mRNA_P-wetherbeei_contig19061.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19061.1.1
Unique NamemRNA_P-wetherbeei_contig19061.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19061.1.1 vs. uniprot
Match: A0A835Z1G9_9STRA (PPPDE putative peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1G9_9STRA)

HSP 1 Score: 120 bits (302), Expect = 4.830e-31
Identity = 75/166 (45.18%), Postives = 96/166 (57.83%), Query Frame = 1
Query:    4 VNDALDSLRSEFGPDRYNVLSNNCNSFADAFLRELTGRPAPAWVNRLAWLGSWFSCCLPPEMLGEAPVQANS---------FSAFGGSGATLGGSGGXXXXXXXAGTVGISAGRGGSAVVMDTAAGGDGTSSSVGGSGAGGADTLTDRR---NKVREARLAALARA 465
            ++DA+ SLR +FGPD Y++L  NCNSF++AF   L  +P PAWVNR AW+GSWFSC +PP+MLG+APV   S         ++AFGGSG +LGG                +AG G SA V            S G        +LTDRR   +KVR+ARLAAL R+
Sbjct:   84 IDDAIASLRGDFGPDAYHILCRNCNSFSNAFCEALLNKPIPAWVNRAAWMGSWFSCLVPPQMLGQAPVNDLSGVPARATPAYAAFGGSGVSLGG----------------TAGGGASAAVP-----------SAGXXXXXXXXSLTDRREKADKVRQARLAALERS 222          
BLAST of mRNA_P-wetherbeei_contig19061.1.1 vs. uniprot
Match: D7G204_ECTSI (PPPDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G204_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 6.710e-31
Identity = 74/155 (47.74%), Postives = 96/155 (61.94%), Query Frame = 1
Query:   13 ALDSLRSEFGPDRYNVLSNNCNSFADAFLRELTGRPAPAWVNRLAWLGSWFSCCLPPEMLGEAPVQANSFSAFGGSGATLGGSGGXXXXXXXAGTVGISAGRGGSAVVMDTAAGGDGTSS--SVGGSGAGGADTLTDRRNKVREARLAALARAEA 471
            A+DSLR EFGPDRYNVL+ NCNSF+ A   EL G+P P +VNRLAW+GSWFSC +PP MLG+APV     S++    + L   G         G    +A +G S + +  + G  GT+S  S GG+G G    L+DRR ++R   +AAL RAEA
Sbjct:   84 AIDSLREEFGPDRYNVLTRNCNSFSSALCEELVGKPIPGYVNRLAWMGSWFSCLMPPGMLGDAPVNQGGSSSYNAGYSMLAPPGRSSGPAAVRGGGSRNAFQG-SGMTLAGSGGSAGTTSGSSTGGTGTGREGELSDRRERMR---MAALRRAEA 234          
BLAST of mRNA_P-wetherbeei_contig19061.1.1 vs. uniprot
Match: A0A7S2XZ08_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ08_9STRA)

HSP 1 Score: 105 bits (263), Expect = 6.360e-26
Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    4 VNDALDSLRSEFGPDRYNVLSNNCNSFADAFLRELTGRPAPAWVNRLAWLGSWFSCCLPPEMLGEAPVQANSFS 225
            V  AL +L +EFGPD+Y++L+ NCNSFADAF +EL GR  P WVNRLA++GS FSC +PPE LGEAPV A   S
Sbjct:   89 VQRALSNLEAEFGPDKYHILNKNCNSFADAFCQELVGRGIPGWVNRLAYMGSMFSCLIPPEYLGEAPVGAEPMS 162          
BLAST of mRNA_P-wetherbeei_contig19061.1.1 vs. uniprot
Match: A0A067CJN0_SAPPC (PPPDE domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJN0_SAPPC)

HSP 1 Score: 87.0 bits (214), Expect = 3.350e-18
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   16 LDSLRSEFGPDRYNVLSNNCNSFADAFLRELTGRPAPAWVNRLAWLGSWFSCCLPPEMLGEAPVQANS-----------FSAFGGSGATL 252
            LD LRSEF   +YN+L+ NCN+F++     L G P PA+VNR+A+LGS+ SC LP E+ G+APV+A+S           +++FGGSG +L
Sbjct:   83 LDELRSEFQGHQYNLLTKNCNTFSNELCLRLLGVPIPAYVNRMAYLGSFLSCLLPRELTGQAPVEADSTPTTANTPRASYTSFGGSGISL 172          
BLAST of mRNA_P-wetherbeei_contig19061.1.1 vs. uniprot
Match: A0A7S2BXA3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BXA3_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.990e-18
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   13 ALDSLRSEFGPDRYNVLSNNCNSFADAFLRELTGRPAPAWVNRLAWLGSWFSCCLPPEMLGEAPV---------QANSFSAFG 234
            ALD L+  F P  YNV++ NCN F+DA  R+L   P P WVNRL+ +G+ FSC +PP++LG++PV         QA SF AFG
Sbjct:  102 ALDELKPFFDPSSYNVITKNCNHFSDALSRQLLDTPIPGWVNRLSNIGNCFSCLIPPQLLGQSPVNAPGGGGGSQAPSFQAFG 184          
BLAST of mRNA_P-wetherbeei_contig19061.1.1 vs. uniprot
Match: W7U9V7_9STRA (PPPDE domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U9V7_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 7.140e-18
Identity = 41/74 (55.41%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   13 ALDSLRSEFGPDRYNVLSNNCNSFADAFLRELTGRPAPAWVNRLAWLGSWFSCCLPPEMLGEAPV--QANSFSA 228
            AL++LRS+FGPD Y+++  NCN F+ A + EL G+P PA+VNRLA+ GS+FSC LP EM  +APV  + NS  A
Sbjct:   89 ALEALRSDFGPDDYSLVKLNCNHFSAALVMELLGKPIPAYVNRLAFFGSFFSCFLPVEMTSQAPVSQEGNSTGA 162          
BLAST of mRNA_P-wetherbeei_contig19061.1.1 vs. uniprot
Match: W4HBW5_9STRA (PPPDE domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HBW5_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.190e-17
Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = 1
Query:   16 LDSLRSEFGPDRYNVLSNNCNSFADAFLRELTGRPAPAWVNRLAWLGSWFSCCLPPEMLGEAPVQANSFSAF 231
            LD +RSEF   +YN+L+ NCN+F++     L G+P P ++NR+A+ GS FSC +P +++GEAPVQ   FS F
Sbjct:   88 LDDMRSEFHGSQYNLLTKNCNTFSNEACLRLVGQPIPPFINRIAYFGSCFSCLIPKQLMGEAPVQETKFSRF 159          
BLAST of mRNA_P-wetherbeei_contig19061.1.1 vs. uniprot
Match: A0A7J6LKU0_PEROL (Sphingosine kinase 2 n=6 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LKU0_PEROL)

HSP 1 Score: 87.8 bits (216), Expect = 4.080e-17
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 KVNDALDSLRSEFGPDRYNVLSNNCNSFADAFLRELTGRPAPAWVNRLAWLGSWFSCCLPPEMLGEAPVQANSFSA 228
            ++  ALD LR EF  D Y+V+  NCN F+DAF R + GR  PAWVNRLAW GSW +CC+P     EA   A + S+
Sbjct: 2288 QIESALDKLRDEFRGDSYHVVEKNCNHFSDAFCRAILGRALPAWVNRLAWWGSWCACCIPENDDDEASHNAGAGSS 2363          
BLAST of mRNA_P-wetherbeei_contig19061.1.1 vs. uniprot
Match: A0A024UT75_9STRA (PPPDE domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UT75_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.310e-17
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 1
Query:   16 LDSLRSEFGPDRYNVLSNNCNSFADAFLRELTGRPAPAWVNRLAWLGSWFSCCLPPEMLGEAPVQANSFSAFGG 237
            LD +RSEF    YN+L+ NCN+FA+     L G+P PA++NR+A+LGS FSC +P ++ GEAPVQ +  + FGG
Sbjct:   88 LDDMRSEFNGSHYNLLTKNCNTFANEACLRLVGQPIPAYINRIAYLGSCFSCLIPKQLTGEAPVQGSD-AMFGG 160          
BLAST of mRNA_P-wetherbeei_contig19061.1.1 vs. uniprot
Match: A0A7J6R1W6_PEROL (PPPDE domain-containing protein (Fragment) n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6R1W6_PEROL)

HSP 1 Score: 85.9 bits (211), Expect = 6.250e-17
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 KVNDALDSLRSEFGPDRYNVLSNNCNSFADAFLRELTGRPAPAWVNRLAWLGSWFSCCLPPEMLGEAPVQANSFSA 228
            ++  ALD LR EF  D Y+V+  NCN F+DAF R + GR  PAWVNRLAW GSW +CC+P     E+   A + S+
Sbjct:  140 QIESALDKLRDEFRGDSYHVVKKNCNHFSDAFCRAILGRALPAWVNRLAWWGSWCACCIPDYDDDESSHNAGAGSS 215          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19061.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1G9_9STRA4.830e-3145.18PPPDE putative peptidase domain-containing protein... [more]
D7G204_ECTSI6.710e-3147.74PPPDE domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S2XZ08_9STRA6.360e-2663.51Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A067CJN0_SAPPC3.350e-1847.78PPPDE domain-containing protein n=3 Tax=Saprolegni... [more]
A0A7S2BXA3_9STRA3.990e-1849.40Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7U9V7_9STRA7.140e-1855.41PPPDE domain-containing protein n=2 Tax=Monodopsid... [more]
W4HBW5_9STRA3.190e-1748.61PPPDE domain-containing protein n=4 Tax=Aphanomyce... [more]
A0A7J6LKU0_PEROL4.080e-1751.32Sphingosine kinase 2 n=6 Tax=Perkinsus olseni TaxI... [more]
A0A024UT75_9STRA5.310e-1751.35PPPDE domain-containing protein n=2 Tax=Aphanomyce... [more]
A0A7J6R1W6_PEROL6.250e-1750.00PPPDE domain-containing protein (Fragment) n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19061contigP-wetherbeei_contig19061:462..1263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G204
PFAMsPeptidase_C97
Model size486
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.1e-31
EggNOG OGsKOG0324@1|root,KOG0324@2759|Eukaryota
Ec32 ortholog descriptionPPPDE putative peptidase domain
Ec32 orthologEc-07_003470.1
DescriptionLys63-specific deubiquitinase activity
Cds size486
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186162.7993193-CDS-P-wetherbeei_contig19061:461..7331683186162.7993193-CDS-P-wetherbeei_contig19061:461..733Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19061 462..733 -
1683186162.8095598-CDS-P-wetherbeei_contig19061:1049..12631683186162.8095598-CDS-P-wetherbeei_contig19061:1049..1263Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19061 1050..1263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19061.1.1prot_P-wetherbeei_contig19061.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19061 462..1263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19061.1.1

>prot_P-wetherbeei_contig19061.1.1 ID=prot_P-wetherbeei_contig19061.1.1|Name=mRNA_P-wetherbeei_contig19061.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
KVNDALDSLRSEFGPDRYNVLSNNCNSFADAFLRELTGRPAPAWVNRLAW
LGSWFSCCLPPEMLGEAPVQANSFSAFGGSGATLGGSGGGGSGSGLAGTV
GISAGRGGSAVVMDTAAGGDGTSSSVGGSGAGGADTLTDRRNKVREARLA
ALARAEAAEKH*
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mRNA from alignment at P-wetherbeei_contig19061:462..1263-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19061.1.1 ID=mRNA_P-wetherbeei_contig19061.1.1|Name=mRNA_P-wetherbeei_contig19061.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=802bp|location=Sequence derived from alignment at P-wetherbeei_contig19061:462..1263- (Phaeothamnion wetherbeei SAG_119_79)
AAGGTGAACGATGCGCTTGACTCGCTCCGAAGCGAGTTCGGGCCGGACCG ATACAACGTTTTGTCCAACAACTGCAACTCGTTCGCCGACGCCTTCCTAC GGGAGCTGACGGGGCGGCCAGCGCCGGCGTGGGTGAACCGCCTTGCGTGG CTCGGCAGCTGGTTCTCATGCTGCCTGCCGCCCGAAATGCTCGGGGAGGC GCCCGTGCAGGCGAGTCGTCGGTTTCGTGCCGCATTGCATTGCGTCGCGT GAAATTGGGTCTTCGTAGATTGTACAAGGGCAACTCTGTGTGTGTTGGTG TTGGAATCCGCTGTAGGCACCAATGTTGCCGAGTCGAATTCGGAGCCGCC AGTAGGGATACCCTTCGCTAGCATGTCCTGGGCATCCATCCGGTTTCGGC TGGAAATCGTCCTCACGCTGTTGATGCCTCTTATCTCGTTCTCTGTTTCC TCTGCAGGGCGGCTCGGGGGCCGGAGGGGTGTACCAAATGGTCGCCCCGG CAAATCACCGGCTGCATTCGACGCAACCAGACTCCTTCTCTGCCTTCGGC GGTTCGGGTGCAACACTCGGCGGCTCCGGCGGCGGCGGAAGCGGCAGCGG CCTCGCCGGCACCGTGGGGATAAGCGCGGGTCGCGGCGGGAGCGCAGTGG TGATGGACACGGCGGCGGGCGGCGATGGCACGTCGTCGTCGGTGGGAGGC AGCGGCGCCGGCGGCGCCGACACGCTGACGGACCGGCGAAACAAGGTGCG GGAGGCGCGACTGGCGGCGCTGGCGCGAGCGGAGGCCGCCGAGAAACATT GA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19061:462..1263-

>mRNA_P-wetherbeei_contig19061.1.1 ID=mRNA_P-wetherbeei_contig19061.1.1|Name=mRNA_P-wetherbeei_contig19061.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig19061:462..1263- (Phaeothamnion wetherbeei SAG_119_79)
AAGGTGAACGATGCGCTTGACTCGCTCCGAAGCGAGTTCGGGCCGGACCG
ATACAACGTTTTGTCCAACAACTGCAACTCGTTCGCCGACGCCTTCCTAC
GGGAGCTGACGGGGCGGCCAGCGCCGGCGTGGGTGAACCGCCTTGCGTGG
CTCGGCAGCTGGTTCTCATGCTGCCTGCCGCCCGAAATGCTCGGGGAGGC
GCCCGTGCAGGCGAACTCCTTCTCTGCCTTCGGCGGTTCGGGTGCAACAC
TCGGCGGCTCCGGCGGCGGCGGAAGCGGCAGCGGCCTCGCCGGCACCGTG
GGGATAAGCGCGGGTCGCGGCGGGAGCGCAGTGGTGATGGACACGGCGGC
GGGCGGCGATGGCACGTCGTCGTCGGTGGGAGGCAGCGGCGCCGGCGGCG
CCGACACGCTGACGGACCGGCGAAACAAGGTGCGGGAGGCGCGACTGGCG
GCGCTGGCGCGAGCGGAGGCCGCCGAGAAACATTGA
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