mRNA_P-wetherbeei_contig18838.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18838.1.1
Unique NamemRNA_P-wetherbeei_contig18838.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18838.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18838contigP-wetherbeei_contig18838:24..1321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1298
Hectar predicted targeting categoryother localisation
Exons1
Cds size906
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186156.4298468-UTR-P-wetherbeei_contig18838:23..501683186156.4298468-UTR-P-wetherbeei_contig18838:23..50Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18838 24..50 -
1683186156.4488325-UTR-P-wetherbeei_contig18838:956..13211683186156.4488325-UTR-P-wetherbeei_contig18838:956..1321Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18838 957..1321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186156.4396544-CDS-P-wetherbeei_contig18838:50..9561683186156.4396544-CDS-P-wetherbeei_contig18838:50..956Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18838 51..956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18838.1.1prot_P-wetherbeei_contig18838.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18838 51..956 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18838.1.1

>prot_P-wetherbeei_contig18838.1.1 ID=prot_P-wetherbeei_contig18838.1.1|Name=mRNA_P-wetherbeei_contig18838.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=302bp
MAGRSKPCSARGVGNDVAKVFLIDGITKLEGIGADALGQLRRDLCLLIDA
PGVHNLSTLNATTITKEHTASKREVVSLPLPLLDVTEAAEVLEVTLRNAI
IEWRLPETDVDVTLLKSLAEWLAAAALGHGRTMEYAVNSFGDELESQRAG
WTAGSVFDIEPMMRTMISRLANLHGARVPAGKELVKAAILGKRVWGDDIA
FSNKGVDVSWSDCLRQGILQGCLPDENERTFVPRLSLFSMGAVGKATGLS
GGRGSHLDAILRPSGGRGGVCVPAAFETAHARWECVVRTALNRTGVRIGP
L*
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mRNA from alignment at P-wetherbeei_contig18838:24..1321-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18838.1.1 ID=mRNA_P-wetherbeei_contig18838.1.1|Name=mRNA_P-wetherbeei_contig18838.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1298bp|location=Sequence derived from alignment at P-wetherbeei_contig18838:24..1321- (Phaeothamnion wetherbeei SAG_119_79)
TTTGAACGCGAATCATGGAAGGCGCCGCGATGGAATATGGCCGCGGACGC
CAATATTGTTTTTCCAAGGTTCTCCTGGCGTCGGGAAACATGGCTGCTGC
TCGAGCTGTGCCGAAGCTGCACCGGATCCGAGACGGCGGCGCCGTTCTAC
TTCTTGACCGTGAGCTTCAGCGGCCTGACTCCAATCATGTGGTCTGAGAG
CTGTACCTTGCGCCGCCTCTCCTATCTCCACCGGTCTCTGCCTTGCGACT
CCGCGGCTGGTGTTTTCTGAGGCTTGCTCGATGCCGAGCATTACATGGCA
GGACTTCGTTTCGTCGGCCAGCCTTTCGATCGCATCTGGCGAACTCATTC
ACGCAAACAACTTCGATGGCAGGGCGATCGAAGCCTTGCTCGGCGAGAGG
GGTCGGCAACGATGTTGCAAAGGTCTTTTTGATCGACGGGATCACCAAGT
TGGAGGGAATTGGCGCAGACGCATTGGGTCAGCTGCGCCGCGACCTCTGC
CTGCTCATCGATGCGCCAGGCGTCCATAATTTATCGACGCTGAATGCCAC
GACGATCACGAAGGAGCACACGGCATCGAAACGCGAAGTCGTTTCGCTCC
CCTTGCCCCTGCTGGATGTGACCGAGGCGGCCGAGGTCCTGGAAGTGACG
CTGCGGAATGCAATCATCGAGTGGCGGCTGCCCGAGACTGATGTGGACGT
GACTCTGCTGAAATCCCTGGCGGAATGGCTCGCTGCCGCGGCTCTCGGCC
ACGGCAGGACGATGGAGTACGCCGTCAACTCTTTCGGCGACGAGTTGGAA
AGCCAGCGAGCGGGGTGGACGGCAGGCAGCGTGTTTGACATCGAGCCCAT
GATGCGGACGATGATCTCGCGACTGGCCAACCTCCATGGTGCGCGCGTGC
CGGCGGGAAAGGAACTGGTAAAAGCTGCAATTCTGGGGAAACGAGTGTGG
GGCGACGACATCGCTTTCTCGAACAAAGGCGTCGACGTGTCGTGGTCCGA
CTGCTTAAGGCAAGGCATCCTTCAAGGCTGCTTGCCCGACGAGAACGAGC
GTACATTTGTACCGCGGCTTTCGCTCTTCTCGATGGGTGCTGTCGGTAAG
GCCACCGGTCTTTCTGGCGGCCGCGGCTCTCATCTGGACGCCATCCTTCG
ACCAAGCGGCGGCAGAGGAGGAGTCTGCGTGCCGGCGGCATTCGAAACGG
CGCACGCTCGATGGGAGTGCGTGGTGCGTACTGCCCTCAATAGGACCGGT
GTTCGTATAGGGCCGCTTTAAGTTTTGAAGACACCTCTCGGTTCCCCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18838:24..1321-

>mRNA_P-wetherbeei_contig18838.1.1 ID=mRNA_P-wetherbeei_contig18838.1.1|Name=mRNA_P-wetherbeei_contig18838.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=906bp|location=Sequence derived from alignment at P-wetherbeei_contig18838:24..1321- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGGGCGATCGAAGCCTTGCTCGGCGAGAGGGGTCGGCAACGATGT
TGCAAAGGTCTTTTTGATCGACGGGATCACCAAGTTGGAGGGAATTGGCG
CAGACGCATTGGGTCAGCTGCGCCGCGACCTCTGCCTGCTCATCGATGCG
CCAGGCGTCCATAATTTATCGACGCTGAATGCCACGACGATCACGAAGGA
GCACACGGCATCGAAACGCGAAGTCGTTTCGCTCCCCTTGCCCCTGCTGG
ATGTGACCGAGGCGGCCGAGGTCCTGGAAGTGACGCTGCGGAATGCAATC
ATCGAGTGGCGGCTGCCCGAGACTGATGTGGACGTGACTCTGCTGAAATC
CCTGGCGGAATGGCTCGCTGCCGCGGCTCTCGGCCACGGCAGGACGATGG
AGTACGCCGTCAACTCTTTCGGCGACGAGTTGGAAAGCCAGCGAGCGGGG
TGGACGGCAGGCAGCGTGTTTGACATCGAGCCCATGATGCGGACGATGAT
CTCGCGACTGGCCAACCTCCATGGTGCGCGCGTGCCGGCGGGAAAGGAAC
TGGTAAAAGCTGCAATTCTGGGGAAACGAGTGTGGGGCGACGACATCGCT
TTCTCGAACAAAGGCGTCGACGTGTCGTGGTCCGACTGCTTAAGGCAAGG
CATCCTTCAAGGCTGCTTGCCCGACGAGAACGAGCGTACATTTGTACCGC
GGCTTTCGCTCTTCTCGATGGGTGCTGTCGGTAAGGCCACCGGTCTTTCT
GGCGGCCGCGGCTCTCATCTGGACGCCATCCTTCGACCAAGCGGCGGCAG
AGGAGGAGTCTGCGTGCCGGCGGCATTCGAAACGGCGCACGCTCGATGGG
AGTGCGTGGTGCGTACTGCCCTCAATAGGACCGGTGTTCGTATAGGGCCG
CTTTAA
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