mRNA_P-wetherbeei_contig18857.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18857.1.1
Unique NamemRNA_P-wetherbeei_contig18857.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18857.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18857contigP-wetherbeei_contig18857:2..1322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1321
Hectar predicted targeting categoryother localisation
Exons1
Cds size885
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186156.9637845-UTR-P-wetherbeei_contig18857:1..2951683186156.9637845-UTR-P-wetherbeei_contig18857:1..295Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18857 2..295 -
1683186156.9855945-UTR-P-wetherbeei_contig18857:1180..13221683186156.9855945-UTR-P-wetherbeei_contig18857:1180..1322Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18857 1181..1322 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186156.9760325-CDS-P-wetherbeei_contig18857:295..11801683186156.9760325-CDS-P-wetherbeei_contig18857:295..1180Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18857 296..1180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18857.1.1prot_P-wetherbeei_contig18857.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18857 296..1180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18857.1.1

>prot_P-wetherbeei_contig18857.1.1 ID=prot_P-wetherbeei_contig18857.1.1|Name=mRNA_P-wetherbeei_contig18857.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=295bp
MRWWQRAVRTNGRDTSATEMTPTKTRSSAGNLLRREDGQRDGSLRVTSFG
QLYSSAQARNHAARECTACTAACGGRVSLAKQVATAAAAAPAGSGPDVLH
PTYEAAEAARTSAREAEGVLRDLCEATKATNDESVAAVAEAISRSYIAVR
AGLRQRLPPRGHAPVWRRRPCGTPSMSGSYARSCLAGGLSLTHATVMAAT
APMPPPLGAGTMDSYAPWRLLKCGKAWLPCNVPLAGVRTCCLSRSFCRRG
AGIWEVRLGKPVPPSGRALLPRPLQSPGGTPPATGAAGFGSLLC*
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mRNA from alignment at P-wetherbeei_contig18857:2..1322-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18857.1.1 ID=mRNA_P-wetherbeei_contig18857.1.1|Name=mRNA_P-wetherbeei_contig18857.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1321bp|location=Sequence derived from alignment at P-wetherbeei_contig18857:2..1322- (Phaeothamnion wetherbeei SAG_119_79)
GCTCCCTGGACCTGGACTGCTCGAATCGGCGTTCGGTTGCAAGAAGCAGA
AAGTTTGGATTTGGTCGAAATGGTACGGTCGGCGACATCGAGAGCAACAG
CCACAGCCACCTGTGCCTTCCGTGGGTGCGAGACCAAGGTATATGAGATG
GTGGCAGCGCGCTGTGCGCACCAACGGAAGGGACACTTCGGCGACAGAGA
TGACGCCTACTAAGACTCGCTCGTCGGCAGGCAACCTTCTCCGTCGCGAG
GACGGGCAGCGCGATGGCAGCCTCCGAGTGACGTCTTTTGGACAGCTCTA
CAGCTCGGCACAGGCCAGAAACCACGCGGCACGGGAGTGCACCGCGTGCA
CTGCGGCGTGCGGCGGCCGAGTTAGTCTAGCGAAGCAGGTCGCCACTGCG
GCCGCCGCGGCTCCCGCCGGTTCTGGCCCGGACGTGCTGCATCCAACGTA
CGAGGCCGCGGAGGCAGCCAGGACCTCGGCACGGGAGGCCGAAGGCGTCC
TGCGCGACCTCTGTGAGGCGACTAAAGCTACCAATGACGAGTCGGTGGCG
GCAGTAGCCGAGGCCATCAGCCGCAGCTACATTGCCGTCAGAGCCGGCCT
CCGGCAGCGACTGCCTCCCCGTGGTCACGCGCCGGTTTGGCGGCGCAGGC
CGTGTGGGACGCCCTCGATGAGCGGTTCCTACGCCCGGAGCTGCCTGGCT
GGCGGCCTGTCCTTGACGCATGCCACCGTGATGGCGGCGACGGCGCCCAT
GCCGCCACCGCTTGGCGCCGGCACCATGGACTCATACGCTCCCTGGCGCT
TGCTGAAATGCGGCAAGGCCTGGCTGCCTTGCAATGTGCCGCTCGCTGGG
GTGCGTACCTGTTGCCTGAGTCGTAGTTTTTGCCGCCGAGGTGCCGGGAT
CTGGGAAGTGCGGCTGGGAAAGCCCGTTCCTCCATCTGGAAGGGCGCTTC
TGCCCAGGCCCCTTCAATCGCCGGGCGGCACGCCACCAGCAACAGGTGCG
GCTGGATTTGGAAGCCTTTTGTGCTAGCGCTGGACTTCCTCTGCCAGAAA
ACTGCGCTGGTGCCCTCTTGGGCCCATCTTCAAGCCCTCGCAGCGACTAC
CCTGAAACTGCCGGGAAGCTCGCTTCTAGTGGAACAGGCAGACCGGGGCC
GCCGCAAAGGTACGCACGGTTCCTCACTTTCACGTTTCTGTTCACGGTGT
CACAGGTCAGAACCCATTCCTGGCAGCTGGACCTGCCTGTGGGAAAAAGA
TGTGGGGGGGAGGAACTGGCTGGACCTGGCTGGACCGGTGGGAGGGGGTT
CTTGACCTATGTTTTTCACGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18857:2..1322-

>mRNA_P-wetherbeei_contig18857.1.1 ID=mRNA_P-wetherbeei_contig18857.1.1|Name=mRNA_P-wetherbeei_contig18857.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=885bp|location=Sequence derived from alignment at P-wetherbeei_contig18857:2..1322- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGATGGTGGCAGCGCGCTGTGCGCACCAACGGAAGGGACACTTCGGC
GACAGAGATGACGCCTACTAAGACTCGCTCGTCGGCAGGCAACCTTCTCC
GTCGCGAGGACGGGCAGCGCGATGGCAGCCTCCGAGTGACGTCTTTTGGA
CAGCTCTACAGCTCGGCACAGGCCAGAAACCACGCGGCACGGGAGTGCAC
CGCGTGCACTGCGGCGTGCGGCGGCCGAGTTAGTCTAGCGAAGCAGGTCG
CCACTGCGGCCGCCGCGGCTCCCGCCGGTTCTGGCCCGGACGTGCTGCAT
CCAACGTACGAGGCCGCGGAGGCAGCCAGGACCTCGGCACGGGAGGCCGA
AGGCGTCCTGCGCGACCTCTGTGAGGCGACTAAAGCTACCAATGACGAGT
CGGTGGCGGCAGTAGCCGAGGCCATCAGCCGCAGCTACATTGCCGTCAGA
GCCGGCCTCCGGCAGCGACTGCCTCCCCGTGGTCACGCGCCGGTTTGGCG
GCGCAGGCCGTGTGGGACGCCCTCGATGAGCGGTTCCTACGCCCGGAGCT
GCCTGGCTGGCGGCCTGTCCTTGACGCATGCCACCGTGATGGCGGCGACG
GCGCCCATGCCGCCACCGCTTGGCGCCGGCACCATGGACTCATACGCTCC
CTGGCGCTTGCTGAAATGCGGCAAGGCCTGGCTGCCTTGCAATGTGCCGC
TCGCTGGGGTGCGTACCTGTTGCCTGAGTCGTAGTTTTTGCCGCCGAGGT
GCCGGGATCTGGGAAGTGCGGCTGGGAAAGCCCGTTCCTCCATCTGGAAG
GGCGCTTCTGCCCAGGCCCCTTCAATCGCCGGGCGGCACGCCACCAGCAA
CAGGTGCGGCTGGATTTGGAAGCCTTTTGTGCTAG
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