mRNA_P-wetherbeei_contig18814.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18814.1.1
Unique NamemRNA_P-wetherbeei_contig18814.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18814.1.1 vs. uniprot
Match: A0A4D9DCX4_9STRA (BRCA-2_OB1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCX4_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.660e-20
Identity = 66/166 (39.76%), Postives = 87/166 (52.41%), Query Frame = 1 
Query:    1 LDDGLSFFARRGRIAIGSKLAVSGAVMDP---DGADPLKMLARRTRGLLPPGGGPCLRLTINGTRAALWNAKLGFQKRCATRSSGDDDGPGGIRGGSESAMVLPLCSLTPGGGTVPAVDVVVHRRYPRLFRECGFGSGGGSGRGTMRILTEGEEEALQMEHQGVCQ 489
            LD+ LS F R GRI +G+K+A+ GA++      G DPL+ML +           PCL+L INGTR A W+A LGFQ+R +  S G               M   +  L  GGG+ PA++ VV RRY   F E    + G   R   R+L+  EEE  Q  H+GVCQ
Sbjct:   88 LDNFLSAFVRTGRIRVGTKVAICGALLQGLSGGGIDPLEMLDQSA------DARPCLQLVINGTRPARWDAPLGFQRRPSVCSRG--------------VMSTSVSGLVAGGGSAPAIEAVVVRRYATQFMERRINAEGE--RLASRVLSVAEEEDAQQRHEGVCQ 231
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BLAST of mRNA_P-wetherbeei_contig18814.1.1 vs. uniprot
Match: K8Z4D8_NANGC (Breast cancer 2 susceptibility protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z4D8_NANGC)

HSP 1 Score: 97.4 bits (241), Expect = 2.110e-20
Identity = 66/166 (39.76%), Postives = 85/166 (51.20%), Query Frame = 1 
Query:    1 LDDGLSFFARRGRIAIGSKLAVSGAVMDP---DGADPLKMLARRTRGLLPPGGGPCLRLTINGTRAALWNAKLGFQKRCATRSSGDDDGPGGIRGGSESAMVLPLCSLTPGGGTVPAVDVVVHRRYPRLFRECGFGSGGGSGRGTMRILTEGEEEALQMEHQGVCQ 489
            LD  LS F R GRI +G+K+A+ GA +      G DPL+ML +           PCL+L INGTR A W+A LGFQ+R +  S G               M   +  L  GGG+ PA++ VV RRY   F E    + G   R   R+L+  EEE  Q  H+GVCQ
Sbjct:  155 LDSFLSAFVRTGRIRVGTKVAICGAFLQGLSGGGVDPLEMLDQSA------DARPCLQLVINGTRPARWDAPLGFQRRPSMCSRG--------------VMSTSVSGLVAGGGSAPAIEAVVVRRYATQFMERSLNAEGE--RLASRVLSVAEEEDAQQRHEGVCQ 298
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BLAST of mRNA_P-wetherbeei_contig18814.1.1 vs. uniprot
Match: W7U0L1_9STRA (DNA recombination/repair BRCA2 like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0L1_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.300e-20
Identity = 66/166 (39.76%), Postives = 85/166 (51.20%), Query Frame = 1 
Query:    1 LDDGLSFFARRGRIAIGSKLAVSGAVMDP---DGADPLKMLARRTRGLLPPGGGPCLRLTINGTRAALWNAKLGFQKRCATRSSGDDDGPGGIRGGSESAMVLPLCSLTPGGGTVPAVDVVVHRRYPRLFRECGFGSGGGSGRGTMRILTEGEEEALQMEHQGVCQ 489
            LD  LS F R GRI +G+K+A+ GA +      G DPL+ML +           PCL+L INGTR A W+A LGFQ+R +  S G               M   +  L  GGG+ PA++ VV RRY   F E    + G   R   R+L+  EEE  Q  H+GVCQ
Sbjct:  568 LDSFLSAFVRTGRIRVGTKVAICGAFLQGLSGGGVDPLEMLDQSA------DARPCLQLVINGTRPARWDAPLGFQRRPSMCSRG--------------VMSTSVSGLVAGGGSAPAIEAVVVRRYATQFMERSLNAEGE--RLASRVLSVAEEEDAQQRHEGVCQ 711
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BLAST of mRNA_P-wetherbeei_contig18814.1.1 vs. uniprot
Match: A0A1X7T0V7_AMPQE (Uncharacterized protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7T0V7_AMPQE)

HSP 1 Score: 70.5 bits (171), Expect = 4.910e-11
Identity = 53/157 (33.76%), Postives = 70/157 (44.59%), Query Frame = 1 
Query:    1 LDDGLSFFARRGRIAIGSKLAVSGAVMDPDGADPLKMLARRTRGLLPPGGGPCLRLTINGTRAALWNAKLGFQKRCATRSSGDDDGPGGIRGGSESAMVLPLCSLTPGGGTVPAVDVVVHRRYPRLFRECGFGSGGGSGRGTMRILTEGEEEALQME 471
            LD  LS FA RG I +G KLAV GA +  D  +   +   +++ LL         L  N  R A W+A+LG        S                    PL S+ P GG +PA++VV+ RRYP L+ E GF  G G G          EEE ++ E
Sbjct:  269 LDRPLSSFAARGLICVGGKLAVFGAELSGDQTNGHPLEVSKSKLLL---------LNANSVRRAHWSARLGLLPHPVPPS-------------------FPLQSIIPAGGIIPAIEVVIARRYPLLYVERGFSDGDGRGFNGRVFRRRHEEERVERE 397
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BLAST of mRNA_P-wetherbeei_contig18814.1.1 vs. uniprot
Match: A0A0D2UGS7_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UGS7_CAPO3)

HSP 1 Score: 67.0 bits (162), Expect = 9.010e-10
Identity = 49/131 (37.40%), Postives = 64/131 (48.85%), Query Frame = 1 
Query:    1 LDDGLSFFARRGRIAIGSKLAVSGA--VMDPDGADPLKMLARRTRGLLPPGGGPCLRLTINGTRAALWNAKLGFQKRCATRSSGDDDGPGGIRGGSESAMVLPLCSLTPGGGTVPAVDVVVHRRYPRLFRE 387
            LD  L+   +RG+IA+G+KLA++ A  V   DGA PL+  A +T           LRLT N TR A W A LG+Q R                          L + +P GG + AVDVVV R+YP +F E
Sbjct: 1195 LDRDLAALVQRGKIAVGTKLAIASAELVGPGDGAGPLEPGAAKTS----------LRLTANATRRARWWASLGYQGR--------------------PPFFTALSTASPTGGAIAAVDVVVLRQYPAVFIE 1295
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BLAST of mRNA_P-wetherbeei_contig18814.1.1 vs. uniprot
Match: B5YME7_THAPS (Breast cancer 2 early onset (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YME7_THAPS)

HSP 1 Score: 65.1 bits (157), Expect = 2.570e-9
Identity = 61/172 (35.47%), Postives = 84/172 (48.84%), Query Frame = 1 
Query:    1 LDDGLSFFARRGRIAIGSKLAVSGA--VMDPDGADPLK---MLARRTRGLLPPGGGPCLRLTINGTRAALWNAKLGFQKRCATRSSGDDDGPGGIRGGSESAMVLPLCSLTPGGGTVPAVDVVVHRRYPRLFRECGFGSGGGSGRGTMRILTEGEEEALQMEHQGVCQRAAE 501
            +D+ L  F    RIA+GSKL +     V   DG +PL      ++R   LL       L ++ N +R A W+A LGF  R  +           + GG+   +V  L  +  GGGTVPA+D+VV ++YPR+F E   G       G    LTE EE A Q E+    QRA+E
Sbjct:  120 VDEILLKFVEERRIAVGSKLMICNGQLVGSDDGVEPLDDSYSSSKRDCPLL-------LGISANNSRLARWDATLGFVPRNNSN----------LYGGN--LLVKSLQDIFIGGGTVPAIDLVVCKKYPRMFLEQLNG-------GASIHLTEAEEAARQSEYDSRHQRASE 265
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BLAST of mRNA_P-wetherbeei_contig18814.1.1 vs. uniprot
Match: G0SX58_RHOT2 (Rad51-associated protein Brh2 n=2 Tax=Rhodosporidium toruloides TaxID=5286 RepID=G0SX58_RHOT2)

HSP 1 Score: 64.3 bits (155), Expect = 7.430e-9
Identity = 46/139 (33.09%), Postives = 63/139 (45.32%), Query Frame = 1 
Query:    1 LDDGLSFFARRGRIAIGSKLAVSGAVMD---PDGADPLKMLARRTRGLLPPGGGPCLRLTINGTRAALWNAKLGFQKRCATRSSGDDDGPGGIRGGSESAMVLPLCSLTPGGGTVPAVDVVVHRRYPRLFRECGFGSGG 408
            +D  L     RG+I +GSK+AV GA +D    +G+D L+ L R T           L +T N T  A W+AKLGF+                         V  L S++P GG VP +D+ V R +PR + E   G  G
Sbjct:  833 VDRTLKSACERGKIVVGSKIAVMGAKLDCSKDEGSDVLQALGRST-----------LMITGNSTSLAPWHAKLGFRPE---------------------PFVASLASISPAGGLVPLLDIYVDRAFPRGYTELRKGRSG 939
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BLAST of mRNA_P-wetherbeei_contig18814.1.1 vs. uniprot
Match: UPI0004624672 (uncharacterized protein n=1 Tax=Trametes versicolor (strain FP-101664) TaxID=717944 RepID=UPI0004624672)

HSP 1 Score: 63.9 bits (154), Expect = 1.000e-8
Identity = 43/120 (35.83%), Postives = 57/120 (47.50%), Query Frame = 1 
Query:   28 RRGRIAIGSKLAVSGAVMDPDGADPLKMLARRTRGLLPPGGGPCLRLTINGTRAALWNAKLGFQKRCATRSSGDDDGPGGIRGGSESAMVLPLCSLTPGGGTVPAVDVVVHRRYPRLFRE 387
            RRGRI IGSKLA+SGA +     +P ++L      +L         LT N T  A W+AKLGF K+                       +  L  LTP GG VPA+D+++ + YP  F E
Sbjct:  723 RRGRICIGSKLAISGAKLSGGRKEPCEILDAYDNTML--------ELTGNCTNLAPWHAKLGFVKQ---------------------PFIATLDKLTPDGGNVPAMDLIITKTYPIAFLE 813
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BLAST of mRNA_P-wetherbeei_contig18814.1.1 vs. uniprot
Match: A0A1M2W3F7_TRAPU (Breast cancer type 2 susceptibility protein-like protein n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2W3F7_TRAPU)

HSP 1 Score: 63.5 bits (153), Expect = 1.420e-8
Identity = 43/120 (35.83%), Postives = 56/120 (46.67%), Query Frame = 1 
Query:   28 RRGRIAIGSKLAVSGAVMDPDGADPLKMLARRTRGLLPPGGGPCLRLTINGTRAALWNAKLGFQKRCATRSSGDDDGPGGIRGGSESAMVLPLCSLTPGGGTVPAVDVVVHRRYPRLFRE 387
            RRGRI IGSKLA+SGA +     +P ++L      +L         LT N T  A W+AKLGF K                        +  L  LTP GG VPA+D+++ + YP  F E
Sbjct:  958 RRGRICIGSKLAISGAKLSGGRKEPCEILEAYDNTML--------ELTGNCTNLAPWHAKLGFVKH---------------------PFIATLDKLTPDGGMVPAMDLIITKTYPIAFLE 1048
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BLAST of mRNA_P-wetherbeei_contig18814.1.1 vs. uniprot
Match: A0A7S2Q3B5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q3B5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.830e-8
Identity = 56/161 (34.78%), Postives = 78/161 (48.45%), Query Frame = 1 
Query:   37 RIAIGSKLAVSGAVMD--PDGADPLK---MLARRTRGLLPPGGGPCLRLTINGTRAALWNAKLGF-QKRCATRSSGDDDGPGGIRGGSESAMVLPLCSLTPGGGTVPAVDVVVHRRYPRLFRECGFGSGGGSGRGTMRILTEGEEEALQMEHQGVCQRAAE 501
            +I +GSKL +  A +    +G DPL       +RT  L        L++T N TR A W+AKLGF   +C           GGI        +  L  + PGGG +P++D+V+ +RYP++F E      G     T   LTEGEE + Q E+    QRA E
Sbjct:  400 KIRVGSKLLICNAQISGSDEGVDPLDESYSSEKRTCPLF-------LKITTNNTRLAKWDAKLGFVSPKC-----------GGI-------TIKALRDIYPGGGNIPSIDLVICKRYPKMFLEQMIT--GEHQIPTTTHLTEGEEASRQSEYDLKIQRAGE 533
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18814.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4D9DCX4_9STRA1.660e-2039.76BRCA-2_OB1 domain-containing protein n=1 Tax=Nanno... [more]
K8Z4D8_NANGC2.110e-2039.76Breast cancer 2 susceptibility protein n=1 Tax=Nan... [more]
W7U0L1_9STRA2.300e-2039.76DNA recombination/repair BRCA2 like protein n=1 Ta... [more]
A0A1X7T0V7_AMPQE4.910e-1133.76Uncharacterized protein n=2 Tax=Amphimedon queensl... [more]
A0A0D2UGS7_CAPO39.010e-1037.40Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
B5YME7_THAPS2.570e-935.47Breast cancer 2 early onset (Fragment) n=1 Tax=Tha... [more]
G0SX58_RHOT27.430e-933.09Rad51-associated protein Brh2 n=2 Tax=Rhodosporidi... [more]
UPI00046246721.000e-835.83uncharacterized protein n=1 Tax=Trametes versicolo... [more]
A0A1M2W3F7_TRAPU1.420e-835.83Breast cancer type 2 susceptibility protein-like p... [more]
A0A7S2Q3B5_9STRA1.830e-834.78Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18814contigP-wetherbeei_contig18814:626..1321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LCN1
Preferred nameBRCA2
PFAMsBRCA-2_OB1,BRCA-2_OB3,BRCA-2_helical,BRCA2,Tower
Model size516
Max annot lvl2759|Eukaryota
KEGG koko:K06236,ko:K08775
KEGG Pathwayko03440,ko03460,ko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,ko05200,ko05212,ko05224,map03440,map03460,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165,map05200,map05212,map05224
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000281,GO:0000711,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000781,GO:0000784,GO:0000793,GO:0000794,GO:0000795,GO:0000800,GO:0000910,GO:0001556,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0002020,GO:0002376,GO:0002520,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0004402,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006312,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006978,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007098,GO:0007127,GO:0007131,GO:0007140,GO:0007141,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0007568,GO:0007569,GO:0007584,GO:0008022,GO:0008080,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008219,GO:0008283,GO:0008285,GO:0008406,GO:0008585,GO:0008608,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0009994,GO:0010033,GO:0010165,GO:0010212,GO:0010225,GO:0010243,GO:0010332,GO:0010468,GO:0010484,GO:0010485,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010639,GO:0010778,GO:0010948,GO:0012501,GO:0012505,GO:0014070,GO:0015630,GO:0015631,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0023052,GO:0030097,GO:0030141,GO:0030154,GO:0030330,GO:0030879,GO:0031023,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031410,GO:0031619,GO:0031667,GO:0031974,GO:0031981,GO:0031982,GO:0032200,GO:0032355,GO:0032465,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033043,GO:0033260,GO:0033313,GO:0033365,GO:0033554,GO:0033593,GO:0033599,GO:0033600,GO:0033993,GO:0034212,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035264,GO:0035556,GO:0035825,GO:0036211,GO:0040007,GO:0040020,GO:0042127,GO:0042221,GO:0042493,GO:0042592,GO:0042770,GO:0042771,GO:0042772,GO:0042802,GO:0043009,GO:0043015,GO:0043060,GO:0043150,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0043412,GO:0043543,GO:0043966,GO:0043967,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044786,GO:0045005,GO:0045132,GO:0045137,GO:0045143,GO:0045184,GO:0045786,GO:0045787,GO:0045835,GO:0045893,GO:0045931,GO:0045934,GO:0045935,GO:0046483,GO:0046545,GO:0046660,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048477,GO:0048478,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048589,GO:0048599,GO:0048608,GO:0048609,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050000,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051276,GO:0051298,GO:0051301,GO:0051302,GO:0051303,GO:0051310,GO:0051311,GO:0051316,GO:0051321,GO:0051445,GO:0051447,GO:0051455,GO:0051598,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0060255,GO:0060322,GO:0061458,GO:0061640,GO:0061733,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0070198,GO:0070199,GO:0070200,GO:0070727,GO:0071695,GO:0071704,GO:0071840,GO:0071897,GO:0072331,GO:0072332,GO:0072594,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0097190,GO:0097193,GO:0097305,GO:0097327,GO:0097708,GO:0098687,GO:0098813,GO:0099086,GO:0099503,GO:0140013,GO:1901360,GO:1901362,GO:1901363,GO:1901563,GO:1901564,GO:1901576,GO:1901698,GO:1901700,GO:1902298,GO:1902680,GO:1902969,GO:1903046,GO:1903047,GO:1903506,GO:1903508,GO:1990426,GO:1990505,GO:2000026,GO:2000104,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2001141
Exons3
Evalue3.27e-15
EggNOG OGsKOG4751@1|root,KOG4751@2759|Eukaryota
Descriptionhomologous chromosome orientation involved in meiotic metaphase I plate congression
Cds size516
COG categoryS
BRITEko00000,ko00001,ko00536,ko03036,ko03400,ko04121,ko04516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186155.9482665-CDS-P-wetherbeei_contig18814:625..7521683186155.9482665-CDS-P-wetherbeei_contig18814:625..752Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18814 626..752 -
1683186155.9613729-CDS-P-wetherbeei_contig18814:818..11201683186155.9613729-CDS-P-wetherbeei_contig18814:818..1120Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18814 819..1120 -
1683186155.9705184-CDS-P-wetherbeei_contig18814:1234..13211683186155.9705184-CDS-P-wetherbeei_contig18814:1234..1321Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18814 1235..1321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18814.1.1prot_P-wetherbeei_contig18814.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18814 626..1321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18814.1.1

>prot_P-wetherbeei_contig18814.1.1 ID=prot_P-wetherbeei_contig18814.1.1|Name=mRNA_P-wetherbeei_contig18814.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=172bp
LDDGLSFFARRGRIAIGSKLAVSGAVMDPDGADPLKMLARRTRGLLPPGG
GPCLRLTINGTRAALWNAKLGFQKRCATRSSGDDDGPGGIRGGSESAMVL
PLCSLTPGGGTVPAVDVVVHRRYPRLFRECGFGSGGGSGRGTMRILTEGE
EEALQMEHQGVCQRAAEEAAAE
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mRNA from alignment at P-wetherbeei_contig18814:626..1321-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18814.1.1 ID=mRNA_P-wetherbeei_contig18814.1.1|Name=mRNA_P-wetherbeei_contig18814.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=696bp|location=Sequence derived from alignment at P-wetherbeei_contig18814:626..1321- (Phaeothamnion wetherbeei SAG_119_79)
CTGGACGACGGCCTCAGCTTCTTTGCGCGGCGGGGCCGCATCGCCATCGG
CTCCAAGCTGGCCGTCTCAGGTGCCGTCATGGACCCCGTCGGCTGGACTG
GCGACGGCGGCGGCACCGGCGGGGAAGAGGAGGCTCGGCGGCAGTGGAGT
CGGATGTTCAGCGGCGGCAACGGTGGCAACAGCGGCGGCAGTGGCTGTCA
GGACGGTGCAGACCCGCTGAAGATGCTGGCACGGCGGACCCGCGGCCTGC
TGCCGCCCGGCGGGGGGCCGTGCCTGCGGCTGACCATCAACGGCACCCGC
GCGGCGCTGTGGAACGCCAAGCTCGGCTTTCAAAAACGGTGCGCTACCCG
CAGCAGTGGCGACGACGACGGTCCTGGCGGCATTCGTGGTGGCAGCGAAT
CGGCAATGGTGCTGCCGTTGTGCAGCCTCACGCCGGGCGGCGGGACAGTG
CCGGCCGTCGACGTCGTTGTGCACCGACGCTACCCGCGGCTCTTCCGGGA
ATGGTGTGATTCGCCCGGCAGTGGCGGCGGCGGAAACAACGGTGACCATG
GCGGCGACAACAATGACAGTGGCTTTGGCAGTGGCGGCGGCAGCGGCAGG
GGAACGATGCGCATACTGACGGAGGGCGAGGAGGAGGCGCTGCAAATGGA
GCACCAGGGGGTGTGCCAGCGGGCGGCGGAGGAGGCGGCTGCCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18814:626..1321-

>mRNA_P-wetherbeei_contig18814.1.1 ID=mRNA_P-wetherbeei_contig18814.1.1|Name=mRNA_P-wetherbeei_contig18814.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig18814:626..1321- (Phaeothamnion wetherbeei SAG_119_79)
CTGGACGACGGCCTCAGCTTCTTTGCGCGGCGGGGCCGCATCGCCATCGG
CTCCAAGCTGGCCGTCTCAGGTGCCGTCATGGACCCCGACGGTGCAGACC
CGCTGAAGATGCTGGCACGGCGGACCCGCGGCCTGCTGCCGCCCGGCGGG
GGGCCGTGCCTGCGGCTGACCATCAACGGCACCCGCGCGGCGCTGTGGAA
CGCCAAGCTCGGCTTTCAAAAACGGTGCGCTACCCGCAGCAGTGGCGACG
ACGACGGTCCTGGCGGCATTCGTGGTGGCAGCGAATCGGCAATGGTGCTG
CCGTTGTGCAGCCTCACGCCGGGCGGCGGGACAGTGCCGGCCGTCGACGT
CGTTGTGCACCGACGCTACCCGCGGCTCTTCCGGGAATGTGGCTTTGGCA
GTGGCGGCGGCAGCGGCAGGGGAACGATGCGCATACTGACGGAGGGCGAG
GAGGAGGCGCTGCAAATGGAGCACCAGGGGGTGTGCCAGCGGGCGGCGGA
GGAGGCGGCTGCCGAG
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