mRNA_P-wetherbeei_contig18884.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18884.2.1
Unique NamemRNA_P-wetherbeei_contig18884.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18884.2.1 vs. uniprot
Match: A0A7K1B6F7_9ACTN (DNA helicase n=2 Tax=root TaxID=1 RepID=A0A7K1B6F7_9ACTN)

HSP 1 Score: 134 bits (338), Expect = 3.860e-34
Identity = 79/130 (60.77%), Postives = 93/130 (71.54%), Query Frame = 1
Query:    1 SSAVSAEQIAEEGRLLYVALTRASSRLVITHAATRRNAPAAPSPWLAAVEATTEADRPAPPPVV--RARAAPDPMVPMRAWRSSVARAAGVVDIAVCSDRVLRSLLDDPPETTPALAERLGISVTAAQRL 384
            SSA +A Q AEE RLLYVALTRAS  LV+T AA RR+   APS WL AV AT E +RP PPP V  R  A PDPM P+R WR++VARAAGV   AVC+D+VLR LL  PP  T  +A RLG+ ++AA+RL
Sbjct:  502 SSATTAAQRAEEARLLYVALTRASDTLVVTWAARRRDVSGAPSAWLEAVAATIEVERPLPPPAVLRRTGAPPDPMAPLRDWRAAVARAAGVEARAVCTDQVLRGLLASPPRDTTEVARRLGLGLSAAERL 631          
BLAST of mRNA_P-wetherbeei_contig18884.2.1 vs. uniprot
Match: A0A7X9KLX6_9ACTN (DNA helicase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9KLX6_9ACTN)

HSP 1 Score: 127 bits (318), Expect = 2.220e-33
Identity = 72/132 (54.55%), Postives = 92/132 (69.70%), Query Frame = 1
Query:    4 SAVSAEQIAEEGRLLYVALTRASSRLVITHAATRRNAPAAPSPWLAAVEATTEADRPAPPPVVRARAAPDPMVPMRAWRSSVARAAGVVDIAVCSDRVLRSLLDDPPETTPALAERLGISVTAAQRLTLPPS 399
            SA S  Q+AEE RL YVA+TRA+  L++TH A R+  PAAPS WL AV  +T  D PAPPP  R+R   DP++P+R WR+++AR +G  ++AVCSDRVLRSL + PP     LA RLGI+ TAA RL   P+
Sbjct:  146 SAGSQAQLAEEARLFYVAITRAAQHLLVTHCAQRQRKPAAPSRWLQAVTDSTALDVPAPPPT-RSRLPTDPLLPLREWRAAIARVSGQPELAVCSDRVLRSLAETPPADAAELARRLGITETAAARLRPLPT 276          
BLAST of mRNA_P-wetherbeei_contig18884.2.1 vs. uniprot
Match: A0A6I3EWW3_9ACTN (DNA helicase n=2 Tax=root TaxID=1 RepID=A0A6I3EWW3_9ACTN)

HSP 1 Score: 112 bits (281), Expect = 2.170e-26
Identity = 66/128 (51.56%), Postives = 86/128 (67.19%), Query Frame = 1
Query:    1 SSAVSAEQIAEEGRLLYVALTRASSRLVITHAATRRNAPAAPSPWLAAVEATTEADRPAPPPVVRARAAPDPMVPMRAWRSSVARAAGVVDIAVCSDRVLRSLLDDPPETTPALAERLGISVTAAQRL 384
            +SA S  Q+AEE RL YVA+TRA+  L ITHA++R   P APS WLAAV A+   D    PP  R  +  DP+  +  WR+++ARA+G  D +VC+DRVLRSL  +PP +   LA+RLGI+ TAA RL
Sbjct:  453 ASASSTAQLAEEARLFYVAITRAAHDLTITHASSRHGKPTAPSRWLAAVAASGAGDEVVVPPT-RPISVADPLAALHDWRAAIARASGQPDTSVCTDRVLRSLAAEPPTSAAELAQRLGITETAAARL 579          
BLAST of mRNA_P-wetherbeei_contig18884.2.1 vs. uniprot
Match: A0A539DVD7_9ACTN (DNA helicase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539DVD7_9ACTN)

HSP 1 Score: 108 bits (270), Expect = 6.830e-25
Identity = 69/132 (52.27%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    1 SSAVSAEQIAEEGRLLYVALTRASSRLVITHAATRRNAPAAPSPWLAAVEATTEADRPAPPPVVRA--RAAP--DPMVPMRAWRSSVARAAGVVDIAVCSDRVLRSLLDDPPETTPALAERLGISVTAAQRL 384
            +SA    Q AEE RLLYVALTRA   LV+T A  R  +P  PSPWL AV A    D    P +  A  R AP  DP+  +R WRS+VARA  V D+AVC DRVLRSLL D P     L +RLG+  +AA+RL
Sbjct:  431 ASASGEAQRAEEARLLYVALTRAEDELVVTSARARNGSPTGPSPWLLAVRAANPPDVTRGPAIAEASQRPAPVVDPLDTLRRWRSTVARAGSVADVAVCPDRVLRSLLADRPADATELGDRLGMGRSAAERL 562          
BLAST of mRNA_P-wetherbeei_contig18884.2.1 vs. uniprot
Match: A0A7Y2EWA6_9ACTN (DNA helicase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y2EWA6_9ACTN)

HSP 1 Score: 73.2 bits (178), Expect = 1.370e-12
Identity = 52/128 (40.62%), Postives = 68/128 (53.12%), Query Frame = 1
Query:    4 SAVSAEQIAEEGRLLYVALTRASSRLVITHAATRRNAPAAPSPWLAAVEATTEADRPAPPPVVRARAAPDPMVP-MRAWRSSVARAAGVVDIAVCSDRVLRSLLDDPPETTPALAERLGISVTAAQRL 384
            SA +    AEEGRLLYVA TRA+ RLV+T A  R       SP++A ++ T     P P  + R R + DP++  +R WR   AR AGV+   +CSDR L ++    P T   LAE        A RL
Sbjct:  196 SATTVATRAEEGRLLYVATTRATDRLVLTAAERRAGYARTVSPFIAELDVTEPEALPPPSALRRRRRSVDPLLAALRQWREETARTAGVLPAQLCSDRDLSAIAARRPATAEDLAEATTFGTIMAHRL 323          
BLAST of mRNA_P-wetherbeei_contig18884.2.1 vs. uniprot
Match: A0A524B2C2_9ACTN (DNA helicase n=1 Tax=Acidimicrobiales bacterium mtb01 TaxID=1967499 RepID=A0A524B2C2_9ACTN)

HSP 1 Score: 67.8 bits (164), Expect = 1.500e-10
Identity = 54/136 (39.71%), Postives = 70/136 (51.47%), Query Frame = 1
Query:    1 SSAVSAEQIAEEGRLLYVALTRASSRLVITHAATRRNAPAAPSPWLAAVEATTEADRPAPPPV-----VRARAAPDPMVPMRA----WRSSVARAAGVVDIAVCSDRVLRSLLDDPPETTPALAERLGISVTAAQR 381
            SSA +  ++AEE RL YVA+TRAS RLV+T A +RR    +PSP+L A     + DR AP P      V  R  P P  P+ A    WR   AR++ V    +CSD  +  +    P T   LAE  G+    A R
Sbjct:  521 SSARTGAEVAEEMRLSYVAITRASDRLVVTRAESRRGRRTSPSPYLDAFP--PDPDREAPSPEFLAGQVARRIEPTPSDPIAARLFEWRDQAARSSRVDPRLICSDATIELIARTKPSTIDELAEIPGVGRPLAHR 654          
BLAST of mRNA_P-wetherbeei_contig18884.2.1 vs. uniprot
Match: A0A2E3TV53_9ACTN (DNA helicase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A2E3TV53_9ACTN)

HSP 1 Score: 65.5 bits (158), Expect = 9.610e-10
Identity = 49/129 (37.98%), Postives = 65/129 (50.39%), Query Frame = 1
Query:    4 SAVSAEQIAEEGRLLYVALTRASSRLVITHAATRRNAPAAPSPWLAAVEATTEADRPAPPPVVRARAAPDPMV--PMRAWRSSVARAAGVVDIAVCSDRVLRSLLDDPPETTPALAERLGISVTAAQRL 384
            SA + E  AEE RLLYVA+TRAS RLV+T +  R      PSP++  ++ T  A  P P  + R R +   +    +R WR+  AR A V+   +CSDR L S+    P T   L          A RL
Sbjct:  513 SATTKEAKAEEARLLYVAVTRASDRLVLTRSERRGGYARTPSPFVVDLDFTEPAAAPLPRELHRKRRSQVDLTLSALRTWRNESARKADVLPSQLCSDRDLNSIASSKPTTVAELEANTSFGPIMAARL 641          
BLAST of mRNA_P-wetherbeei_contig18884.2.1 vs. uniprot
Match: A0A3C2B2D2_9ACTN (DNA helicase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B2D2_9ACTN)

HSP 1 Score: 64.3 bits (155), Expect = 2.370e-9
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    1 SSAVSAEQIAEEGRLLYVALTRASSRLVITHAATRRNAPAAPSPWLAAVEATTEADRPAPPPVVR 195
            +SA S  Q+AEE RLLYVA+TRAS +LV++ AA R    + PS WL AV AT  AD PAPPP  R
Sbjct:  480 ASAASPAQMAEEARLLYVAITRASHQLVLSAAAQRNGRASEPSRWLQAVAATAAADAPAPPPTAR 544          
BLAST of mRNA_P-wetherbeei_contig18884.2.1 vs. uniprot
Match: A0A2G6K6N4_9ACTN (DNA helicase n=1 Tax=Ilumatobacter coccineus TaxID=467094 RepID=A0A2G6K6N4_9ACTN)

HSP 1 Score: 57.8 bits (138), Expect = 1.150e-7
Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = 1
Query:   28 AEEGRLLYVALTRASSRLVITHAATRRNAPAAPSPWLAAVEATTEADRPAPPPVVRARAAPDPMV--PMRAWRSSVARAAGVVDIAVCSDRVLRSLLDDPPETTPALAERLGISVTAAQR 381
            AEE RLLYVA+TRA+ RL I  +  R N     +P+L  +    +   P P  +V    +   ++   +RAWRS+ A+ +G++  AVCSD+ L  + D  P +   L+   GI    A R
Sbjct:   44 AEEARLLYVAITRATDRLTIHWSRRRANYQRRCTPFLEGLTIERQPAVPRPDSLVWPSRSERSVILDRLRAWRSTTAQVSGILPEAVCSDQALARIADAQPSSATELSTVTGIGPITANR 163          
BLAST of mRNA_P-wetherbeei_contig18884.2.1 vs. uniprot
Match: A0A381XBI1_9ZZZZ (DNA helicase n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381XBI1_9ZZZZ)

HSP 1 Score: 58.2 bits (139), Expect = 3.440e-7
Identity = 56/139 (40.29%), Postives = 67/139 (48.20%), Query Frame = 1
Query:   19 EQIAEEGRLLYVALTRASSRLVITHAATRRNAPAA----PSPWLAAVEATTEA-DRPAPP--PVVRARAA-------PDPMVP----MRAWRSSVARAAGVVDIAVCSDRVLRSLLDDPPETTPALAERLGISVTAAQR 381
            E +AEE RLLYVALTRA   L  + AA RR A       PSPWL  + A  E  +RP  P     RAR A       P P  P    +R WR + ARAA V    + ++  L +LL+  P T   L E  GI    A R
Sbjct:  522 EAVAEERRLLYVALTRAKDNLYCSWAAERRFANRTSNRNPSPWLENLAAAIEGLERPLQPRDQGSRARTARQRTGRTPPPDTPGIAALREWRKTAARAADVPAYVIFNNTTLETLLERRPATRADLLEISGIGPVKADR 660          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18884.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A7K1B6F7_9ACTN3.860e-3460.77DNA helicase n=2 Tax=root TaxID=1 RepID=A0A7K1B6F7... [more]
A0A7X9KLX6_9ACTN2.220e-3354.55DNA helicase n=1 Tax=Actinomycetia bacterium TaxID... [more]
A0A6I3EWW3_9ACTN2.170e-2651.56DNA helicase n=2 Tax=root TaxID=1 RepID=A0A6I3EWW3... [more]
A0A539DVD7_9ACTN6.830e-2552.27DNA helicase (Fragment) n=1 Tax=Acidimicrobiaceae ... [more]
A0A7Y2EWA6_9ACTN1.370e-1240.63DNA helicase n=1 Tax=Ilumatobacter sp. TaxID=19674... [more]
A0A524B2C2_9ACTN1.500e-1039.71DNA helicase n=1 Tax=Acidimicrobiales bacterium mt... [more]
A0A2E3TV53_9ACTN9.610e-1037.98DNA helicase n=1 Tax=Ilumatobacter sp. TaxID=19674... [more]
A0A3C2B2D2_9ACTN2.370e-958.46DNA helicase (Fragment) n=1 Tax=Acidimicrobiaceae ... [more]
A0A2G6K6N4_9ACTN1.150e-735.00DNA helicase n=1 Tax=Ilumatobacter coccineus TaxID... [more]
A0A381XBI1_9ZZZZ3.440e-740.29DNA helicase n=1 Tax=marine metagenome TaxID=40817... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18884contigP-wetherbeei_contig18884:913..1320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1313172.YM304_23340
Preferred nameuvrD2
PFAMsHRDC,UvrD-helicase,UvrD_C
Model size408
Max annot lvl84992|Acidimicrobiia
KEGG koko:K03657
KEGG Pathwayko03420,ko03430,map03420,map03430
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.94e-07
EggNOG OGsCOG0210@1|root,COG0349@1|root,COG0210@2|Bacteria,COG0349@2|Bacteria,2GKRW@201174|Actinobacteria,4CNM0@84992|Acidimicrobiia
EC3.6.4.12
DescriptionUvrD-like helicase C-terminal domain
Cds size408
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186157.7417386-CDS-P-wetherbeei_contig18884:912..13201683186157.7417386-CDS-P-wetherbeei_contig18884:912..1320Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18884 913..1320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18884.2.1prot_P-wetherbeei_contig18884.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18884 913..1320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18884.2.1

>prot_P-wetherbeei_contig18884.2.1 ID=prot_P-wetherbeei_contig18884.2.1|Name=mRNA_P-wetherbeei_contig18884.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
SSAVSAEQIAEEGRLLYVALTRASSRLVITHAATRRNAPAAPSPWLAAVE
ATTEADRPAPPPVVRARAAPDPMVPMRAWRSSVARAAGVVDIAVCSDRVL
RSLLDDPPETTPALAERLGISVTAAQRLTLPPSLR*
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mRNA from alignment at P-wetherbeei_contig18884:913..1320-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18884.2.1 ID=mRNA_P-wetherbeei_contig18884.2.1|Name=mRNA_P-wetherbeei_contig18884.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig18884:913..1320- (Phaeothamnion wetherbeei SAG_119_79)
TCGTCCGCGGTGTCCGCCGAGCAGATCGCCGAGGAGGGCCGGCTGCTCTA CGTCGCGCTCACCCGCGCCTCGTCGCGACTCGTCATCACCCACGCAGCCA CCCGACGGAACGCACCGGCCGCGCCGAGCCCGTGGCTGGCCGCGGTCGAG GCCACCACCGAAGCCGACCGACCCGCTCCCCCACCTGTGGTGCGCGCTCG AGCGGCTCCGGATCCGATGGTGCCGATGCGCGCCTGGCGCAGCTCCGTCG CTCGCGCTGCGGGGGTGGTCGACATCGCCGTGTGCTCCGACCGTGTGCTG CGATCGTTGCTCGACGACCCACCGGAGACGACGCCGGCGCTGGCCGAGCG GCTGGGCATCAGCGTCACCGCTGCGCAGCGGCTCACCCTCCCACCGTCGC TGCGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18884:913..1320-

>mRNA_P-wetherbeei_contig18884.2.1 ID=mRNA_P-wetherbeei_contig18884.2.1|Name=mRNA_P-wetherbeei_contig18884.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig18884:913..1320- (Phaeothamnion wetherbeei SAG_119_79)
TCGTCCGCGGTGTCCGCCGAGCAGATCGCCGAGGAGGGCCGGCTGCTCTA
CGTCGCGCTCACCCGCGCCTCGTCGCGACTCGTCATCACCCACGCAGCCA
CCCGACGGAACGCACCGGCCGCGCCGAGCCCGTGGCTGGCCGCGGTCGAG
GCCACCACCGAAGCCGACCGACCCGCTCCCCCACCTGTGGTGCGCGCTCG
AGCGGCTCCGGATCCGATGGTGCCGATGCGCGCCTGGCGCAGCTCCGTCG
CTCGCGCTGCGGGGGTGGTCGACATCGCCGTGTGCTCCGACCGTGTGCTG
CGATCGTTGCTCGACGACCCACCGGAGACGACGCCGGCGCTGGCCGAGCG
GCTGGGCATCAGCGTCACCGCTGCGCAGCGGCTCACCCTCCCACCGTCGC
TGCGCTGA
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