mRNA_P-wetherbeei_contig19063.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19063.1.1
Unique NamemRNA_P-wetherbeei_contig19063.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19063.1.1 vs. uniprot
Match: A0A7X9KKP9_9ACTN (Long-chain-fatty-acid--CoA ligase n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KKP9_9ACTN)

HSP 1 Score: 302 bits (773), Expect = 2.150e-98
Identity = 140/163 (85.89%), Postives = 148/163 (90.80%), Query Frame = 1
Query:    1 GEVGEIWIRGPQVMKGYWNMPEETAKSITDDGWFRSGDAGYLDADGFLYIHDRVKDMIVSGGENVYPAEVENVLMAHPGIADVAVIGVPHEKWGETAKAVVVKAAGSEVSEEEIIAYSREHLARFKCPTSVDWIDALPRNPSGKILKKDLRAPYWEGRARQVN 489
            GEVGEIWIR PQVM GYWNMPEET K+IT DGWF+SGD GYLDADG+LYIHDRVKDMIVSGGENVYPAEVENVLM HP IADVAVIGVPHEKWGETAKAVVVK  G+EV+E+EII Y+RE LARFKCPT+VDW D LPRNPSGKILKKDLRAPYWEGR R VN
Sbjct:  363 GEVGEIWIRSPQVMIGYWNMPEETEKAITADGWFKSGDVGYLDADGYLYIHDRVKDMIVSGGENVYPAEVENVLMGHPAIADVAVIGVPHEKWGETAKAVVVKKPGAEVTEQEIIDYARERLARFKCPTTVDWADVLPRNPSGKILKKDLRAPYWEGRTRNVN 525          
BLAST of mRNA_P-wetherbeei_contig19063.1.1 vs. uniprot
Match: A0A524B975_9ACTN (Long-chain fatty acid--CoA ligase n=1 Tax=Acidimicrobiales bacterium mtb01 TaxID=1967499 RepID=A0A524B975_9ACTN)

HSP 1 Score: 294 bits (752), Expect = 2.790e-95
Identity = 137/163 (84.05%), Postives = 147/163 (90.18%), Query Frame = 1
Query:    1 GEVGEIWIRGPQVMKGYWNMPEETAKSITDDGWFRSGDAGYLDADGFLYIHDRVKDMIVSGGENVYPAEVENVLMAHPGIADVAVIGVPHEKWGETAKAVVVKAAGSEVSEEEIIAYSREHLARFKCPTSVDWIDALPRNPSGKILKKDLRAPYWEGRARQVN 489
            G VGEIWIR PQVM GYWNMPEETAKSIT DGWFRSGDAGYLDADG+LYIHDRVKDMIVSGGENVYPAEVENVLM+HPGIADVAVIGVP EKWGET KA+VV+  G EV+E+EII ++RE LA+FKCPTSV WID LPRNPSGKILKKDLR PYW GR R+VN
Sbjct:  359 GAVGEIWIRSPQVMLGYWNMPEETAKSITKDGWFRSGDAGYLDADGYLYIHDRVKDMIVSGGENVYPAEVENVLMSHPGIADVAVIGVPDEKWGETPKAIVVRKPGVEVAEQEIIDFARERLAKFKCPTSVTWIDMLPRNPSGKILKKDLREPYWAGRERRVN 521          
BLAST of mRNA_P-wetherbeei_contig19063.1.1 vs. uniprot
Match: A0A7W1CKW2_9ACTN (Long-chain-fatty-acid--CoA ligase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1CKW2_9ACTN)

HSP 1 Score: 288 bits (738), Expect = 3.460e-93
Identity = 133/163 (81.60%), Postives = 146/163 (89.57%), Query Frame = 1
Query:    1 GEVGEIWIRGPQVMKGYWNMPEETAKSITDDGWFRSGDAGYLDADGFLYIHDRVKDMIVSGGENVYPAEVENVLMAHPGIADVAVIGVPHEKWGETAKAVVVKAAGSEVSEEEIIAYSREHLARFKCPTSVDWIDALPRNPSGKILKKDLRAPYWEGRARQVN 489
            GEVGEIWIR PQVMKGYWN    T ++I DDGWFRSGDAG+LDADG+L+IHDRVKDMIVSGGENVYPAEVENVLM HP IADVAVIGVPHE+WGETAKAVVV A G+EV  +++I Y+RE LARFKCPTSVD +DALPRNPSGK+LKKDLRAPYWEGR RQVN
Sbjct:  358 GEVGEIWIRSPQVMKGYWNDEAATREAIDDDGWFRSGDAGFLDADGYLFIHDRVKDMIVSGGENVYPAEVENVLMGHPAIADVAVIGVPHERWGETAKAVVVAAGGAEVDADDVIGYARERLARFKCPTSVDVVDALPRNPSGKVLKKDLRAPYWEGRERQVN 520          
BLAST of mRNA_P-wetherbeei_contig19063.1.1 vs. uniprot
Match: A0A6N2DP17_9ACTN (Long-chain-fatty-acid--CoA ligase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DP17_9ACTN)

HSP 1 Score: 286 bits (732), Expect = 3.250e-92
Identity = 128/163 (78.53%), Postives = 146/163 (89.57%), Query Frame = 1
Query:    1 GEVGEIWIRGPQVMKGYWNMPEETAKSITDDGWFRSGDAGYLDADGFLYIHDRVKDMIVSGGENVYPAEVENVLMAHPGIADVAVIGVPHEKWGETAKAVVVKAAGSEVSEEEIIAYSREHLARFKCPTSVDWIDALPRNPSGKILKKDLRAPYWEGRARQVN 489
            GEVGEIW+R PQVMKGYWNMPE TA++IT DGWF++GDAGY+D DG++YIHDRVKDMIVSGGENVYPAEVENVLM HPG+AD A+IGVPHEKWGETAKA+VV+    EV+E+EIIAY +E LA+FKCPTSVDW D LPRNPSGKILKKDLR PYW GR R+V+
Sbjct:  364 GEVGEIWVRSPQVMKGYWNMPEATAEAITADGWFKTGDAGYVDEDGYVYIHDRVKDMIVSGGENVYPAEVENVLMGHPGVADCAIIGVPHEKWGETAKAIVVRQPDVEVTEDEIIAYCQERLAKFKCPTSVDWTDMLPRNPSGKILKKDLREPYWAGRDRRVS 526          
BLAST of mRNA_P-wetherbeei_contig19063.1.1 vs. uniprot
Match: A0A6L6CX61_9ACTN (Long-chain-fatty-acid--CoA ligase n=6 Tax=root TaxID=1 RepID=A0A6L6CX61_9ACTN)

HSP 1 Score: 285 bits (729), Expect = 8.460e-92
Identity = 131/163 (80.37%), Postives = 145/163 (88.96%), Query Frame = 1
Query:    1 GEVGEIWIRGPQVMKGYWNMPEETAKSITDDGWFRSGDAGYLDADGFLYIHDRVKDMIVSGGENVYPAEVENVLMAHPGIADVAVIGVPHEKWGETAKAVVVKAAGSEVSEEEIIAYSREHLARFKCPTSVDWIDALPRNPSGKILKKDLRAPYWEGRARQVN 489
            GEVGEIWIR  Q M GYW  P+ETAK+I  DGWFRSGDAGY+DADG++YIHDRVKDMIVSGGENVYPAEVENVLM+HPGIADVAVIG+PHEKWGETA AVVVKAAG +V+E++II +SRE LARFKCPT V WID LPRNPSGK+LKKDLR PYW GR R+VN
Sbjct:  361 GEVGEIWIRSAQNMLGYWKRPDETAKAIDADGWFRSGDAGYVDADGYVYIHDRVKDMIVSGGENVYPAEVENVLMSHPGIADVAVIGIPHEKWGETALAVVVKAAGVDVTEDKIIEFSRERLARFKCPTQVQWIDVLPRNPSGKVLKKDLREPYWAGRERRVN 523          
BLAST of mRNA_P-wetherbeei_contig19063.1.1 vs. uniprot
Match: UPI000346F14D (long-chain-fatty-acid--CoA ligase n=1 Tax=Ilumatobacter nonamiensis TaxID=467093 RepID=UPI000346F14D)

HSP 1 Score: 282 bits (722), Expect = 1.090e-90
Identity = 132/165 (80.00%), Postives = 145/165 (87.88%), Query Frame = 1
Query:    1 GEVGEIWIRGPQVMKGYWNMPEETAKSITDDGWFRSGDAGYLDADGFLYIHDRVKDMIVSGGENVYPAEVENVLMAHPGIADVAVIGVPHEKWGETAKAVVVKAAGSEVSEE---EIIAYSREHLARFKCPTSVDWIDALPRNPSGKILKKDLRAPYWEGRARQV 486
            GEVGEIWIR PQVMKGYWNMPEETA S+T+DGWF+SGDAGYLD DG+L+IHDRVKDMIVSGGENVYPAEVENVLM H  IADVAVIGVPHEKWGETAKAVVV A G+   E+   +IIAY+R  LA FKCPTSVDW++ALPRNP+GKILKKDLR PYWEG  R+V
Sbjct:  363 GEVGEIWIRSPQVMKGYWNMPEETANSVTEDGWFKSGDAGYLDEDGYLFIHDRVKDMIVSGGENVYPAEVENVLMKHDAIADVAVIGVPHEKWGETAKAVVVVAEGASADEDTAADIIAYARTQLAVFKCPTSVDWVEALPRNPTGKILKKDLREPYWEGMDRRV 527          
BLAST of mRNA_P-wetherbeei_contig19063.1.1 vs. uniprot
Match: A0A2G4G9K0_9ACTN (Long-chain fatty acid--CoA ligase n=1 Tax=Acidimicrobium sp. TaxID=1872112 RepID=A0A2G4G9K0_9ACTN)

HSP 1 Score: 282 bits (721), Expect = 1.350e-90
Identity = 128/163 (78.53%), Postives = 145/163 (88.96%), Query Frame = 1
Query:    1 GEVGEIWIRGPQVMKGYWNMPEETAKSITDDGWFRSGDAGYLDADGFLYIHDRVKDMIVSGGENVYPAEVENVLMAHPGIADVAVIGVPHEKWGETAKAVVVKAAGSEVSEEEIIAYSREHLARFKCPTSVDWIDALPRNPSGKILKKDLRAPYWEGRARQVN 489
            GEVGEIWIR  QVM GYW  PEETAK+IT D WF+SGDAGY+DADG++YIHDRVKDMIVSGGENVYPAEVENVLM+HPGIADVAVIG+PHEKWGETA A+VV+A  +E +E+EII++S E LA+FKCPT V WIDALPRNPSGK+LKKDLR PYW GR R+VN
Sbjct:  361 GEVGEIWIRSAQVMAGYWKNPEETAKAITKDKWFKSGDAGYVDADGYVYIHDRVKDMIVSGGENVYPAEVENVLMSHPGIADVAVIGIPHEKWGETALAIVVRAPDTEATEQEIISFSHERLAKFKCPTQVAWIDALPRNPSGKVLKKDLREPYWAGRERRVN 523          
BLAST of mRNA_P-wetherbeei_contig19063.1.1 vs. uniprot
Match: A0A4P5RYQ2_9ACTN (Acyl-CoA synthetase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A4P5RYQ2_9ACTN)

HSP 1 Score: 281 bits (719), Expect = 2.620e-90
Identity = 129/163 (79.14%), Postives = 142/163 (87.12%), Query Frame = 1
Query:    1 GEVGEIWIRGPQVMKGYWNMPEETAKSITDDGWFRSGDAGYLDADGFLYIHDRVKDMIVSGGENVYPAEVENVLMAHPGIADVAVIGVPHEKWGETAKAVVVKAAGSEVSEEEIIAYSREHLARFKCPTSVDWIDALPRNPSGKILKKDLRAPYWEGRARQVN 489
            GEVGEIW R  QVMKGYWN P  TA+SIT +GWF+SGDAGY+DA+G++YIHDRVKDMIVSGGENVYPAEVENVLMAHP +ADVAVIGVPHE+WGETAKA++VK AG   SE EIIAY  E LA+FKCPTSV WID LPRNP+GKILKKDLRAPYW G  RQVN
Sbjct:  360 GEVGEIWCRSAQVMKGYWNNPAATAESITPEGWFKSGDAGYMDAEGYVYIHDRVKDMIVSGGENVYPAEVENVLMAHPAVADVAVIGVPHERWGETAKAIIVKRAGVNASEAEIIAYCVERLAKFKCPTSVTWIDVLPRNPTGKILKKDLRAPYWAGMERQVN 522          
BLAST of mRNA_P-wetherbeei_contig19063.1.1 vs. uniprot
Match: A0A6I3AB23_9ACTN (Long-chain-fatty-acid--CoA ligase n=4 Tax=root TaxID=1 RepID=A0A6I3AB23_9ACTN)

HSP 1 Score: 280 bits (716), Expect = 8.450e-90
Identity = 127/162 (78.40%), Postives = 146/162 (90.12%), Query Frame = 1
Query:    4 EVGEIWIRGPQVMKGYWNMPEETAKSITDDGWFRSGDAGYLDADGFLYIHDRVKDMIVSGGENVYPAEVENVLMAHPGIADVAVIGVPHEKWGETAKAVVVKAAGSEVSEEEIIAYSREHLARFKCPTSVDWIDALPRNPSGKILKKDLRAPYWEGRARQVN 489
            EVGEIW++GPQVM+GYWNMPEETAKSI D GWFR+GDAGY DADG+LYIHDRVKDMIVSGGENVYPAEVEN LM+HP IADVAVI VP ++WGET KA+VV+A G+  +E+EII Y+RE LAR+KCPTSVD+++ALPRNPSGKILKKDLRAP+W GR R VN
Sbjct:  366 EVGEIWVKGPQVMQGYWNMPEETAKSIVDGGWFRTGDAGYFDADGYLYIHDRVKDMIVSGGENVYPAEVENALMSHPDIADVAVIAVPSDRWGETPKAMVVRAPGTNPTEQEIIDYARERLARYKCPTSVDFLEALPRNPSGKILKKDLRAPFWAGRDRMVN 527          
BLAST of mRNA_P-wetherbeei_contig19063.1.1 vs. uniprot
Match: A0A7K1EKA6_9ACTN (Long-chain-fatty-acid--CoA ligase n=3 Tax=root TaxID=1 RepID=A0A7K1EKA6_9ACTN)

HSP 1 Score: 278 bits (712), Expect = 2.950e-89
Identity = 127/163 (77.91%), Postives = 144/163 (88.34%), Query Frame = 1
Query:    1 GEVGEIWIRGPQVMKGYWNMPEETAKSITDDGWFRSGDAGYLDADGFLYIHDRVKDMIVSGGENVYPAEVENVLMAHPGIADVAVIGVPHEKWGETAKAVVVKAAGSEVSEEEIIAYSREHLARFKCPTSVDWIDALPRNPSGKILKKDLRAPYWEGRARQVN 489
            GEVGEIW++ PQVMKGYWN  + T +SIT DGWF++GDAGY DADG++YIHDRVKDMIVSGGENVYPAEVE+ LM+HPGIADVAVIGVP  KWGET KA+VVKAAG EV+E +II +++  LA+FKC TSVDWIDALPRNPSGKILKKDLRAPYWEGR R VN
Sbjct:  360 GEVGEIWVKSPQVMKGYWNNQKATDESITSDGWFKTGDAGYKDADGYIYIHDRVKDMIVSGGENVYPAEVESALMSHPGIADVAVIGVPDAKWGETVKAIVVKAAGVEVTENDIIEFAKASLAKFKCATSVDWIDALPRNPSGKILKKDLRAPYWEGRERMVN 522          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19063.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9KKP9_9ACTN2.150e-9885.89Long-chain-fatty-acid--CoA ligase n=2 Tax=Actinoba... [more]
A0A524B975_9ACTN2.790e-9584.05Long-chain fatty acid--CoA ligase n=1 Tax=Acidimic... [more]
A0A7W1CKW2_9ACTN3.460e-9381.60Long-chain-fatty-acid--CoA ligase n=1 Tax=Acidimic... [more]
A0A6N2DP17_9ACTN3.250e-9278.53Long-chain-fatty-acid--CoA ligase n=1 Tax=Ilumatob... [more]
A0A6L6CX61_9ACTN8.460e-9280.37Long-chain-fatty-acid--CoA ligase n=6 Tax=root Tax... [more]
UPI000346F14D1.090e-9080.00long-chain-fatty-acid--CoA ligase n=1 Tax=Ilumatob... [more]
A0A2G4G9K0_9ACTN1.350e-9078.53Long-chain fatty acid--CoA ligase n=1 Tax=Acidimic... [more]
A0A4P5RYQ2_9ACTN2.620e-9079.14Acyl-CoA synthetase n=1 Tax=Actinomycetia bacteriu... [more]
A0A6I3AB23_9ACTN8.450e-9078.40Long-chain-fatty-acid--CoA ligase n=4 Tax=root Tax... [more]
A0A7K1EKA6_9ACTN2.950e-8977.91Long-chain-fatty-acid--CoA ligase n=3 Tax=root Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19063contigP-wetherbeei_contig19063:4..495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1313172.YM304_15700
PFAMsAMP-binding,AMP-binding_C
Model size492
Max annot lvl201174|Actinobacteria
KEGG rclassRC00004,RC00014
KEGG koko:K01897
KEGG TC4.C.1.1
KEGG ReactionR01280
KEGG Pathwayko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920
KEGG ModuleM00086
Hectar predicted targeting categoryother localisation
Exons1
Evalue3e-87
EggNOG OGsCOG0318@1|root,COG0318@2|Bacteria,2GIUC@201174|Actinobacteria,4CMUG@84992|Acidimicrobiia
EC6.2.1.3
DescriptionProtein synonym acyl-CoA synthetase
Cds size492
COG categoryIQ
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186162.8368576-CDS-P-wetherbeei_contig19063:3..4951683186162.8368576-CDS-P-wetherbeei_contig19063:3..495Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19063 4..495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19063.1.1prot_P-wetherbeei_contig19063.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19063 4..495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19063.1.1

>prot_P-wetherbeei_contig19063.1.1 ID=prot_P-wetherbeei_contig19063.1.1|Name=mRNA_P-wetherbeei_contig19063.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
GEVGEIWIRGPQVMKGYWNMPEETAKSITDDGWFRSGDAGYLDADGFLYI
HDRVKDMIVSGGENVYPAEVENVLMAHPGIADVAVIGVPHEKWGETAKAV
VVKAAGSEVSEEEIIAYSREHLARFKCPTSVDWIDALPRNPSGKILKKDL
RAPYWEGRARQVN*
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mRNA from alignment at P-wetherbeei_contig19063:4..495+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19063.1.1 ID=mRNA_P-wetherbeei_contig19063.1.1|Name=mRNA_P-wetherbeei_contig19063.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig19063:4..495+ (Phaeothamnion wetherbeei SAG_119_79)
GGTGAGGTGGGCGAGATCTGGATCCGCGGCCCGCAGGTGATGAAGGGCTA CTGGAACATGCCCGAGGAGACGGCCAAGTCGATCACCGACGACGGTTGGT TCCGCAGCGGCGACGCCGGCTACCTCGACGCCGACGGCTTCCTGTACATC CACGATCGCGTCAAGGACATGATCGTCAGTGGGGGCGAGAACGTCTACCC GGCCGAGGTCGAGAACGTGTTGATGGCCCACCCGGGCATCGCCGACGTCG CCGTCATCGGCGTGCCGCACGAGAAGTGGGGCGAGACAGCGAAGGCGGTC GTCGTGAAGGCGGCCGGCAGCGAGGTGAGCGAGGAGGAGATCATCGCCTA CTCGCGCGAGCACCTGGCTCGCTTCAAGTGCCCGACGAGCGTCGACTGGA TCGACGCACTCCCGCGCAACCCCAGCGGCAAGATCCTGAAGAAGGATCTG CGTGCCCCGTACTGGGAGGGTCGCGCCCGCCAGGTGAACTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19063:4..495+

>mRNA_P-wetherbeei_contig19063.1.1 ID=mRNA_P-wetherbeei_contig19063.1.1|Name=mRNA_P-wetherbeei_contig19063.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig19063:4..495+ (Phaeothamnion wetherbeei SAG_119_79)
GGTGAGGTGGGCGAGATCTGGATCCGCGGCCCGCAGGTGATGAAGGGCTA
CTGGAACATGCCCGAGGAGACGGCCAAGTCGATCACCGACGACGGTTGGT
TCCGCAGCGGCGACGCCGGCTACCTCGACGCCGACGGCTTCCTGTACATC
CACGATCGCGTCAAGGACATGATCGTCAGTGGGGGCGAGAACGTCTACCC
GGCCGAGGTCGAGAACGTGTTGATGGCCCACCCGGGCATCGCCGACGTCG
CCGTCATCGGCGTGCCGCACGAGAAGTGGGGCGAGACAGCGAAGGCGGTC
GTCGTGAAGGCGGCCGGCAGCGAGGTGAGCGAGGAGGAGATCATCGCCTA
CTCGCGCGAGCACCTGGCTCGCTTCAAGTGCCCGACGAGCGTCGACTGGA
TCGACGCACTCCCGCGCAACCCCAGCGGCAAGATCCTGAAGAAGGATCTG
CGTGCCCCGTACTGGGAGGGTCGCGCCCGCCAGGTGAACTAG
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