mRNA_P-wetherbeei_contig18971.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18971.1.1
Unique NamemRNA_P-wetherbeei_contig18971.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18971.1.1 vs. uniprot
Match: A0A7X8XLP7_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XLP7_9BURK)

HSP 1 Score: 80.9 bits (198), Expect = 2.830e-15
Identity = 43/93 (46.24%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:  100 WLVGLLAGAVWIATCANQQN-LVDDDYWMHTATQAQILAGKLPPCNPFFPDLELQGHYGRDLLIAGLARATGVMTFRAQWIFTSLCCSLGVWL 375
            W V  LA    +     QQN  VDDD+++H   Q Q+ AG+ PP NPF P LE+ GHYG DLLIA L RA+G+     + + TSL   +G WL
Sbjct:   98 WAVLALATLAILGYAQIQQNHTVDDDFFIHAPQQVQMGAGRFPPPNPFIPQLEMHGHYGSDLLIALLHRASGLNVVTTKQVLTSLLQVVGFWL 190
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BLAST of mRNA_P-wetherbeei_contig18971.1.1 vs. uniprot
Match: A0A7Z9PW45_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PW45_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 4.050e-13
Identity = 41/99 (41.41%), Postives = 54/99 (54.55%), Query Frame = 1 
Query:   82 LSRSQCW-LVGLLAGAVWIATCANQQNLVDDDYWMHTATQAQILAGKLPPCNPFFPDLELQGHYGRDLLIAGLARATGVMTFRAQWIFTSLCCSLGVWL 375
            L ++  W LVGL    V  AT A Q    DDDYW+H   Q  +  G  PP NPFF D+ + GHYGR+L I   +  +G   F +Q + TS+   L +WL
Sbjct:   85 LPQAAAWTLVGLTLYIVTYAT-AQQIASADDDYWIHAPLQGLMRHGNFPPTNPFFSDIPMNGHYGRNLSIVTFSYLSGFDVFLSQHVLTSVLQGLTLWL 182
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BLAST of mRNA_P-wetherbeei_contig18971.1.1 vs. uniprot
Match: A0A7X8XPW8_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XPW8_9BURK)

HSP 1 Score: 68.6 bits (166), Expect = 5.830e-11
Identity = 31/77 (40.26%), Postives = 45/77 (58.44%), Query Frame = 1 
Query:  124 AVWIATCANQQNLVDDDYWMHTATQAQILAGKLPPCNPFFPDLELQGHYGRDLLIAGLARATGVMTFRAQWIFTSLC 354
            A+++ T + Q    DDDYW+H   Q  +L G  PP NPFF D+ + GHYGR+L +  +A  +G+     Q + T LC
Sbjct:  111 AIYLYTNSQQIANTDDDYWIHMPLQGLMLHGGFPPTNPFFSDIPMNGHYGRNLTLVTVAWVSGLDLPFVQVLMTDLC 187
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BLAST of mRNA_P-wetherbeei_contig18971.1.1 vs. uniprot
Match: A0A7Z9UB56_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9UB56_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 5.190e-6
Identity = 24/64 (37.50%), Postives = 35/64 (54.69%), Query Frame = 1 
Query:  166 DDDYWMHTATQAQILAGKLPPCNPFFPDLELQGHYGRDLLIA--GLARATGVMTFRAQWIFTSL 351
            +DDYW+H    + +  G+ PP NPFF +L L GH+GRD ++A  G     G     + W F  +
Sbjct:  122 EDDYWIHFPLISLLNRGEFPPPNPFFDNLSLHGHFGRDYIVAILGWFSGGGETLLSSLWSFNHI 185
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18971.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7X8XLP7_9BURK2.830e-1546.24Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
A0A7Z9PW45_9BACT4.050e-1341.41Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A7X8XPW8_9BURK5.830e-1140.26Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
A0A7Z9UB56_9BACT5.190e-637.50Uncharacterized protein (Fragment) n=1 Tax=Phycisp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18971contigP-wetherbeei_contig18971:231..605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size375
Hectar predicted targeting categorysignal peptide
Exons1
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186160.395109-CDS-P-wetherbeei_contig18971:230..6051683186160.395109-CDS-P-wetherbeei_contig18971:230..605Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18971 231..605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18971.1.1prot_P-wetherbeei_contig18971.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18971 231..605 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18971.1.1

>prot_P-wetherbeei_contig18971.1.1 ID=prot_P-wetherbeei_contig18971.1.1|Name=mRNA_P-wetherbeei_contig18971.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
LGTVALTATLGVASLRWPAQEFRAHSPLSRSQCWLVGLLAGAVWIATCAN
QQNLVDDDYWMHTATQAQILAGKLPPCNPFFPDLELQGHYGRDLLIAGLA
RATGVMTFRAQWIFTSLCCSLGVWL
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mRNA from alignment at P-wetherbeei_contig18971:231..605-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18971.1.1 ID=mRNA_P-wetherbeei_contig18971.1.1|Name=mRNA_P-wetherbeei_contig18971.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig18971:231..605- (Phaeothamnion wetherbeei SAG_119_79)
CTCGGGACTGTAGCCTTGACAGCAACGCTTGGCGTCGCCTCCCTCCGCTG
GCCCGCGCAAGAATTTCGGGCCCATTCACCCCTCAGCCGAAGCCAATGCT
GGCTTGTGGGGCTGCTTGCCGGAGCCGTTTGGATCGCAACCTGCGCCAAT
CAGCAAAATCTCGTCGACGACGATTATTGGATGCATACCGCGACGCAAGC
GCAAATTCTGGCCGGAAAGTTGCCCCCTTGCAACCCCTTCTTTCCCGACC
TGGAACTTCAAGGTCACTATGGACGAGATCTACTCATCGCGGGGCTGGCG
CGGGCGACCGGCGTGATGACTTTCCGCGCCCAATGGATTTTTACCAGCCT
CTGCTGTTCTTTAGGAGTTTGGCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18971:231..605-

>mRNA_P-wetherbeei_contig18971.1.1 ID=mRNA_P-wetherbeei_contig18971.1.1|Name=mRNA_P-wetherbeei_contig18971.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig18971:231..605- (Phaeothamnion wetherbeei SAG_119_79)
CTCGGGACTGTAGCCTTGACAGCAACGCTTGGCGTCGCCTCCCTCCGCTG
GCCCGCGCAAGAATTTCGGGCCCATTCACCCCTCAGCCGAAGCCAATGCT
GGCTTGTGGGGCTGCTTGCCGGAGCCGTTTGGATCGCAACCTGCGCCAAT
CAGCAAAATCTCGTCGACGACGATTATTGGATGCATACCGCGACGCAAGC
GCAAATTCTGGCCGGAAAGTTGCCCCCTTGCAACCCCTTCTTTCCCGACC
TGGAACTTCAAGGTCACTATGGACGAGATCTACTCATCGCGGGGCTGGCG
CGGGCGACCGGCGTGATGACTTTCCGCGCCCAATGGATTTTTACCAGCCT
CTGCTGTTCTTTAGGAGTTTGGCTC
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