mRNA_P-wetherbeei_contig1887.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1887.5.1
Unique NamemRNA_P-wetherbeei_contig1887.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1887.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1887contigP-wetherbeei_contig1887:5011..6450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1184
Hectar predicted targeting categoryother localisation
Exons2
Cds size951
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186157.3029673-UTR-P-wetherbeei_contig1887:5010..52411683186157.3029673-UTR-P-wetherbeei_contig1887:5010..5241Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1887 5011..5241 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186157.310607-CDS-P-wetherbeei_contig1887:5241..60601683186157.310607-CDS-P-wetherbeei_contig1887:5241..6060Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1887 5242..6060 -
1683186157.3178964-CDS-P-wetherbeei_contig1887:6318..64501683186157.3178964-CDS-P-wetherbeei_contig1887:6318..6450Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1887 6319..6450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1887.5.1prot_P-wetherbeei_contig1887.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1887 5242..6450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1887.5.1

>prot_P-wetherbeei_contig1887.5.1 ID=prot_P-wetherbeei_contig1887.5.1|Name=mRNA_P-wetherbeei_contig1887.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=317bp
KSSSVGGNRGDGGNGGNGNKPRSRDREPSQREEDSRNNKGPFKKLEERRQ
RRGSKVLSVHSEDTYAGDRSHSSSGGGGGGGNNGRGRGGGSIGGDDGFGG
SGGGKAPSSDWTGGRAVLVVGKVSPSAEWRASDKRGRDAAGRRPSAKWQS
RPPAPPQRAGRPDQRRSRSVSRDRNRSHSRTGAYAQRPGGGRSRSDCSPS
RGESCRCGADERSLSRRGQVSRSRRHGHGSGSTYGQCCDHAWERQRSADR
EERGRNGRSAGMTASSTEANWIFSRHWQGRCEERDDAGVGSGGSGQHKSG
RGDGADGGGGSGGSVW*
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mRNA from alignment at P-wetherbeei_contig1887:5011..6450-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1887.5.1 ID=mRNA_P-wetherbeei_contig1887.5.1|Name=mRNA_P-wetherbeei_contig1887.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1440bp|location=Sequence derived from alignment at P-wetherbeei_contig1887:5011..6450- (Phaeothamnion wetherbeei SAG_119_79)
AAAAGCAGCAGTGTAGGCGGGAACCGCGGCGACGGCGGCAATGGCGGCAA
TGGCAACAAGCCGCGCTCGCGAGATCGCGAGCCATCCCAACGAGAGGAGG
ACAGCCGAAATAACAAAGGACCCTTCAAAAAGGTGAGTACGAAAAGAAAG
CCTTGTGTGCCGCTGGTGTCACCGTTGATTGCGCGCCTTTCATCGATTCA
GTTTTGTACTGCTTAAAGCGTTTGAACAGCCCCCTTGCAACTGGCGTCGG
CCTTAGCGGACGTCCCTGCATTAGATGCGGGCAGCTACGCCGACTGCTGT
AAAGCCTAAAGCTTACGAGGAAAACACGGCGCTCTTTTGTTGACTGGTTG
CTGACACGGGCTTTATCCCTTTGCTTCTCCAAACGAGCAGCTTGAGGAAA
GGAGGCAGCGCAGAGGCAGCAAGGTGTTATCCGTGCATTCGGAAGACACC
TATGCGGGCGATCGAAGTCACAGCAGCAGCGGCGGTGGTGGCGGGGGTGG
CAACAATGGCAGGGGTCGCGGCGGTGGCAGCATTGGCGGCGACGATGGCT
TTGGCGGCAGCGGCGGGGGAAAAGCACCATCCAGCGATTGGACTGGCGGT
CGCGCCGTTCTTGTCGTTGGGAAGGTATCACCCAGCGCGGAATGGAGGGC
TTCTGACAAGCGCGGGCGCGATGCTGCGGGTCGCAGGCCCAGCGCGAAGT
GGCAATCTCGCCCGCCGGCGCCGCCGCAGCGGGCGGGGCGGCCGGACCAG
CGTCGCAGCCGGAGCGTCAGCCGTGACCGCAACCGCAGTCACAGTCGCAC
CGGGGCGTATGCCCAGCGACCCGGGGGGGGTCGCAGCCGCAGCGATTGCA
GCCCAAGCCGCGGCGAGAGCTGCCGCTGTGGTGCAGACGAACGCTCGTTG
TCCAGACGGGGGCAGGTCTCCCGCAGCCGTAGGCACGGCCACGGCAGTGG
CTCCACTTACGGCCAATGCTGCGACCATGCGTGGGAACGGCAACGGTCCG
CCGATCGGGAGGAGCGTGGGAGGAATGGCAGGAGCGCAGGGATGACTGCG
AGCAGCACCGAAGCCAATTGGATCTTCTCTCGCCATTGGCAGGGCCGATG
CGAGGAGAGAGACGACGCCGGCGTCGGCAGCGGAGGCAGTGGTCAGCACA
AGAGCGGACGCGGGGACGGAGCTGACGGTGGCGGCGGCAGCGGCGGCAGC
GTGTGGTAGTGAGCTAGTCAAAAGTGGCAGCAATGTGCGTTCCCCGCTGC
GGGCGGAACCTTAGCGCGGTGTGTGTCGTGGTGGAGTGGTTCATCTCAGT
TATGTCCGGCTTTGGTGATGGCCGCTGGGGAAGCGGTCACGAGAGTTGCG
AGATGATACGTGTGGCTTACTGGGAGGGAGGAATTTATGACGTATTAGCC
CGTACCTGGTCTGTGATAATTACTTTTGTGGTTCATCACA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1887:5011..6450-

>mRNA_P-wetherbeei_contig1887.5.1 ID=mRNA_P-wetherbeei_contig1887.5.1|Name=mRNA_P-wetherbeei_contig1887.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=951bp|location=Sequence derived from alignment at P-wetherbeei_contig1887:5011..6450- (Phaeothamnion wetherbeei SAG_119_79)
AAAAGCAGCAGTGTAGGCGGGAACCGCGGCGACGGCGGCAATGGCGGCAA
TGGCAACAAGCCGCGCTCGCGAGATCGCGAGCCATCCCAACGAGAGGAGG
ACAGCCGAAATAACAAAGGACCCTTCAAAAAGCTTGAGGAAAGGAGGCAG
CGCAGAGGCAGCAAGGTGTTATCCGTGCATTCGGAAGACACCTATGCGGG
CGATCGAAGTCACAGCAGCAGCGGCGGTGGTGGCGGGGGTGGCAACAATG
GCAGGGGTCGCGGCGGTGGCAGCATTGGCGGCGACGATGGCTTTGGCGGC
AGCGGCGGGGGAAAAGCACCATCCAGCGATTGGACTGGCGGTCGCGCCGT
TCTTGTCGTTGGGAAGGTATCACCCAGCGCGGAATGGAGGGCTTCTGACA
AGCGCGGGCGCGATGCTGCGGGTCGCAGGCCCAGCGCGAAGTGGCAATCT
CGCCCGCCGGCGCCGCCGCAGCGGGCGGGGCGGCCGGACCAGCGTCGCAG
CCGGAGCGTCAGCCGTGACCGCAACCGCAGTCACAGTCGCACCGGGGCGT
ATGCCCAGCGACCCGGGGGGGGTCGCAGCCGCAGCGATTGCAGCCCAAGC
CGCGGCGAGAGCTGCCGCTGTGGTGCAGACGAACGCTCGTTGTCCAGACG
GGGGCAGGTCTCCCGCAGCCGTAGGCACGGCCACGGCAGTGGCTCCACTT
ACGGCCAATGCTGCGACCATGCGTGGGAACGGCAACGGTCCGCCGATCGG
GAGGAGCGTGGGAGGAATGGCAGGAGCGCAGGGATGACTGCGAGCAGCAC
CGAAGCCAATTGGATCTTCTCTCGCCATTGGCAGGGCCGATGCGAGGAGA
GAGACGACGCCGGCGTCGGCAGCGGAGGCAGTGGTCAGCACAAGAGCGGA
CGCGGGGACGGAGCTGACGGTGGCGGCGGCAGCGGCGGCAGCGTGTGGTA
G
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