Query: 16 DTEFPGVVARPIVDYTQSDYQYQTLRCNVDLLKIIQLGLSFANEEGEFAE-GCCCWQFNFKFSLTEDMYAQDSIDLLKQSDIQFEKHANQGIDVHEFGELLMTSGLVLVDHVKWISFHSGYDFGYLIKLLTSQALPPTEGEFFELLKAYFPCLFDIKFVMMSLENFHGGLNKLGDELKVERIGQMHQAGSDSLLTAQVFFKMMKASFGGLSCTEMEK----FKGDLYGYGTNAYG 705
DTEFPGVVARP+ D+ Q D+QYQTLRCNVD+LK+IQLGLSFANE+GE E GCC WQFNF F+L+EDMYA DSI+LLK S I F+ H +GID+ +FGELLMTSGLVL+ +V W+SFHSGYDFGYLIKLLT LP E +FF+LL+ YFP ++DIK+++ S + FHGGLNKL D+LKVERIG MHQAGSDSLLT QVF K+ F G++ ++ K F G LYGYG N G
Sbjct: 88 DTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNLSEDMYAHDSIELLKNSGIDFQGHERRGIDLQDFGELLMTSGLVLLPNVTWLSFHSGYDFGYLIKLLTCSNLPTQESDFFDLLQLYFPKIYDIKYLVSSQDGFHGGLNKLADDLKVERIGPMHQAGSDSLLTEQVFLKVADVYFNGVANLDLGKSRGKFAGQLYGYGGNQTG 322
BLAST of mRNA_P-wetherbeei_contig1907.2.1 vs. uniprot
Match: K8YSH1_NANGC (Poly(A)-specific ribonuclease n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YSH1_NANGC) HSP 1 Score: 310 bits (793), Expect = 3.230e-100 Identity = 147/227 (64.76%), Postives = 180/227 (79.30%), Query Frame = 1
Query: 16 DTEFPGVVARPIVDYTQSDYQYQTLRCNVDLLKIIQLGLSFANEEGEFAEGCCCWQFNFKFSLTEDMYAQDSIDLLKQSDIQFEKHANQGIDVHEFGELLMTSGLVLVDHVKWISFHSGYDFGYLIKLLTSQALPPTEGEFFELLKAYFPCLFDIKFVMMSLENFHGGLNKLGDELKVERIGQMHQAGSDSLLTAQVFFKMMKASFGGLSCTEMEKFKGDLYGYGTN 696
DTEFPGVVARP+ D + SDYQY+TL+CNVDLLKIIQLGLSFA+ +G C WQFNF+FSL++D+YA+DSI+LLKQS I F KH + GIDV FGELLMTSGLVL+D V+WISFHSGYDFGYL+K+LT ALP E FF+LL+ YFPC +DIK++M + + HGGL ++ +EL V R+G MHQAGSDSLLTAQ FF++ SF GL+ EKFKG+L+G G N
Sbjct: 216 DTEFPGVVARPVGDVSASDYQYKTLKCNVDLLKIIQLGLSFADSDGNSPPECPTWQFNFRFSLSDDIYAEDSIELLKQSGIDFSKHESHGIDVFRFGELLMTSGLVLMDEVRWISFHSGYDFGYLLKVLTCAALPSDENGFFDLLRTYFPCFYDIKYLMTACQGLHGGLQRIAEELSVARVGPMHQAGSDSLLTAQTFFRLCAVSFDGLNNLSDEKFKGELFGLGHN 442
BLAST of mRNA_P-wetherbeei_contig1907.2.1 vs. uniprot
Match: A0A7S2SP02_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP02_9STRA) HSP 1 Score: 300 bits (769), Expect = 7.950e-99 Identity = 149/228 (65.35%), Postives = 178/228 (78.07%), Query Frame = 1
Query: 16 DTEFPGVVARPIVDYTQSDYQYQTLRCNVDLLKIIQLGLSFANEEGEFAEGCCCWQFNFKFSLTEDMYAQDSIDLLKQSDIQFEKHANQGIDVHEFGELLMTSGLVLVDHVKWISFHSGYDFGYLIKLLTSQALPPTEGEFFELLKAYFPCLFDIKFVMMSLENFHGGLNKLGDELKVERIGQMHQAGSDSLLTAQVFFKMMKASFGGLSCTEME-KFKGDLYGYGTN 696
DTEFPGVVARPI D DYQYQTLRCNVDLLKIIQLG++F+NE+GE GC WQFNFKF++ EDMYAQDSIDLL ++ I F++H +GIDV FGEL++TSGLVLVD V+WISFHSGYDFGYL+KLLT ALP E EFFE+LK YFP FDIK+++ S E HGGL K+ D+L +RIG MHQAGSDSL+TA FF++ + FGG S E + KF +L+G G N
Sbjct: 92 DTEFPGVVARPITDQYAHDYQYQTLRCNVDLLKIIQLGIAFSNEKGEHPPGCVSWQFNFKFNIEEDMYAQDSIDLLMEAGIDFDRHEEEGIDVMYFGELMITSGLVLVDSVRWISFHSGYDFGYLLKLLTCSALPGGEQEFFEVLKIYFPYYFDIKYMVHSTE-LHGGLQKIADDLNCQRIGPMHQAGSDSLITAATFFRLSEERFGGPSSVEKDHKFVNELFGLGGN 318
BLAST of mRNA_P-wetherbeei_contig1907.2.1 vs. uniprot
Match: A0A507CQN0_9FUNG (Poly(A)-specific ribonuclease n=2 Tax=Synchytrium TaxID=286114 RepID=A0A507CQN0_9FUNG) HSP 1 Score: 296 bits (757), Expect = 3.420e-98 Identity = 144/224 (64.29%), Postives = 175/224 (78.12%), Query Frame = 1
Query: 16 DTEFPGVVARPIVDY-TQSDYQYQTLRCNVDLLKIIQLGLSFANEEGEFAEGCCCWQFNFKFSLTEDMYAQDSIDLLKQSDIQFEKHANQGIDVHEFGELLMTSGLVLVDHVKWISFHSGYDFGYLIKLLTSQALPPTEGEFFELLKAYFPCLFDIKFVMMSLENFHGGLNKLGDELKVERIGQMHQAGSDSLLTAQVFFKMMKASFGGLSCTEMEKFKGDLYG 684
DTEFPGVVARP+ ++ T SDY YQTLRCNVDLLKIIQLGL+FA+E G+ G CCWQFNFKF+L +DMYAQDSIDLL +S I F+KH GIDV FGELL++SG VL+D VKWISFHSGYDFGYL+K+LT Q LP E +FFELLK YFPC++D+KF+M S +N GGL +L D+L++ R+G HQAGSDSLLT++ FFKM F + + K+ G LYG
Sbjct: 36 DTEFPGVVARPVGNFRTSSDYHYQTLRCNVDLLKIIQLGLTFADENGDPPPGVCCWQFNFKFNLNDDMYAQDSIDLLTKSGIDFKKHEEFGIDVEHFGELLISSGFVLLDDVKWISFHSGYDFGYLLKVLTCQPLPSEESDFFELLKIYFPCIYDVKFLMKSCKNLKGGLQELADDLQISRVGPQHQAGSDSLLTSKAFFKMRSTFFDNV--VDDTKYLGVLYG 257
BLAST of mRNA_P-wetherbeei_contig1907.2.1 vs. uniprot
Match: A0A7S2F743_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F743_9STRA) HSP 1 Score: 295 bits (754), Expect = 6.450e-97 Identity = 141/227 (62.11%), Postives = 176/227 (77.53%), Query Frame = 1
Query: 16 DTEFPGVVARPIVDYTQSDYQYQTLRCNVDLLKIIQLGLSFANEEGEFAEGCCCWQFNFKFSLTEDMYAQDSIDLLKQSDIQFEKHANQGIDVHEFGELLMTSGLVLVDHVKWISFHSGYDFGYLIKLLTSQALPPTEGEFFELLKAYFPCLFDIKFVMMSLENFHGGLNKLGDELKVERIGQMHQAGSDSLLTAQVFFKMMKASFGGLSCTEMEKFKGDLYGYGTN 696
DTEFPGVVARPI D +DYQYQTLRCNVDLLKIIQLG++ NE+G+ + C WQFNFKF+L EDMYAQDSIDLLK++ I F++H +GIDV+ FGEL+ TSGLVLV++V+WISFHSGYDFGYL+KLLT ALP E EFFELLK YFP L+DIKF++ + + HGGL K+ D+L +RIG MHQAGSD+LLTA +FK+ + +K++ +L+G G N
Sbjct: 64 DTEFPGVVARPITDQYANDYQYQTLRCNVDLLKIIQLGIALVNEKGDHPDDCVAWQFNFKFNLQEDMYAQDSIDLLKEAGIDFKRHETEGIDVNYFGELMTTSGLVLVENVRWISFHSGYDFGYLLKLLTCVALPSNESEFFELLKFYFPYLYDIKFMINGMNDLHGGLQKIADDLHAQRIGPMHQAGSDALLTADTYFKLCARLESDSAQDYDQKYENELFGLGGN 290 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1907.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1907.2.1 >prot_P-wetherbeei_contig1907.2.1 ID=prot_P-wetherbeei_contig1907.2.1|Name=mRNA_P-wetherbeei_contig1907.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=238bp CCRLQDTEFPGVVARPIVDYTQSDYQYQTLRCNVDLLKIIQLGLSFANEEback to top mRNA from alignment at P-wetherbeei_contig1907:2926..5713- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1907.2.1 ID=mRNA_P-wetherbeei_contig1907.2.1|Name=mRNA_P-wetherbeei_contig1907.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2788bp|location=Sequence derived from alignment at P-wetherbeei_contig1907:2926..5713- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1907:2926..5713- >mRNA_P-wetherbeei_contig1907.2.1 ID=mRNA_P-wetherbeei_contig1907.2.1|Name=mRNA_P-wetherbeei_contig1907.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=714bp|location=Sequence derived from alignment at P-wetherbeei_contig1907:2926..5713- (Phaeothamnion wetherbeei SAG_119_79)back to top |