mRNA_P-wetherbeei_contig1891.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1891.4.1
Unique NamemRNA_P-wetherbeei_contig1891.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1891.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1891contigP-wetherbeei_contig1891:5370..6240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size873
Hectar predicted targeting categoryother localisation
Exons1
Cds size765
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186158.7371497-UTR-P-wetherbeei_contig1891:5369..54751683186158.7371497-UTR-P-wetherbeei_contig1891:5369..5475Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1891 5370..5475 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186158.7490528-CDS-P-wetherbeei_contig1891:5475..62401683186158.7490528-CDS-P-wetherbeei_contig1891:5475..6240Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1891 5476..6240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1891.4.1prot_P-wetherbeei_contig1891.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1891 5476..6240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1891.4.1

>prot_P-wetherbeei_contig1891.4.1 ID=prot_P-wetherbeei_contig1891.4.1|Name=mRNA_P-wetherbeei_contig1891.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=255bp
GPKKQAVQLADRRPGAAAVGASAGRPGPAAAVGAPPRPDAAAHAVPGAAT
DAVRAPDAAGGRLLGPVQGAAAGHAGGSGVARRPARRRAVSAVPAAPAAR
ATITAAAAAAILAGPRPAAATVPAAAVPPAAAAARAAGAARLPAAGGAVY
GRGAAASFPAPARPVHRHGLKKSENAGRHRGKWIWKEAFARAWAPLRQAR
LDLSERLSVLDDRRPVGWWRRHQLRPTAARRQSGAEFTNICGCRAAPASH
LVGQ*
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mRNA from alignment at P-wetherbeei_contig1891:5370..6240-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1891.4.1 ID=mRNA_P-wetherbeei_contig1891.4.1|Name=mRNA_P-wetherbeei_contig1891.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=871bp|location=Sequence derived from alignment at P-wetherbeei_contig1891:5370..6240- (Phaeothamnion wetherbeei SAG_119_79)
GGACCCAAAAAACAAGCCGTACAATTGGCCGACCGGCGTCCAGGTGCCGC
CGCCGTCGGGGCTTCTGCCGGTCGCCCCGGGCCAGCCGCCGCAGTGGGGG
CTCCACCCCGGCCCGATGCAGCAGCCCATGCAGTACCCGGGGCCGCCACC
GATGCAGTACGCGCCCCAGATGCCGCCGGGGGACGGCTACTGGGCCCCGT
ACAGGGGGCTGCCGCCGGGCATGCTGGCGGCAGCGGGGTGGCCCGGCGGC
CCGCCCGGAGGCGCGCCGTATCAGCAGTACCCGCAGCACCAGCAGCCAGG
GCCACCATCACCGCAGCAGCAGCAGCGGCGATACTGGCAGGGCCACGCCC
CGCCGCCGCCACAGTTCCAGCAGCAGCAGTACCACCAGCCGCCGCTGCAG
CACGCGCCGCAGGGGCGGCCCGCCTTCCCGCCGCAGGCGGAGCAGTATAC
GGGCGTGGCGCAGCGGCCAGCTTTCCCGCCCCAGCTCGGCCAGTTCACCG
GCACGGGCTGAAAAAGAGTGAGAATGCTGGGCGGCACAGAGGGAAGTGGA
TTTGGAAAGAAGCGTTTGCGCGTGCGTGGGCGCCGTTGCGGCAGGCGCGC
CTGGACTTGTCTGAGAGGCTTTCTGTATTGGACGATCGGCGGCCGGTCGG
CTGGTGGCGGCGGCATCAGTTGCGACCGACTGCTGCTAGGCGACAAAGTG
GCGCGGAATTTACGAACATTTGCGGCTGCCGGGCGGCGCCCGCCAGCCAT
CTCGTGGGACAATGAGGGCGAAGCGGGCGGCGAAGTTTGAGGGTCGAAGC
TAGCGTGTCGCCGCAGCATAGAGCAAGGGACCCATGTGACCGTATAAAAA
GAGCCTGGGGAATACAACGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1891:5370..6240-

>mRNA_P-wetherbeei_contig1891.4.1 ID=mRNA_P-wetherbeei_contig1891.4.1|Name=mRNA_P-wetherbeei_contig1891.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=765bp|location=Sequence derived from alignment at P-wetherbeei_contig1891:5370..6240- (Phaeothamnion wetherbeei SAG_119_79)
GGACCCAAAAAACAAGCCGTACAATTGGCCGACCGGCGTCCAGGTGCCGC
CGCCGTCGGGGCTTCTGCCGGTCGCCCCGGGCCAGCCGCCGCAGTGGGGG
CTCCACCCCGGCCCGATGCAGCAGCCCATGCAGTACCCGGGGCCGCCACC
GATGCAGTACGCGCCCCAGATGCCGCCGGGGGACGGCTACTGGGCCCCGT
ACAGGGGGCTGCCGCCGGGCATGCTGGCGGCAGCGGGGTGGCCCGGCGGC
CCGCCCGGAGGCGCGCCGTATCAGCAGTACCCGCAGCACCAGCAGCCAGG
GCCACCATCACCGCAGCAGCAGCAGCGGCGATACTGGCAGGGCCACGCCC
CGCCGCCGCCACAGTTCCAGCAGCAGCAGTACCACCAGCCGCCGCTGCAG
CACGCGCCGCAGGGGCGGCCCGCCTTCCCGCCGCAGGCGGAGCAGTATAC
GGGCGTGGCGCAGCGGCCAGCTTTCCCGCCCCAGCTCGGCCAGTTCACCG
GCACGGGCTGAAAAAGAGTGAGAATGCTGGGCGGCACAGAGGGAAGTGGA
TTTGGAAAGAAGCGTTTGCGCGTGCGTGGGCGCCGTTGCGGCAGGCGCGC
CTGGACTTGTCTGAGAGGCTTTCTGTATTGGACGATCGGCGGCCGGTCGG
CTGGTGGCGGCGGCATCAGTTGCGACCGACTGCTGCTAGGCGACAAAGTG
GCGCGGAATTTACGAACATTTGCGGCTGCCGGGCGGCGCCCGCCAGCCAT
CTCGTGGGACAATGA
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