mRNA_P-wetherbeei_contig18909.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18909.1.1
Unique NamemRNA_P-wetherbeei_contig18909.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18909.1.1 vs. uniprot
Match: A0A835ZAV4_9STRA (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 5.500e-32
Identity = 55/87 (63.22%), Postives = 64/87 (73.56%), Query Frame = 1
Query:   43 CPTCGKGYGVLRGTQPPGTMTVGTSDRHSCPGFEGHGTITISYSFSNGIQGVEHPSPGQAYAGTHRVAYLPDSPEGREVLRLLQTCF 303
            CPTCG  YG + G QP GTM V TS    C G+ G GTI I+Y+FS+GIQG +HP PGQ Y+GT RVAYLPD+P+GR VL LLQ CF
Sbjct:    1 CPTCGIMYGSVIGDQPEGTMNVTTSPHMHCSGYAGAGTIVINYAFSSGIQGPKHPHPGQRYSGTSRVAYLPDTPDGRAVLALLQRCF 87          
BLAST of mRNA_P-wetherbeei_contig18909.1.1 vs. uniprot
Match: D8LIP8_ECTSI (RING-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIP8_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 8.570e-32
Identity = 61/101 (60.40%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    7 CIIQTFKRMGPKCPTCGKGYGVLRGTQPPGTMTVGTSDRHSCP--GFEGHGTITISYSFSNGIQGVEHPSPGQAYAGTHRVAYLPDSPEGREVLRLLQTCF 303
            CI+Q FK MGPKCPTC K YG L G QP GTMTV T  R + P  G+E  GTI I YSF +G Q  +HP+PG AY GT R AYLPD+  GREVL LL+  F
Sbjct:  258 CIMQVFKAMGPKCPTCSKMYGPLHGDQPDGTMTVRTHRRGAIPLSGYESDGTILIQYSFPSGTQSSKHPNPGSAYHGTSRTAYLPDNAAGREVLALLRKSF 358          
BLAST of mRNA_P-wetherbeei_contig18909.1.1 vs. uniprot
Match: UPI001B887A1A (E3 ubiquitin-protein ligase DTX4-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B887A1A)

HSP 1 Score: 121 bits (303), Expect = 4.740e-30
Identity = 59/102 (57.84%), Postives = 72/102 (70.59%), Query Frame = 1
Query:    1 RRCIIQTFKRMGPKCPTCGKGYGVLRGTQPPGTMTVGT-SDRHSCPGFEGHGTITISYSFSNGIQGVEHPSPGQAYAGTHRVAYLPDSPEGREVLRLLQTCF 303
            R CI + F+   P CP+C   YG++ G QPPG+MT  T SDR   PG+E + TI I+YSFSNGIQ  +HP PG+ Y GTHR AYLPDSP+GR+V RLLQ  F
Sbjct:  403 RACIDKCFQTFKPICPSCNTVYGIIMGDQPPGSMTCTTASDR--LPGYEQYSTIVINYSFSNGIQTKDHPHPGKLYYGTHRTAYLPDSPDGRKVRRLLQKAF 502          
BLAST of mRNA_P-wetherbeei_contig18909.1.1 vs. uniprot
Match: A0A7S2XY22_9STRA (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY22_9STRA)

HSP 1 Score: 110 bits (274), Expect = 5.050e-29
Identity = 54/101 (53.47%), Postives = 63/101 (62.38%), Query Frame = 1
Query:    7 CIIQTFKRMGPKCPTCGKGYGVLRGTQPPGTMTVGTSDRHSCP--GFEGHGTITISYSFSNGIQGVEHPSPGQAYAGTHRVAYLPDSPEGREVLRLLQTCF 303
            CI     R  P CP CG  Y V+ G  P GTM V  +    CP  G E HGTI ISY F +G QG +HP+PG+ Y GT R A+LPD+PEG E+LRLLQ CF
Sbjct:    3 CIRMALNRK-PVCPCCGVAYAVVTGDMPQGTMQVDRAPVGGCPLAGHEAHGTIFISYQFPSGTQGPQHPNPGRPYHGTSRFAFLPDTPEGNEMLRLLQICF 102          
BLAST of mRNA_P-wetherbeei_contig18909.1.1 vs. uniprot
Match: A0A1S3IUP6_LINUN (RING-type E3 ubiquitin transferase n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IUP6_LINUN)

HSP 1 Score: 117 bits (294), Expect = 1.290e-28
Identity = 59/101 (58.42%), Postives = 67/101 (66.34%), Query Frame = 1
Query:    1 RRCIIQTFKRMGPKCPTCGKGYGVLRGTQPPGTMTVGTSDRHSCPGFEGHGTITISYSFSNGIQGVEHPSPGQAYAGTHRVAYLPDSPEGREVLRLLQTCF 303
            + CI   FK   P CPTCG  YG L G  P GTMTV + +    PG  G GTI I+YSFS GIQ  +HP+PG+ Y GT RVAYLPDSPEGR+VL LLQ  F
Sbjct: 1593 KECIDNCFKLHKPACPTCGTLYGTLTGNMPEGTMTV-SKEWAPLPGHGGFGTIVITYSFSGGIQQDDHPNPGRHYRGTTRVAYLPDSPEGRKVLNLLQKAF 1692          
BLAST of mRNA_P-wetherbeei_contig18909.1.1 vs. uniprot
Match: A0A6G0IJ93_LARCR (E3 ubiquitin-protein ligase n=2 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0IJ93_LARCR)

HSP 1 Score: 116 bits (290), Expect = 1.570e-28
Identity = 56/101 (55.45%), Postives = 65/101 (64.36%), Query Frame = 1
Query:    1 RRCIIQTFKRMGPKCPTCGKGYGVLRGTQPPGTMTVGTSDRHSCPGFEGHGTITISYSFSNGIQGVEHPSPGQAYAGTHRVAYLPDSPEGREVLRLLQTCF 303
            R C+ Q F    P CPTCGK YGVL GTQP G     T    S PG+E +GT+TI Y   NGIQ  EHP PGQ Y G  R AYLPDSPEG+E+++LL+  F
Sbjct:  307 RNCLKQAFGYK-PVCPTCGKLYGVLTGTQPDGGKMTVTKSSSSLPGYEKYGTLTIHYYIPNGIQKEEHPQPGQQYEGVSRTAYLPDSPEGKEIVKLLKRAF 406          
BLAST of mRNA_P-wetherbeei_contig18909.1.1 vs. uniprot
Match: H3CAI3_TETNG (E3 ubiquitin-protein ligase n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3CAI3_TETNG)

HSP 1 Score: 110 bits (274), Expect = 3.160e-28
Identity = 54/99 (54.55%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    7 CIIQTFKRMGPKCPTCGKGYGVLRGTQPPGTMTVGTSDRHSCPGFEGHGTITISYSFSNGIQGVEHPSPGQAYAGTHRVAYLPDSPEGREVLRLLQTCF 303
            C+ + F +  P CPTCG+ YGVLRGTQP G     +    S PG+E +GTI I YS  +GIQ  EHPSPG+ Y+G  R A+LPD PEGR VLRLL+  F
Sbjct:   36 CLGRAFLQK-PVCPTCGRVYGVLRGTQPEGGRMEVSRTHSSLPGYEQYGTIVIRYSIPSGIQQEEHPSPGEPYSGASRRAFLPDCPEGRRVLRLLRKAF 133          
BLAST of mRNA_P-wetherbeei_contig18909.1.1 vs. uniprot
Match: UPI001CF4003F (probable E3 ubiquitin-protein ligase DTX3 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF4003F)

HSP 1 Score: 112 bits (281), Expect = 3.520e-28
Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 1
Query:    7 CIIQTFKRMGPKCPTCGKGYGVLRGTQPPGTMTVGTSDRHSCPGFEGHGTITISYSFSNGIQGVEHPSPGQAYAGTHRVAYLPDSPEGREVLRLLQTCF 303
            C+ Q       +CP C +  G LRG QPPG MT     + S PG+EG+GTI I+YSF +GIQG EHP+PGQ+Y GT RVAYLP++PEG EVL+LL+  F
Sbjct:  152 CLQQALDACN-RCPVCQEPQGALRGNQPPGNMTSRVIPQ-SVPGYEGYGTIVINYSFQSGIQGREHPNPGQSYGGTSRVAYLPNTPEGCEVLQLLRRAF 248          
BLAST of mRNA_P-wetherbeei_contig18909.1.1 vs. uniprot
Match: A0A8C5EMD3_9TELE (E3 ubiquitin-protein ligase n=1 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5EMD3_9TELE)

HSP 1 Score: 114 bits (284), Expect = 9.070e-28
Identity = 56/99 (56.57%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    7 CIIQTFKRMGPKCPTCGKGYGVLRGTQPPGTMTVGTSDRHSCPGFEGHGTITISYSFSNGIQGVEHPSPGQAYAGTHRVAYLPDSPEGREVLRLLQTCF 303
            C+ Q F+   P CPTCG  YGVL+GTQP G     T  R S PGFE +GTI ISY    G+QG EHP+PGQ Y G +R AYLPDS EG+ VL+LL+  F
Sbjct:  287 CLDQAFQYK-PVCPTCGALYGVLKGTQPKGGRMSVTKMRESLPGFEKYGTIVISYFIPGGVQGQEHPNPGQHYDGLNRAAYLPDSTEGKAVLKLLERAF 384          
BLAST of mRNA_P-wetherbeei_contig18909.1.1 vs. uniprot
Match: A0A3Q3F278_9LABR (E3 ubiquitin-protein ligase n=1 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3F278_9LABR)

HSP 1 Score: 108 bits (271), Expect = 9.660e-28
Identity = 53/101 (52.48%), Postives = 65/101 (64.36%), Query Frame = 1
Query:    1 RRCIIQTFKRMGPKCPTCGKGYGVLRGTQPPGTMTVGTSDRHSCPGFEGHGTITISYSFSNGIQGVEHPSPGQAYAGTHRVAYLPDSPEGREVLRLLQTCF 303
            R C+ + F    P CPTCG  YGVL GTQP G     T+   S PG+E +GT+ I+Y   +GIQ  EHP+PGQ Y G +R AYLPDS EGR +L+LLQ  F
Sbjct:   39 RDCLKKAFTYK-PICPTCGALYGVLTGTQPDGGTMKVTTAPSSLPGYESYGTVIINYYIPSGIQNKEHPNPGQPYEGVYRTAYLPDSTEGRHILKLLQRAF 138          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18909.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAV4_9STRA5.500e-3263.22RING-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
D8LIP8_ECTSI8.570e-3260.40RING-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
UPI001B887A1A4.740e-3057.84E3 ubiquitin-protein ligase DTX4-like n=1 Tax=Giga... [more]
A0A7S2XY22_9STRA5.050e-2953.47RING-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A1S3IUP6_LINUN1.290e-2858.42RING-type E3 ubiquitin transferase n=2 Tax=Lingula... [more]
A0A6G0IJ93_LARCR1.570e-2855.45E3 ubiquitin-protein ligase n=2 Tax=Larimichthys c... [more]
H3CAI3_TETNG3.160e-2854.55E3 ubiquitin-protein ligase n=1 Tax=Tetraodon nigr... [more]
UPI001CF4003F3.520e-2855.56probable E3 ubiquitin-protein ligase DTX3 n=1 Tax=... [more]
A0A8C5EMD3_9TELE9.070e-2856.57E3 ubiquitin-protein ligase n=1 Tax=Gouania willde... [more]
A0A3Q3F278_9LABR9.660e-2852.48E3 ubiquitin-protein ligase n=1 Tax=Labrus bergylt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18909contigP-wetherbeei_contig18909:160..763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog215358.XP_010744045.1
PFAMszf-C3HC4_2,zf-RING_2,zf-RING_UBOX
Model size303
Max annot lvl33208|Metazoa
KEGG koko:K06058
KEGG Pathwayko04330,map04330
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.21e-27
EggNOG OGs2CTH7@1|root,2RGAW@2759|Eukaryota,39U1W@33154|Opisthokonta,3BFHR@33208|Metazoa,3CSFB@33213|Bilateria,482DV@7711|Chordata,495PE@7742|Vertebrata,49YUG@7898|Actinopterygii
EC2.3.2.27
DescriptionSi dkey-3h3.3
Cds size273
COG categoryO
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186158.6726213-CDS-P-wetherbeei_contig18909:159..2701683186158.6726213-CDS-P-wetherbeei_contig18909:159..270Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18909 160..270 -
1683186158.6835926-CDS-P-wetherbeei_contig18909:571..7331683186158.6835926-CDS-P-wetherbeei_contig18909:571..733Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18909 572..733 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186158.692341-UTR-P-wetherbeei_contig18909:733..7631683186158.692341-UTR-P-wetherbeei_contig18909:733..763Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18909 734..763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18909.1.1prot_P-wetherbeei_contig18909.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18909 160..733 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18909.1.1

>prot_P-wetherbeei_contig18909.1.1 ID=prot_P-wetherbeei_contig18909.1.1|Name=mRNA_P-wetherbeei_contig18909.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
MGPKCPTCGKGYGVLRGTQPPGTMTVGTSDRHSCPGFEGHGTITISYSFS
NGIQGVEHPSPGQAYAGTHRVAYLPDSPEGREVLRLLQTCF
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mRNA from alignment at P-wetherbeei_contig18909:160..763-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18909.1.1 ID=mRNA_P-wetherbeei_contig18909.1.1|Name=mRNA_P-wetherbeei_contig18909.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=604bp|location=Sequence derived from alignment at P-wetherbeei_contig18909:160..763- (Phaeothamnion wetherbeei SAG_119_79)
CGCAGGTGCATCATCCAGACCTTCAAGCGGATGGGTCCCAAGTGCCCGAC CTGCGGAAAGGGCTACGGTGTGCTCCGCGGCACGCAGCCGCCGGGCACCA TGACAGTCGGCACGTCGGACCGTCACAGCTGCCCGGGCTTCGAGGGCCAC GGCACCATCACCATCTCCTACTCGTTCAGCAACGGCATCCAGGTCTCATG TGAACTTTTGACAGAGGCGGCCTCCGGAATTATTCGTCAAAGTTTGGGAA AGAGGAATCATCTGGGGGTTGCATGGAGAATGGCGTGGCAGACGACAGGC ATGGCACCTAGGATCTGCCGGTTCGAACGTGTTCCACTCTTTCTTCTTAC TTTGTTTTCCGCGTCCGTCGCACTTCTGTGCCATCTATCCGTGCGGTGTT GTCATTGACGACGCCGCCGTTGCGTTTGCCGCGCCTCATCACGTCTTTTC TCATAATATCTCTTTCAATCCGTGCCACCTGTTCTTTTCTCAGGGCGTGG AACACCCGAGCCCGGGGCAGGCGTACGCTGGCACGCACCGCGTGGCGTAC CTCCCTGACTCGCCCGAGGGGCGTGAGGTGCTACGACTCTTGCAGACATG CTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18909:160..763-

>mRNA_P-wetherbeei_contig18909.1.1 ID=mRNA_P-wetherbeei_contig18909.1.1|Name=mRNA_P-wetherbeei_contig18909.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig18909:160..763- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTCCCAAGTGCCCGACCTGCGGAAAGGGCTACGGTGTGCTCCGCGG
CACGCAGCCGCCGGGCACCATGACAGTCGGCACGTCGGACCGTCACAGCT
GCCCGGGCTTCGAGGGCCACGGCACCATCACCATCTCCTACTCGTTCAGC
AACGGCATCCAGGGCGTGGAACACCCGAGCCCGGGGCAGGCGTACGCTGG
CACGCACCGCGTGGCGTACCTCCCTGACTCGCCCGAGGGGCGTGAGGTGC
TACGACTCTTGCAGACATGCTTC
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