mRNA_P-wetherbeei_contig18828.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18828.2.1
Unique NamemRNA_P-wetherbeei_contig18828.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18828.2.1 vs. uniprot
Match: A0A2E7QUI8_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7QUI8_9PROT)

HSP 1 Score: 75.9 bits (185), Expect = 1.380e-13
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   76 YEDAAAAYIRRNYTEALELWLPLAEQGNAAAQFNLGAMHENGQGVPRDNAKAEMWYKLAA 255
            Y+    AY   +Y  AL  W PLA+QGNA AQFNLG M++ GQGVP DN KAE WY+ AA
Sbjct:   27 YQKGFTAYKSGDYATALREWTPLAKQGNADAQFNLGLMYDEGQGVPEDNMKAEHWYRFAA 86          
BLAST of mRNA_P-wetherbeei_contig18828.2.1 vs. uniprot
Match: A0A2A5DMJ0_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2A5DMJ0_9PROT)

HSP 1 Score: 77.4 bits (189), Expect = 1.420e-13
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    1 MKTGLQTAFFSLAVFLV---CQPVLAGPYEDAAAAYIRRNYTEALELWLPLAEQGNAAAQFNLGAMHENGQGVPRDNAKAEMWYKLA 252
            MK  +  A FSL V +V     P  A P++D  AAY R +Y  A  L  PLAEQG+A AQ NLG M+  G GVP+D+A+A  WY+ A
Sbjct:    1 MKRTILAALFSLLVCVVLGGATPAYADPFDDGVAAYNRGDYATAFRLLKPLAEQGDADAQINLGVMYRLGLGVPQDDARAVTWYRKA 87          
BLAST of mRNA_P-wetherbeei_contig18828.2.1 vs. uniprot
Match: A0A525W8S3_9BACT (Sel1 repeat family protein n=1 Tax=Nitrospira sp. CG24E TaxID=1985129 RepID=A0A525W8S3_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 1.660e-13
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   28 FSLAVFLV---CQPVLAGPYEDAAAAYIRRNYTEALELWLPLAEQGNAAAQFNLGAMHENGQGVPRDNAKAEMWYKLAA 255
            F  AVF+V        A  YEDA +A  R +YT A +L  PLAEQGNA AQ+NLG ++  G+G+P+D+ +A  WY+ AA
Sbjct:    4 FLFAVFVVVACATGAAADSYEDAVSAADRGDYTRAAQLLRPLAEQGNALAQYNLGVLYRKGRGMPQDDVQARQWYEKAA 82          
BLAST of mRNA_P-wetherbeei_contig18828.2.1 vs. uniprot
Match: UPI00021B280C (sel1 repeat family protein n=1 Tax=Haemophilus haemolyticus TaxID=726 RepID=UPI00021B280C)

HSP 1 Score: 73.9 bits (180), Expect = 1.950e-13
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    4 KTGLQTAFFSLAVFLVCQPVLAGP----YEDAAAAYIRRNYTEALELWLPLAEQGNAAAQFNLGAMHENGQGVPRDNAKAEMWYKLA 252
            KT L +A  + ++F     V A      ++ A  +Y +R+Y +A +LWLPLAEQGN AAQ NLG M+ NGQGV R+ ++A+ W++ A
Sbjct:    5 KTFLTSALLATSIFSFQSTVWADTPEQQFQQAVESYNKRDYQKAFKLWLPLAEQGNVAAQNNLGVMYRNGQGVKRNLSEAKEWFRKA 91          
BLAST of mRNA_P-wetherbeei_contig18828.2.1 vs. uniprot
Match: A0A5J4DRT2_9BACT (Secretory immunoglobulin A-binding protein EsiB n=1 Tax=bacterium MnTg02 TaxID=2080452 RepID=A0A5J4DRT2_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 2.490e-13
Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   67 AGPYEDAAAAYIRRNYTEALELWLPLAEQGNAAAQFNLGAMHENGQGVPRDNAKAEMWYKLAA 255
            AGP ED   A++R +Y  AL L  PLAEQG+A AQFNLG M+  G GVPRD+  A  W  LAA
Sbjct:   24 AGPVEDGTLAFVRGDYATALRLLRPLAEQGDAKAQFNLGVMYVRGAGVPRDHVVAHKWLNLAA 86          
BLAST of mRNA_P-wetherbeei_contig18828.2.1 vs. uniprot
Match: UPI0006935516 (sel1 repeat family protein n=1 Tax=Kingella negevensis TaxID=1522312 RepID=UPI0006935516)

HSP 1 Score: 73.2 bits (178), Expect = 3.020e-13
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   22 AFFSLAVFLVCQPVLAGPYEDAAAAYIRRNYTEALELWLPLAEQGNAAAQFNLGAMHENGQGVPRDNAKAEMWYKLAA 255
            +  + A+  V  PVLA   +   AAY R++YT A ++W  LA QGNAAAQ NLG M+E GQGV ++  +A  WY+  A
Sbjct:    2 SILTAAMLSVAMPVLANNDDQGLAAYNRQDYTTAFKIWSELANQGNAAAQHNLGVMYEQGQGVAQNYQQAVQWYQKVA 79          
BLAST of mRNA_P-wetherbeei_contig18828.2.1 vs. uniprot
Match: A0A3D1XSR0_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Nitrospina sp. TaxID=2024844 RepID=A0A3D1XSR0_9BACT)

HSP 1 Score: 72.8 bits (177), Expect = 3.620e-13
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   25 FFSLAVFLVCQPVLAGPYEDAAAAYIRRNYTEALELWLPLAEQGNAAAQFNLGAMHENGQGVPRDNAKAEMWYKLAAG 258
            FF LAV LV  P  A  +E+   A    +Y +AL    PLA +G+A AQ+NLG M+E G GVP+D+ +A  WY+L+AG
Sbjct:    4 FFLLAVLLVTAPSFANDFEEGLDAIHGTDYDKALAKLRPLASEGHAPAQYNLGVMYEWGNGVPQDDVEAMKWYRLSAG 81          
BLAST of mRNA_P-wetherbeei_contig18828.2.1 vs. uniprot
Match: UPI000ED36927 (sel1 repeat family protein n=2 Tax=Haemophilus influenzae TaxID=727 RepID=UPI000ED36927)

HSP 1 Score: 75.5 bits (184), Expect = 3.810e-13
Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    4 KTGLQTAFFSLAVF----LVCQPVLAGPYEDAAAAYIRRNYTEALELWLPLAEQGNAAAQFNLGAMHENGQGVPRDNAKAEMWYKLA 252
            KT L TA F  ++F          L   ++    AY + NY  A +LWLPLAEQGNA AQ+NLG M+ NG+GV +D  KA  WY+ A
Sbjct:    5 KTLLTTALFGASIFSFQSTAWADTLEQQFQQGLTAYEQSNYQTAFKLWLPLAEQGNAKAQYNLGVMYGNGRGVKQDYFKAVNWYRKA 91          
BLAST of mRNA_P-wetherbeei_contig18828.2.1 vs. uniprot
Match: UPI000E59894C (sel1 repeat family protein n=1 Tax=Haemophilus haemolyticus TaxID=726 RepID=UPI000E59894C)

HSP 1 Score: 75.1 bits (183), Expect = 4.100e-13
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 1
Query:    4 KTGLQTAFFSLAVF----LVCQPVLAGPYEDAAAAYIRRNYTEALELWLPLAEQGNAAAQFNLGAMHENGQGVPRDNAKAEMWYK 246
            KT L TA F  +VF          L   YE    AY + +Y  A +LWLPLAEQGNA+AQFNLG M+ +G+GV +D+ +A  W++
Sbjct:    5 KTLLTTALFGASVFSFHSTAWADTLVQQYEQGLTAYKQSDYQTAFKLWLPLAEQGNASAQFNLGDMYADGRGVKQDDVEAVKWFR 89          
BLAST of mRNA_P-wetherbeei_contig18828.2.1 vs. uniprot
Match: A0A158SXH4_HAEIF (Putative beta-lactamase hcpC n=3 Tax=Haemophilus influenzae TaxID=727 RepID=A0A158SXH4_HAEIF)

HSP 1 Score: 76.3 bits (186), Expect = 5.850e-13
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 1
Query:    4 KTGLQTAFFSLAVF----LVCQPVLAGPYEDAAAAYIRRNYTEALELWLPLAEQGNAAAQFNLGAMHENGQGVPRDNAKAEMWYKLA 252
            KT L TA F +++F          L   ++    AY + NY  A +LWLPLAEQGNA AQ+NLG M+ NG+GV +D  KA  WY+ A
Sbjct:   13 KTLLTTALFGVSIFSFQSTAWADTLEQQFQQGLTAYEQSNYQTAFKLWLPLAEQGNAKAQYNLGVMYGNGRGVKQDYFKAVNWYRKA 99          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18828.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7QUI8_9PROT1.380e-1358.33Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A2A5DMJ0_9PROT1.420e-1348.28Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A525W8S3_9BACT1.660e-1348.10Sel1 repeat family protein n=1 Tax=Nitrospira sp. ... [more]
UPI00021B280C1.950e-1343.68sel1 repeat family protein n=1 Tax=Haemophilus hae... [more]
A0A5J4DRT2_9BACT2.490e-1357.14Secretory immunoglobulin A-binding protein EsiB n=... [more]
UPI00069355163.020e-1346.15sel1 repeat family protein n=1 Tax=Kingella negeve... [more]
A0A3D1XSR0_9BACT3.620e-1347.44Uncharacterized protein (Fragment) n=1 Tax=Nitrosp... [more]
UPI000ED369273.810e-1345.98sel1 repeat family protein n=2 Tax=Haemophilus inf... [more]
UPI000E59894C4.100e-1345.88sel1 repeat family protein n=1 Tax=Haemophilus hae... [more]
A0A158SXH4_HAEIF5.850e-1345.98Putative beta-lactamase hcpC n=3 Tax=Haemophilus i... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18828contigP-wetherbeei_contig18828:608..1306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1122135.KB893135_gene778
PFAMsSel1
Model size699
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07126
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.88e-13
EggNOG OGsCOG0790@1|root,COG0790@2|Bacteria,1MWPA@1224|Proteobacteria,2TR2B@28211|Alphaproteobacteria
DescriptionSel1 domain protein repeat-containing protein
Cds size699
COG categoryC
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186156.1734157-CDS-P-wetherbeei_contig18828:607..13061683186156.1734157-CDS-P-wetherbeei_contig18828:607..1306Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18828 608..1306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18828.2.1prot_P-wetherbeei_contig18828.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18828 608..1306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18828.2.1

>prot_P-wetherbeei_contig18828.2.1 ID=prot_P-wetherbeei_contig18828.2.1|Name=mRNA_P-wetherbeei_contig18828.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=233bp
MKTGLQTAFFSLAVFLVCQPVLAGPYEDAAAAYIRRNYTEALELWLPLAE
QGNAAAQFNLGAMHENGQGVPRDNAKAEMWYKLAAGLGLADAQFTLGVRY
ETGQGVLQNTAEALKWYRLAADQGFTQAQYNLGVIYDNASGVRRDLAEAA
KWYLAASEKGLAAAQAKLGLMHETGRGVRLDYAEAATWYQRAADQGDASA
QGHLGAMYDKGRGVAQDFAKALKWYRLAADQGD
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mRNA from alignment at P-wetherbeei_contig18828:608..1306-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18828.2.1 ID=mRNA_P-wetherbeei_contig18828.2.1|Name=mRNA_P-wetherbeei_contig18828.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=699bp|location=Sequence derived from alignment at P-wetherbeei_contig18828:608..1306- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAACTGGTTTGCAGACGGCATTCTTTAGCTTGGCGGTGTTTTTGGT GTGCCAGCCAGTTCTGGCTGGGCCCTATGAAGATGCGGCTGCCGCCTACA TCCGCCGGAATTACACGGAAGCGCTGGAGCTTTGGCTGCCATTGGCCGAG CAGGGCAATGCCGCGGCCCAATTTAATCTCGGGGCCATGCATGAAAACGG CCAAGGTGTGCCGCGTGACAATGCCAAGGCCGAGATGTGGTATAAACTTG CTGCCGGGCTGGGCCTTGCAGACGCCCAATTCACGCTCGGCGTCCGCTAT GAGACGGGCCAAGGCGTGTTACAGAACACGGCGGAGGCCTTGAAGTGGTA CCGCCTTGCCGCTGATCAGGGGTTTACCCAGGCCCAGTACAATCTTGGGG TTATCTACGACAACGCCAGCGGCGTGCGGCGTGATTTGGCCGAGGCCGCC AAATGGTATCTCGCGGCGTCAGAGAAGGGCTTGGCGGCGGCCCAGGCCAA GCTCGGCCTCATGCACGAGACGGGGCGTGGTGTGCGGTTGGATTATGCCG AAGCTGCCACGTGGTATCAACGCGCCGCCGATCAGGGTGATGCTTCGGCC CAGGGCCATCTAGGGGCAATGTATGACAAGGGCAGGGGCGTCGCCCAGGA CTTCGCCAAGGCCCTGAAGTGGTACCGGCTCGCCGCTGATCAGGGTGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18828:608..1306-

>mRNA_P-wetherbeei_contig18828.2.1 ID=mRNA_P-wetherbeei_contig18828.2.1|Name=mRNA_P-wetherbeei_contig18828.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=699bp|location=Sequence derived from alignment at P-wetherbeei_contig18828:608..1306- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAACTGGTTTGCAGACGGCATTCTTTAGCTTGGCGGTGTTTTTGGT
GTGCCAGCCAGTTCTGGCTGGGCCCTATGAAGATGCGGCTGCCGCCTACA
TCCGCCGGAATTACACGGAAGCGCTGGAGCTTTGGCTGCCATTGGCCGAG
CAGGGCAATGCCGCGGCCCAATTTAATCTCGGGGCCATGCATGAAAACGG
CCAAGGTGTGCCGCGTGACAATGCCAAGGCCGAGATGTGGTATAAACTTG
CTGCCGGGCTGGGCCTTGCAGACGCCCAATTCACGCTCGGCGTCCGCTAT
GAGACGGGCCAAGGCGTGTTACAGAACACGGCGGAGGCCTTGAAGTGGTA
CCGCCTTGCCGCTGATCAGGGGTTTACCCAGGCCCAGTACAATCTTGGGG
TTATCTACGACAACGCCAGCGGCGTGCGGCGTGATTTGGCCGAGGCCGCC
AAATGGTATCTCGCGGCGTCAGAGAAGGGCTTGGCGGCGGCCCAGGCCAA
GCTCGGCCTCATGCACGAGACGGGGCGTGGTGTGCGGTTGGATTATGCCG
AAGCTGCCACGTGGTATCAACGCGCCGCCGATCAGGGTGATGCTTCGGCC
CAGGGCCATCTAGGGGCAATGTATGACAAGGGCAGGGGCGTCGCCCAGGA
CTTCGCCAAGGCCCTGAAGTGGTACCGGCTCGCCGCTGATCAGGGTGAT
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