mRNA_P-wetherbeei_contig1883.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1883.4.1
Unique NamemRNA_P-wetherbeei_contig1883.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1883.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1883contigP-wetherbeei_contig1883:3701..6206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1833
Hectar predicted targeting categoryother localisation
Exons3
Cds size1833
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186156.2501516-CDS-P-wetherbeei_contig1883:3700..39461683186156.2501516-CDS-P-wetherbeei_contig1883:3700..3946Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1883 3701..3946 -
1683186156.2643418-CDS-P-wetherbeei_contig1883:4278..56321683186156.2643418-CDS-P-wetherbeei_contig1883:4278..5632Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1883 4279..5632 -
1683186156.2723284-CDS-P-wetherbeei_contig1883:5973..62061683186156.2723284-CDS-P-wetherbeei_contig1883:5973..6206Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1883 5974..6206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1883.4.1prot_P-wetherbeei_contig1883.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1883 3701..6206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1883.4.1

>prot_P-wetherbeei_contig1883.4.1 ID=prot_P-wetherbeei_contig1883.4.1|Name=mRNA_P-wetherbeei_contig1883.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=611bp
RAGNGGSHGGGRGGDGGGGCVGGPLSALQRCWKKTPLPWLRADPLEGAVL
MDTEVQYLLSLRNTLAKVEIGAYYAGESFRDVALDIYQHCGVALVAVWSS
DGAEQPVWSKTTPGLDTSVPGRKQAGEALGSTFDGGIFAATNRGAGGGGK
DKSGSVHGSAIMGVVPAGVMLYPGMLYMVKPGDKGYIVAHMSGGVDGVAE
YCRLRQRRRDLLNSGGRTRLGIGLPGGGGSGRGSIRLGAGGFSAARVAEA
SSDGNGGERSTERKSDRSGGSDTSSSRTNGAAGLGGSAYNGDDEPPKNGT
TVHAGGMPSVPPPMPNGGGGSNSSAPALGRQLRYSRDHDEAAQAPPGEAR
AGGYPGRGSVAGSGGGGGGGGPQQPSLSPIRLRRRRSSLLTVDDDVKSYV
VVITQSLAAVHRLVRALVHMPGVRGASDAPQAALAAAARWLRKQQQEAHA
RVEVVCPFYPWNAAVDRRHEADLRRTLPDGAVHFVRGPLTAKTIALARPV
KARLVCLAAPQATLQSGAGDGGPDDEMIQVLADVLMAVGTHVRVVAALNI
AHYAEQHAVLATRMRRLDDTGTRRLLALRPSDPLVTAGGKGGSSSVPAGL
GASAGTGGKEG
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mRNA from alignment at P-wetherbeei_contig1883:3701..6206-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1883.4.1 ID=mRNA_P-wetherbeei_contig1883.4.1|Name=mRNA_P-wetherbeei_contig1883.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2506bp|location=Sequence derived from alignment at P-wetherbeei_contig1883:3701..6206- (Phaeothamnion wetherbeei SAG_119_79)
AGAGCTGGCAACGGTGGCAGCCACGGCGGCGGCCGCGGCGGCGACGGCGG
CGGCGGCTGCGTCGGCGGGCCGTTGTCGGCACTGCAGCGCTGCTGGAAGA
AGACGCCGCTGCCGTGGCTGCGGGCGGATCCGTTGGAGGGGGCTGTGCTG
ATGGACACCGAGGTGCAGTACCTGCTGTCGCTGCGCAACACGCTGGCCAA
GGTGGAGATCGGCGCCTACTACGCCGGGGAAAGGTGAGGCGGCGGAGGAG
GTTAATGCATCCTGCGGCGAAAAAGGGATGCTCCACGGGGGGTGGGAAGT
AGCGAAACTGGAGAATTAGCCGCCAAACGGCGTGCAGCGGCACCAGAATG
GTTATGACTTCTGGGTGGTCACATCTTTTCCTTTCGCTAGGTCACGAGCC
TCGAGGGTCTGACCCGAACTATTGCAAAATGATGCCATCAGAGAACATGC
GGCATCTCCACTTGTCTGCAGGTCGCCGCCTCTGTCACTCCAAGGAGGAG
CACTCCCCCAGACTGTTGCCTTTCCCTTTCCCCCTTTTCCGTAACCTCCA
AAACCCGAAACCTGTTTCACGCAGCTTCCGCGACGTGGCGCTGGACATCT
ACCAGCATTGCGGAGTCGCTTTGGTCGCCGTCTGGAGTAGTGACGGAGCC
GAGCAGCCCGTCTGGAGCAAGACCACCCCGGGCCTCGACACCTCTGTCCC
GGGCCGCAAGCAGGCCGGCGAAGCACTTGGGAGCACGTTCGACGGCGGAA
TCTTTGCCGCCACCAATCGCGGGGCCGGCGGCGGCGGCAAGGACAAGTCT
GGCAGCGTCCACGGCAGCGCCATCATGGGGGTGGTACCTGCCGGCGTTAT
GCTGTACCCCGGGATGCTCTACATGGTGAAGCCGGGCGACAAGGGGTACA
TTGTGGCGCACATGAGCGGCGGCGTCGATGGCGTGGCGGAATACTGCCGA
TTGCGGCAGCGCCGACGCGACCTCCTGAACTCGGGAGGCAGGACGCGCCT
CGGGATCGGCCTGCCCGGCGGCGGCGGCAGCGGGCGCGGCAGCATCCGGC
TCGGCGCCGGAGGCTTCAGCGCCGCACGGGTCGCAGAGGCGAGCAGCGAC
GGCAACGGCGGCGAGCGCAGCACTGAGCGCAAATCCGACCGGAGCGGCGG
AAGCGACACCAGCAGCAGCCGTACCAATGGCGCTGCCGGCCTCGGCGGCA
GCGCTTACAACGGCGACGACGAGCCACCAAAAAACGGCACCACTGTCCAC
GCCGGAGGAATGCCGTCGGTGCCACCTCCAATGCCGAATGGTGGCGGCGG
CAGCAATTCTTCGGCACCAGCGCTGGGGCGGCAGCTGCGCTACAGCCGCG
ACCATGATGAGGCGGCGCAGGCGCCTCCTGGAGAAGCGCGGGCCGGCGGC
TACCCCGGAAGGGGCAGCGTCGCTGGCAGTGGCGGTGGCGGCGGTGGAGG
CGGACCCCAGCAGCCGAGCCTGAGTCCGATCCGGCTGCGGCGGCGCCGTT
CCAGCCTGCTGACGGTGGACGACGATGTCAAGAGCTATGTCGTCGTCATC
ACGCAGTCGCTGGCGGCCGTCCACCGCCTGGTCCGGGCGCTCGTGCACAT
GCCGGGCGTGCGCGGGGCGAGCGACGCGCCGCAGGCGGCGCTGGCGGCGG
CGGCCCGCTGGCTGCGCAAGCAGCAGCAGGAGGCGCATGCGCGGGTCGAG
GTCGTGTGCCCATTTTACCCGTGGAACGCCGCGGTGGACCGCCGTCACGA
GGCGGACCTTCGCAGGACACTGCCGGACGGCGCCGTGCACTTCGTGCGCG
GGCCGCTGACGGCCAAGACGATCGCGCTGGCGCGGCCGGTCAAGGCGCGG
CTCGTGTGCCTGGCGGCGCCGCAGGCGACGCTGCAGAGCGGCGCTGGCGA
CGGCGGGCCCGACGACGAGATGATCCAGGTGTGTACGCTTGCTTGAATGG
TGGTGGCGTTGTGCTGGAAGGAAACGGGACGTAGGCGTAGGGAGAGAGAC
CTGTATAATCTCATCTGTGTGCGGTTGTACTGAATGAACGGGAAAGGCAT
GCTCTCCGGAGTCGCATGCGAAGCTGTGGATTGCGAGCTGCGGTGCTTTG
ACCCACAGCGTCGCAAGATCGGTGGTACTGTCTCTCCTTTCGGCGCATGA
CACTTCCTTTCACGTTTCTCATTGTATTTTTATGCTTCACCTCCTCTTTG
TTCCCTCTGTCGTGTTCCCTCGATTCTCTTGCTTCGCTCATGCCGCCTAC
CTACGCACAGGTGTTGGCCGACGTGTTGATGGCTGTCGGGACGCACGTCC
GCGTCGTTGCCGCACTCAACATCGCCCACTATGCCGAGCAGCATGCCGTC
CTCGCCACCCGCATGCGGCGCCTCGACGACACCGGCACCCGCCGCCTCCT
GGCGCTGAGGCCCTCCGACCCGCTCGTGACGGCGGGCGGGAAAGGGGGAT
CGTCGTCAGTCCCTGCGGGACTGGGTGCAAGCGCGGGTACGGGAGGGAAG
GAGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1883:3701..6206-

>mRNA_P-wetherbeei_contig1883.4.1 ID=mRNA_P-wetherbeei_contig1883.4.1|Name=mRNA_P-wetherbeei_contig1883.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1833bp|location=Sequence derived from alignment at P-wetherbeei_contig1883:3701..6206- (Phaeothamnion wetherbeei SAG_119_79)
AGAGCTGGCAACGGTGGCAGCCACGGCGGCGGCCGCGGCGGCGACGGCGG
CGGCGGCTGCGTCGGCGGGCCGTTGTCGGCACTGCAGCGCTGCTGGAAGA
AGACGCCGCTGCCGTGGCTGCGGGCGGATCCGTTGGAGGGGGCTGTGCTG
ATGGACACCGAGGTGCAGTACCTGCTGTCGCTGCGCAACACGCTGGCCAA
GGTGGAGATCGGCGCCTACTACGCCGGGGAAAGCTTCCGCGACGTGGCGC
TGGACATCTACCAGCATTGCGGAGTCGCTTTGGTCGCCGTCTGGAGTAGT
GACGGAGCCGAGCAGCCCGTCTGGAGCAAGACCACCCCGGGCCTCGACAC
CTCTGTCCCGGGCCGCAAGCAGGCCGGCGAAGCACTTGGGAGCACGTTCG
ACGGCGGAATCTTTGCCGCCACCAATCGCGGGGCCGGCGGCGGCGGCAAG
GACAAGTCTGGCAGCGTCCACGGCAGCGCCATCATGGGGGTGGTACCTGC
CGGCGTTATGCTGTACCCCGGGATGCTCTACATGGTGAAGCCGGGCGACA
AGGGGTACATTGTGGCGCACATGAGCGGCGGCGTCGATGGCGTGGCGGAA
TACTGCCGATTGCGGCAGCGCCGACGCGACCTCCTGAACTCGGGAGGCAG
GACGCGCCTCGGGATCGGCCTGCCCGGCGGCGGCGGCAGCGGGCGCGGCA
GCATCCGGCTCGGCGCCGGAGGCTTCAGCGCCGCACGGGTCGCAGAGGCG
AGCAGCGACGGCAACGGCGGCGAGCGCAGCACTGAGCGCAAATCCGACCG
GAGCGGCGGAAGCGACACCAGCAGCAGCCGTACCAATGGCGCTGCCGGCC
TCGGCGGCAGCGCTTACAACGGCGACGACGAGCCACCAAAAAACGGCACC
ACTGTCCACGCCGGAGGAATGCCGTCGGTGCCACCTCCAATGCCGAATGG
TGGCGGCGGCAGCAATTCTTCGGCACCAGCGCTGGGGCGGCAGCTGCGCT
ACAGCCGCGACCATGATGAGGCGGCGCAGGCGCCTCCTGGAGAAGCGCGG
GCCGGCGGCTACCCCGGAAGGGGCAGCGTCGCTGGCAGTGGCGGTGGCGG
CGGTGGAGGCGGACCCCAGCAGCCGAGCCTGAGTCCGATCCGGCTGCGGC
GGCGCCGTTCCAGCCTGCTGACGGTGGACGACGATGTCAAGAGCTATGTC
GTCGTCATCACGCAGTCGCTGGCGGCCGTCCACCGCCTGGTCCGGGCGCT
CGTGCACATGCCGGGCGTGCGCGGGGCGAGCGACGCGCCGCAGGCGGCGC
TGGCGGCGGCGGCCCGCTGGCTGCGCAAGCAGCAGCAGGAGGCGCATGCG
CGGGTCGAGGTCGTGTGCCCATTTTACCCGTGGAACGCCGCGGTGGACCG
CCGTCACGAGGCGGACCTTCGCAGGACACTGCCGGACGGCGCCGTGCACT
TCGTGCGCGGGCCGCTGACGGCCAAGACGATCGCGCTGGCGCGGCCGGTC
AAGGCGCGGCTCGTGTGCCTGGCGGCGCCGCAGGCGACGCTGCAGAGCGG
CGCTGGCGACGGCGGGCCCGACGACGAGATGATCCAGGTGTTGGCCGACG
TGTTGATGGCTGTCGGGACGCACGTCCGCGTCGTTGCCGCACTCAACATC
GCCCACTATGCCGAGCAGCATGCCGTCCTCGCCACCCGCATGCGGCGCCT
CGACGACACCGGCACCCGCCGCCTCCTGGCGCTGAGGCCCTCCGACCCGC
TCGTGACGGCGGGCGGGAAAGGGGGATCGTCGTCAGTCCCTGCGGGACTG
GGTGCAAGCGCGGGTACGGGAGGGAAGGAGGGG
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