mRNA_P-wetherbeei_contig1883.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1883.2.1
Unique NamemRNA_P-wetherbeei_contig1883.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1883.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1883contigP-wetherbeei_contig1883:1284..3670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1718
Hectar predicted targeting categoryother localisation
Exons3
Cds size1542
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186156.1974008-UTR-P-wetherbeei_contig1883:1283..14381683186156.1974008-UTR-P-wetherbeei_contig1883:1283..1438Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1883 1284..1438 -
1683186156.2278507-UTR-P-wetherbeei_contig1883:3649..36701683186156.2278507-UTR-P-wetherbeei_contig1883:3649..3670Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1883 3650..3670 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186156.2053561-CDS-P-wetherbeei_contig1883:1438..21561683186156.2053561-CDS-P-wetherbeei_contig1883:1438..2156Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1883 1439..2156 -
1683186156.21292-CDS-P-wetherbeei_contig1883:2530..30301683186156.21292-CDS-P-wetherbeei_contig1883:2530..3030Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1883 2531..3030 -
1683186156.2205513-CDS-P-wetherbeei_contig1883:3325..36491683186156.2205513-CDS-P-wetherbeei_contig1883:3325..3649Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1883 3326..3649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1883.2.1prot_P-wetherbeei_contig1883.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1883 1439..3649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1883.2.1

>prot_P-wetherbeei_contig1883.2.1 ID=prot_P-wetherbeei_contig1883.2.1|Name=mRNA_P-wetherbeei_contig1883.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=514bp
MNHSTHSAGGLSALGSFLGISGWEDHLHFGKGRHNRDLDEASTSPWADDG
DGDDGATEAGLMQQMMQEYFRPRSGGPRPRFMGHFALKNGYKGGEVVLAG
TAEVLLVQAFMVPGLADVVELLLSSGPESNSAGSANGPFSGNCHPSVQDP
PSGGGSGSGGHDGRYSGGGGAGDVKDGAVDEWNHVLGPSSHVHIGSNTSS
VAELFNDGGRAGAAGGSSSLPANGDAASNDATRAFSPPRAAAATPMAGDA
SGESEPFVDRVALPELFWEYAKTYLRRGTYGELTEWLLREEDAMAVGLFR
HWGSEPPDEHDDGGSGGGGGHGGGGGVGHGGGGGGGRSSSGSRGFRDTIA
LVNPSASMLLSRHDEVYVIKRSYPETTSPKLSVQESSVPGGSGGGAFAAG
RRALLSQFSDDSPPWRATVRMSGKFNVGGVAAAALAATKLAGLSTATTAG
APEDSLSPRASRVATALAGVGGGNRVDAGGGGNRVDAGGGGGAPTSVGPA
AGNTQTATAKEEV*
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mRNA from alignment at P-wetherbeei_contig1883:1284..3670-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1883.2.1 ID=mRNA_P-wetherbeei_contig1883.2.1|Name=mRNA_P-wetherbeei_contig1883.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2387bp|location=Sequence derived from alignment at P-wetherbeei_contig1883:1284..3670- (Phaeothamnion wetherbeei SAG_119_79)
CCGGCGTCGGCCGGCGACCTGATGAACCATTCAACCCATTCCGCGGGGGG
CCTAAGCGCGCTCGGCAGTTTTCTGGGCATCTCCGGCTGGGAGGACCACC
TACATTTTGGCAAAGGCCGCCACAACCGCGACCTGGACGAGGCGAGCACT
TCGCCGTGGGCAGACGACGGCGATGGTGATGACGGGGCCACGGAGGCCGG
ACTGATGCAGCAGATGATGCAGGAGTACTTCCGCCCACGCAGCGGCGGAC
CGCGGCCGCGGTTCATGGGTCATTTTGCCCTGAAGAACGGCTACAAGGGC
GGGGAGGTGGTGCTGGCGGGCACCGCCGAGGTGCTGCTTGTCCAGGTGCG
CCGGTGCGCGGCCGCCATCGGTGTGACATGCCGGGCGCCCGCTTTTCGTC
TGTTGCTGTATCTTTTTTTGTTTGCTGCTGCCGGCTGTTGCTGCTGTTGG
TGTAGGCCGCCGCTGTTGTTCGCCGCCCGTTGCTGCTTTCCTTTGGGCGT
ATTTTCGATCTGCGCTTTCCGCTTTGTCACGTTCTAGGCAGCTTGGCTAC
CACACCTCGATCTTACCTAGAACGCTTTCACCTCCTTTCTTCCGCCATTG
TCTGTCGCAACTTATTCTCTCTCCTCCTTTTGATCAAAAGGCGTTTATGG
TCCCGGGCCTTGCCGACGTCGTTGAGCTGCTGCTTTCGTCAGGGCCCGAA
TCCAATAGTGCCGGTAGCGCAAACGGGCCGTTTTCCGGTAACTGCCACCC
GAGCGTCCAAGATCCCCCCAGCGGCGGCGGCTCCGGCAGCGGTGGTCATG
ACGGCAGGTACAGCGGTGGCGGCGGTGCAGGAGACGTGAAGGACGGTGCG
GTGGACGAGTGGAACCATGTTTTGGGCCCGTCTTCTCACGTGCATATCGG
TTCGAATACCAGCAGCGTCGCGGAGCTCTTCAACGACGGCGGGAGAGCTG
GCGCCGCCGGTGGCAGCAGTTCGCTGCCTGCCAATGGCGACGCTGCCAGC
AATGACGCTACGAGGGCATTCTCCCCACCGAGGGCCGCCGCCGCGACTCC
AATGGCTGGCGACGCAAGCGGGGAGAGCGAGCCGTTCGTGGACAGGGTGG
CGCTGCCGGAGCTGTTTTGGGAGTATGCGAAGACGTACTTGTAAGTGGGA
TTGACTGATTCGCAGCCGCAGTGAAGGAAAGTTCGTCTCTGATTTCAGTT
TGTGTGCCATTTCGGCCGGGACCCACGGATTTGACTTGCGTTGTTCGTTT
CGGGATTGCAGGTCTTGTTTTCGCGTGGGCTTCCCTGGGTACCGCAGCTC
CTGCCTTCGGCAGAGAGATCGGGCCACTTTGGCATCTGATTGTCGGGTTC
TCGGCGTTCATCCATCCGATACCGCCTGCTTTTTGGCAATAGGGATTCCG
GCCGTTGTTTCATCGGTCCGTGCCCTTCCTTCGCTATCCCACCGCAATAT
TGGCCATCGTTTCTTGGGTAACCCTCGTTCTGCTTTTCTTTCTGCATCTC
TCTGTGTCCGACAGGCGCCGCGGGACATACGGAGAGCTGACGGAGTGGCT
GCTGCGGGAGGAGGACGCCATGGCGGTGGGCCTCTTCCGGCACTGGGGCA
GCGAGCCGCCGGACGAACACGATGACGGCGGTAGTGGCGGCGGTGGCGGC
CACGGCGGCGGCGGCGGTGTCGGCCATGGCGGCGGTGGCGGCGGCGGCCG
TAGTAGCAGCGGCTCCCGCGGTTTCCGGGACACGATTGCGCTCGTGAACC
CGAGCGCGAGCATGCTACTCTCGCGGCACGACGAGGTCTACGTCATAAAG
CGTTCGTACCCCGAGACGACGTCGCCGAAGCTTAGCGTCCAGGAGAGCTC
CGTTCCGGGTGGCAGCGGTGGCGGCGCGTTCGCGGCGGGGCGGCGGGCGC
TCCTCTCACAGTTCTCAGACGACTCGCCGCCGTGGCGCGCAACCGTGAGG
ATGAGCGGGAAGTTCAACGTCGGCGGCGTCGCCGCCGCTGCCTTGGCGGC
GACCAAGCTGGCTGGGCTTTCGACAGCGACGACGGCGGGGGCGCCCGAGG
ACTCACTGTCGCCGCGGGCGAGCAGGGTTGCCACGGCACTGGCAGGGGTG
GGCGGCGGCAACCGCGTCGACGCTGGCGGCGGCGGCAACCGGGTCGACGC
TGGCGGCGGCGGTGGCGCCCCAACCAGCGTCGGGCCGGCCGCCGGGAACA
CACAGACGGCAACCGCGAAAGAAGAGGTTTAGCGGAGCGCTTTAAGGGGG
AGGGTGGGCAGATGCCCTGAAGATATGCTGGACATACTTTATATCGTCCC
AGCAGCCTGGACTCTGCGATATGAACACATTTCAAGCCTTTTGGCAGGAT
GCCGCTAATGCAATGATAATAAATCGCTTCGGTTGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1883:1284..3670-

>mRNA_P-wetherbeei_contig1883.2.1 ID=mRNA_P-wetherbeei_contig1883.2.1|Name=mRNA_P-wetherbeei_contig1883.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1542bp|location=Sequence derived from alignment at P-wetherbeei_contig1883:1284..3670- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCATTCAACCCATTCCGCGGGGGGCCTAAGCGCGCTCGGCAGTTT
TCTGGGCATCTCCGGCTGGGAGGACCACCTACATTTTGGCAAAGGCCGCC
ACAACCGCGACCTGGACGAGGCGAGCACTTCGCCGTGGGCAGACGACGGC
GATGGTGATGACGGGGCCACGGAGGCCGGACTGATGCAGCAGATGATGCA
GGAGTACTTCCGCCCACGCAGCGGCGGACCGCGGCCGCGGTTCATGGGTC
ATTTTGCCCTGAAGAACGGCTACAAGGGCGGGGAGGTGGTGCTGGCGGGC
ACCGCCGAGGTGCTGCTTGTCCAGGCGTTTATGGTCCCGGGCCTTGCCGA
CGTCGTTGAGCTGCTGCTTTCGTCAGGGCCCGAATCCAATAGTGCCGGTA
GCGCAAACGGGCCGTTTTCCGGTAACTGCCACCCGAGCGTCCAAGATCCC
CCCAGCGGCGGCGGCTCCGGCAGCGGTGGTCATGACGGCAGGTACAGCGG
TGGCGGCGGTGCAGGAGACGTGAAGGACGGTGCGGTGGACGAGTGGAACC
ATGTTTTGGGCCCGTCTTCTCACGTGCATATCGGTTCGAATACCAGCAGC
GTCGCGGAGCTCTTCAACGACGGCGGGAGAGCTGGCGCCGCCGGTGGCAG
CAGTTCGCTGCCTGCCAATGGCGACGCTGCCAGCAATGACGCTACGAGGG
CATTCTCCCCACCGAGGGCCGCCGCCGCGACTCCAATGGCTGGCGACGCA
AGCGGGGAGAGCGAGCCGTTCGTGGACAGGGTGGCGCTGCCGGAGCTGTT
TTGGGAGTATGCGAAGACGTACTTGCGCCGCGGGACATACGGAGAGCTGA
CGGAGTGGCTGCTGCGGGAGGAGGACGCCATGGCGGTGGGCCTCTTCCGG
CACTGGGGCAGCGAGCCGCCGGACGAACACGATGACGGCGGTAGTGGCGG
CGGTGGCGGCCACGGCGGCGGCGGCGGTGTCGGCCATGGCGGCGGTGGCG
GCGGCGGCCGTAGTAGCAGCGGCTCCCGCGGTTTCCGGGACACGATTGCG
CTCGTGAACCCGAGCGCGAGCATGCTACTCTCGCGGCACGACGAGGTCTA
CGTCATAAAGCGTTCGTACCCCGAGACGACGTCGCCGAAGCTTAGCGTCC
AGGAGAGCTCCGTTCCGGGTGGCAGCGGTGGCGGCGCGTTCGCGGCGGGG
CGGCGGGCGCTCCTCTCACAGTTCTCAGACGACTCGCCGCCGTGGCGCGC
AACCGTGAGGATGAGCGGGAAGTTCAACGTCGGCGGCGTCGCCGCCGCTG
CCTTGGCGGCGACCAAGCTGGCTGGGCTTTCGACAGCGACGACGGCGGGG
GCGCCCGAGGACTCACTGTCGCCGCGGGCGAGCAGGGTTGCCACGGCACT
GGCAGGGGTGGGCGGCGGCAACCGCGTCGACGCTGGCGGCGGCGGCAACC
GGGTCGACGCTGGCGGCGGCGGTGGCGCCCCAACCAGCGTCGGGCCGGCC
GCCGGGAACACACAGACGGCAACCGCGAAAGAAGAGGTTTAG
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