mRNA_P-wetherbeei_contig19019.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19019.1.1
Unique NamemRNA_P-wetherbeei_contig19019.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19019.1.1 vs. uniprot
Match: A0A6N7FHG3_9ACTN (MFS transporter n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FHG3_9ACTN)

HSP 1 Score: 175 bits (444), Expect = 9.670e-50
Identity = 93/160 (58.13%), Postives = 116/160 (72.50%), Query Frame = 1
Query:   10 TWVPVFVPFVHGAAYAEDLGLSKVAAASVISAIGIGGVVGRLGSGVVSDRVGRLPALLGVFALQAVSFLLFASADGIAALWVAATLFGFSYGGGVTLLPPLCGDLFGRAHVAAIVGTIFAVAGAPAAIGPYVAGWLFDVTGSYSASFLSSAALNLTALVL 489
            TW+ VFVP VH  A+AEDLG SKVAAASV+SA+G+GG+VGRL  G  SD VGR PAL  +  +Q + F   A++ G+  L+++A +FGF+YGGGV + P L GD FGRA   AIVG IFA AG PAA GP++AG+LFD TGSY  S L+  A+NL AL L
Sbjct:  257 TWMAVFVPMVHLPAFAEDLGHSKVAAASVLSAVGVGGLVGRLSMGTASDHVGRRPALAAMMGIQVIGFAGLAASSGLIPLYLSAVVFGFAYGGGVVIFPALVGDFFGRASAGAIVGMIFAGAGGPAAAGPFLAGYLFDATGSYRISLLAGVAVNLAALAL 416          
BLAST of mRNA_P-wetherbeei_contig19019.1.1 vs. uniprot
Match: A0A2A4LWY1_9GAMM (MFS domain-containing protein n=1 Tax=Cellvibrionales bacterium TaxID=2026722 RepID=A0A2A4LWY1_9GAMM)

HSP 1 Score: 159 bits (402), Expect = 3.530e-46
Identity = 82/161 (50.93%), Postives = 115/161 (71.43%), Query Frame = 1
Query:    1 YFGTWVPVFVPFVHGAAYAEDLGLSKVAAASVISAIGIGGVVGRLGSGVVSDRVGRLPALLGVFALQAVSFLLFASADGIAALWVAATLFGFSYGGGVTLLPPLCGDLFGRAHVAAIVGTIFAVAGAPAAIGPYVAGWLFDVTGSYSASFLSSAALNLTAL 483
            +F +W+ VFVP VH A +A+D+G  K  A+++ISAIG+GG++GR  +G++SD +GR+ +L  V ALQ V F +FASADG+A L +AA  FGF YGG  T+ P +  D FG+AH+ AIVG +FAVAG+ AA GP +AG+L+D+T SY  +F     +NL  L
Sbjct:   13 FFFSWMAVFVPLVHIAPFAQDVGFGKATASTMISAIGVGGLLGRTATGIISDLIGRIASLAAVVALQVVCFTVFASADGLALLVLAAVCFGFGYGGTTTMFPAIFSDPFGQAHIGAIVGAVFAVAGSSAAFGPAMAGYLYDLTDSYRLAFALGGMMNLMGL 173          
BLAST of mRNA_P-wetherbeei_contig19019.1.1 vs. uniprot
Match: A0A6N7FSE7_9ACTN (MFS transporter n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FSE7_9ACTN)

HSP 1 Score: 161 bits (408), Expect = 2.180e-44
Identity = 87/164 (53.05%), Postives = 115/164 (70.12%), Query Frame = 1
Query:   10 TWVPVFVPFVHGAAYAEDLGLSKVAAASVISAIGIGGVVGRLGSGVVSDRVGRLPALLGVFALQAVSFLLFASADGIAALWVAATLFGFSYGGGVTLLPPLCGDLFGRAHVAAIVGTIFAVAGAPAAIGPYVAGWLFDVTGSYSASFLSSAALNLTALVLTAVL 501
            TW+ VF+P VH   +AEDLG+    AAS++SA+GIGG+VGR  +G  SDRVGR  +L  V  +Q V+FL+FA +D +  L+ AA  FGF YGG  T+ P L  DLFGRAH  A+ G +FA AG+ AA+GP+VA W++D+TGSY A+F+ SA +N   LVL  VL
Sbjct:  263 TWLVVFLPLVHLPPFAEDLGIGATVAASLVSAVGIGGLVGRTLTGGFSDRVGRTVSLAAVLGVQVVAFLVFAVSDSLWTLYPAAVGFGFGYGGTTTVFPALVADLFGRAHAGALTGLVFAGAGSAAAVGPFVAAWMYDLTGSYRAAFVLSAVVNGMGLVLVVVL 426          
BLAST of mRNA_P-wetherbeei_contig19019.1.1 vs. uniprot
Match: A0A1F7NGS7_9BACT (MFS domain-containing protein n=1 Tax=Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_68_19 TaxID=1802104 RepID=A0A1F7NGS7_9BACT)

HSP 1 Score: 150 bits (380), Expect = 9.100e-41
Identity = 84/162 (51.85%), Postives = 110/162 (67.90%), Query Frame = 1
Query:   10 TWVPVFVPFVHGAAYAEDLGLSKVAAASVISAIGIGGVVGRLGSGVVSDRVGRLPALLGVFALQAVSFLLFASADGIAALWVAATLFGFSYGGGVTLLPPLCGDLFGRAHVAAIVGTIFAVAGAPAAIGPYVAGWLFDVTGSYSASFLSSAALNLTALVLTA 495
            TW+PVF+P VH   +A D G+S + A++V+SA+GI  VVGRL  G VSD +GR PAL  V ALQ  +FL F    G+ +L++ A  FGFSYG   TL P + GD FGR    ++VG +FA+AG+ AA GP VAG ++D TG+Y+ +FL SAA N  ALVL A
Sbjct:  225 TWIPVFIPLVHIVPFARDFGMSSLVASTVLSALGIAAVVGRLAMGAVSDTIGRRPALALVIALQTAAFLGFTLVHGLPSLYLVALGFGFSYGAVSTLFPAIVGDFFGREQAGSLVGFLFALAGSMAAWGPLVAGAIYDATGAYTRAFLLSAASNGVALVLLA 386          
BLAST of mRNA_P-wetherbeei_contig19019.1.1 vs. uniprot
Match: A0A2E8GFJ2_9ACTN (MFS domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8GFJ2_9ACTN)

HSP 1 Score: 150 bits (379), Expect = 2.180e-40
Identity = 86/160 (53.75%), Postives = 109/160 (68.12%), Query Frame = 1
Query:   10 TWVPVFVPFVHGAAYAEDLGLSKVAAASVISAIGIGGVVGRLGSGVVSDRVGRLPALLGVFALQAVSFLLFASADGIAALWVAATLFGFSYGGGVTLLPPLCGDLFGRAHVAAIVGTIFAVAGAPAAIGPYVAGWLFDVTGSYSASFLSSAALNLTALVL 489
            T++ VFVPFVHG  +A+ LG S   A++VISAIGIGG++GRL  G VSDR+GR  A++   +L+  SF+  A ++G+  L+ +A  FGFSYGGGV + PPL  DLFGRAH  AIVG IFA AG  AAIGPY A  L D  G Y  +FL S   N  AL++
Sbjct:  254 TFLAVFVPFVHGVQFAQSLGASLQTASTVISAIGIGGLIGRLVMGSVSDRIGRKSAVILALSLETASFIGMAFSNGLWLLYPSAVAFGFSYGGGVVVFPPLVADLFGRAHAGAIVGRIFATAGTMAAIGPYAAQLLHDALGDYRWAFLLSGLANGCALLI 413          
BLAST of mRNA_P-wetherbeei_contig19019.1.1 vs. uniprot
Match: A0A1Q7DA15_9BACT (MFS domain-containing protein n=1 Tax=Candidatus Rokubacteria bacterium 13_1_40CM_68_15 TaxID=1805366 RepID=A0A1Q7DA15_9BACT)

HSP 1 Score: 150 bits (378), Expect = 3.410e-40
Identity = 87/174 (50.00%), Postives = 114/174 (65.52%), Query Frame = 1
Query:   10 TWVPVFVPFVHGAAYAEDLGLSKVAAASVISAIGIGGVVGRLGSGVVSDRVGRLPALLGVFALQAVSFLLFASADGIAALWVAATLFGFSYGGGVTLLPPLCGDLFGRAHVAAIVGTIFAVAGAPAAIGPYVAGWLFDVTGSYSASFLSSAALNLTALVLTAVLAWRSRRMAGA 531
            TW+PVF+P VH   ++ DLG S + AASVISA G+G VVGRL  G +SDR+GR   +    ALQA++F  FA   G+ AL+  A LFG+SYG   TL   + GD FGRA    +VG +FA+AG+ AA GP +AG L+D TG+Y  +F  +A LN+ A+ L  +L  R  RMAGA
Sbjct:  246 TWIPVFIPLVHRVRWSRDLGFSPLVAASVISATGVGAVVGRLVMGALSDRIGRRTVVATAMALQAIAFAAFAVVVGLTALYAIAFLFGYSYGAISTLFTAIIGDFFGRAQAGTLVGVLFAIAGSMAAWGPLLAGALYDATGTYRPAFALAALLNVLAIGL--LLLCRPPRMAGA 417          
BLAST of mRNA_P-wetherbeei_contig19019.1.1 vs. uniprot
Match: A0A350RGI7_9ACTN (MFS domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A350RGI7_9ACTN)

HSP 1 Score: 148 bits (373), Expect = 1.650e-39
Identity = 85/160 (53.12%), Postives = 106/160 (66.25%), Query Frame = 1
Query:   10 TWVPVFVPFVHGAAYAEDLGLSKVAAASVISAIGIGGVVGRLGSGVVSDRVGRLPALLGVFALQAVSFLLFASADGIAALWVAATLFGFSYGGGVTLLPPLCGDLFGRAHVAAIVGTIFAVAGAPAAIGPYVAGWLFDVTGSYSASFLSSAALNLTALVL 489
            T++ VFVPFVHG  +A+ LG S   A++VISAIGIGG+VGRL  G VSDR+GR  A++    ++  SF+  A ++ +  L+ +A  FGF+YGGGV + PPL  DLFGRAH  +IVG IFA AG  AAIGPY A  L D  GSY   FL S   N  A VL
Sbjct:  254 TFIAVFVPFVHGVQFAQSLGASLQTASTVISAIGIGGLVGRLVMGPVSDRIGRKNAVMLALLIETASFVGMAGSNSLWLLYPSAAAFGFAYGGGVVVFPPLVADLFGRAHAGSIVGRIFATAGTMAAIGPYAAQMLHDALGSYRWPFLLSGMANALAFVL 413          
BLAST of mRNA_P-wetherbeei_contig19019.1.1 vs. uniprot
Match: A0A2E7T758_9ACTN (MFS domain-containing protein n=6 Tax=Actinobacteria TaxID=201174 RepID=A0A2E7T758_9ACTN)

HSP 1 Score: 147 bits (372), Expect = 2.320e-39
Identity = 86/160 (53.75%), Postives = 108/160 (67.50%), Query Frame = 1
Query:   10 TWVPVFVPFVHGAAYAEDLGLSKVAAASVISAIGIGGVVGRLGSGVVSDRVGRLPALLGVFALQAVSFLLFASADGIAALWVAATLFGFSYGGGVTLLPPLCGDLFGRAHVAAIVGTIFAVAGAPAAIGPYVAGWLFDVTGSYSASFLSSAALNLTALVL 489
            T+V VFVPFVHG  +A+ LG S   A++VISAIGIGG++GRL  G VSDR+GR  A++    L+  SFL  A A+ +  L+++A  FGF+YGGGV + PPL  D FGRAH  +IVG IFA AG  AAIGPY A  L D  G+Y  +FL S   N  AL+L
Sbjct:  254 TFVAVFVPFVHGVQFAQSLGASLQTASTVISAIGIGGLIGRLVMGPVSDRIGRKNAVMLALFLETASFLGMAGANSLWLLYLSAATFGFAYGGGVVVFPPLVADFFGRAHAGSIVGRIFATAGTMAAIGPYTAQVLRDALGNYRWAFLLSGIANGLALLL 413          
BLAST of mRNA_P-wetherbeei_contig19019.1.1 vs. uniprot
Match: A0A2E5I0Q3_9ACTN (MFS domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A2E5I0Q3_9ACTN)

HSP 1 Score: 147 bits (371), Expect = 3.250e-39
Identity = 83/160 (51.88%), Postives = 107/160 (66.88%), Query Frame = 1
Query:   10 TWVPVFVPFVHGAAYAEDLGLSKVAAASVISAIGIGGVVGRLGSGVVSDRVGRLPALLGVFALQAVSFLLFASADGIAALWVAATLFGFSYGGGVTLLPPLCGDLFGRAHVAAIVGTIFAVAGAPAAIGPYVAGWLFDVTGSYSASFLSSAALNLTALVL 489
            T++ VF+PF+HG  +A+ LG S   A++VISAIGIGG+VGRL  G VSDR+GR  A+     ++  SF+  A ++G+  L+ +   FGF+YGGGV + PPL  DLFGRAH  AIVG IFA AG  AAIGPY+A  L D  G Y  +FL S   N  AL+L
Sbjct:  254 TFLAVFIPFIHGVQFAQSLGASLQTASTVISAIGIGGLVGRLTMGPVSDRIGRKTAVTLALGIETASFVGMACSNGLWLLYPSVAAFGFAYGGGVVVFPPLVADLFGRAHAGAIVGRIFATAGTMAAIGPYIAQLLHDALGDYRWAFLLSGLANGCALLL 413          
BLAST of mRNA_P-wetherbeei_contig19019.1.1 vs. uniprot
Match: A0A2E6DM85_9ACTN (MFS domain-containing protein n=2 Tax=Acidimicrobiia TaxID=84992 RepID=A0A2E6DM85_9ACTN)

HSP 1 Score: 145 bits (366), Expect = 1.440e-38
Identity = 81/160 (50.62%), Postives = 109/160 (68.12%), Query Frame = 1
Query:   10 TWVPVFVPFVHGAAYAEDLGLSKVAAASVISAIGIGGVVGRLGSGVVSDRVGRLPALLGVFALQAVSFLLFASADGIAALWVAATLFGFSYGGGVTLLPPLCGDLFGRAHVAAIVGTIFAVAGAPAAIGPYVAGWLFDVTGSYSASFLSSAALNLTALVL 489
            T++ VF+PFVHG  +A+ LG S   A++VISAIGIGG++GRL  G VSDR+GR  A+    +++ ++F+  A ++G+  L+ +A  FGF+YGGGV + PPL  DLFGRAH  AIVG IFA AG  +AIGPY A  L D  G+Y   FL +   N  AL+L
Sbjct:  241 TFLAVFIPFVHGVQFAQSLGASLQTASTVISAIGIGGLIGRLFMGPVSDRIGRKSAVTLALSIETLAFIGMAFSNGLWLLYPSAVAFGFAYGGGVVVFPPLVADLFGRAHAGAIVGRIFATAGTMSAIGPYAAQLLHDALGAYRWPFLFAGLANACALLL 400          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19019.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N7FHG3_9ACTN9.670e-5058.13MFS transporter n=1 Tax=Acidimicrobiia bacterium T... [more]
A0A2A4LWY1_9GAMM3.530e-4650.93MFS domain-containing protein n=1 Tax=Cellvibriona... [more]
A0A6N7FSE7_9ACTN2.180e-4453.05MFS transporter n=1 Tax=Acidimicrobiia bacterium T... [more]
A0A1F7NGS7_9BACT9.100e-4151.85MFS domain-containing protein n=1 Tax=Candidatus R... [more]
A0A2E8GFJ2_9ACTN2.180e-4053.75MFS domain-containing protein n=2 Tax=Acidimicrobi... [more]
A0A1Q7DA15_9BACT3.410e-4050.00MFS domain-containing protein n=1 Tax=Candidatus R... [more]
A0A350RGI7_9ACTN1.650e-3953.13MFS domain-containing protein n=2 Tax=Acidimicrobi... [more]
A0A2E7T758_9ACTN2.320e-3953.75MFS domain-containing protein n=6 Tax=Actinobacter... [more]
A0A2E5I0Q3_9ACTN3.250e-3951.88MFS domain-containing protein n=2 Tax=root TaxID=1... [more]
A0A2E6DM85_9ACTN1.440e-3850.63MFS domain-containing protein n=2 Tax=Acidimicrobi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19019contigP-wetherbeei_contig19019:1..540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog395019.Bmul_2878
PFAMsMFS_1
Model size540
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.65e-24
EggNOG OGsCOG0477@1|root,COG2814@2|Bacteria,1MVHG@1224|Proteobacteria,2VPR2@28216|Betaproteobacteria,1KH5M@119060|Burkholderiaceae
DescriptionUncharacterised MFS-type transporter YbfB
Cds size540
COG categoryEGP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186161.8777425-CDS-P-wetherbeei_contig19019:0..5401683186161.8777425-CDS-P-wetherbeei_contig19019:0..540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19019 1..540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19019.1.1prot_P-wetherbeei_contig19019.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19019 1..540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19019.1.1

>prot_P-wetherbeei_contig19019.1.1 ID=prot_P-wetherbeei_contig19019.1.1|Name=mRNA_P-wetherbeei_contig19019.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp
YFGTWVPVFVPFVHGAAYAEDLGLSKVAAASVISAIGIGGVVGRLGSGVV
SDRVGRLPALLGVFALQAVSFLLFASADGIAALWVAATLFGFSYGGGVTL
LPPLCGDLFGRAHVAAIVGTIFAVAGAPAAIGPYVAGWLFDVTGSYSASF
LSSAALNLTALVLTAVLAWRSRRMAGAMS*
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mRNA from alignment at P-wetherbeei_contig19019:1..540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19019.1.1 ID=mRNA_P-wetherbeei_contig19019.1.1|Name=mRNA_P-wetherbeei_contig19019.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig19019:1..540+ (Phaeothamnion wetherbeei SAG_119_79)
TATTTCGGGACCTGGGTGCCGGTGTTCGTGCCCTTTGTGCATGGCGCGGC GTACGCCGAGGATCTGGGTTTGAGCAAGGTCGCGGCCGCCTCGGTGATCA GTGCTATTGGCATCGGCGGTGTGGTCGGACGCTTAGGTTCGGGTGTGGTG TCCGACCGGGTCGGCCGGCTGCCGGCCCTGCTCGGTGTATTTGCGTTGCA GGCCGTGTCCTTTCTGCTCTTCGCCAGCGCCGATGGCATCGCGGCGCTGT GGGTGGCGGCGACCTTGTTCGGCTTTTCCTATGGTGGTGGCGTGACCTTG TTGCCGCCGCTGTGTGGCGATCTGTTCGGCCGTGCCCATGTCGCCGCCAT TGTCGGCACCATATTTGCGGTCGCCGGCGCACCGGCCGCCATCGGTCCCT ATGTGGCAGGCTGGCTGTTTGATGTGACCGGCAGTTACAGCGCGTCGTTC TTGAGTTCCGCTGCGCTGAACTTGACGGCGTTAGTCCTGACCGCAGTATT GGCGTGGCGCAGCAGGCGCATGGCTGGTGCGATGAGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19019:1..540+

>mRNA_P-wetherbeei_contig19019.1.1 ID=mRNA_P-wetherbeei_contig19019.1.1|Name=mRNA_P-wetherbeei_contig19019.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig19019:1..540+ (Phaeothamnion wetherbeei SAG_119_79)
TATTTCGGGACCTGGGTGCCGGTGTTCGTGCCCTTTGTGCATGGCGCGGC
GTACGCCGAGGATCTGGGTTTGAGCAAGGTCGCGGCCGCCTCGGTGATCA
GTGCTATTGGCATCGGCGGTGTGGTCGGACGCTTAGGTTCGGGTGTGGTG
TCCGACCGGGTCGGCCGGCTGCCGGCCCTGCTCGGTGTATTTGCGTTGCA
GGCCGTGTCCTTTCTGCTCTTCGCCAGCGCCGATGGCATCGCGGCGCTGT
GGGTGGCGGCGACCTTGTTCGGCTTTTCCTATGGTGGTGGCGTGACCTTG
TTGCCGCCGCTGTGTGGCGATCTGTTCGGCCGTGCCCATGTCGCCGCCAT
TGTCGGCACCATATTTGCGGTCGCCGGCGCACCGGCCGCCATCGGTCCCT
ATGTGGCAGGCTGGCTGTTTGATGTGACCGGCAGTTACAGCGCGTCGTTC
TTGAGTTCCGCTGCGCTGAACTTGACGGCGTTAGTCCTGACCGCAGTATT
GGCGTGGCGCAGCAGGCGCATGGCTGGTGCGATGAGTTGA
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