mRNA_P-wetherbeei_contig18792.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18792.1.1
Unique NamemRNA_P-wetherbeei_contig18792.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18792.1.1 vs. uniprot
Match: UPI001AC9C5D6 (Uncharacterized protein n=1 Tax=Thermoflexales bacterium TaxID=2497639 RepID=UPI001AC9C5D6)

HSP 1 Score: 60.8 bits (146), Expect = 5.230e-8
Identity = 43/170 (25.29%), Postives = 73/170 (42.94%), Query Frame = 1 
Query:    1 RVAVHKQGLSVRTRAGTQSFGWSDVVSLREALTERTIKGAPAHMVREYNLDLSDGSKVTIPFGLENVAAVGEALRDQILPVIGRKAAAAIERGQSVKFDDWTVSAKSLRSSAGGELLWKQAGEAKVEKGQLRVTKRDGSLWQEK---SYADFPNAPVFLGIFESLRNNRG 501
            R+ V   GL           GW ++  +R+A+TE    G   + +  Y ++L  G        +ENVA +GE LR Q+      +A   ++RG++V F    VS + L +     + W +    ++  G + V K+   L+        A+ PN  VFL +       +G
Sbjct:   91 RIQVFNIGLVQVNGPDWTFIGWDEITVVRQAITEVRTYGIKVNTLYIYTIELKTGRTFKFDNHIENVATLGELLRQQVTRQQLPQALTKMQRGETVAFGALGVSQRGL-TYEDKAIAWSEVDRVEMLNGSVVVRKKTDRLFSLPLVIKAAEIPNLSVFLALIRQPDTRQG 259
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18792.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001AC9C5D65.230e-825.29Uncharacterized protein n=1 Tax=Thermoflexales bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18792contigP-wetherbeei_contig18792:805..1308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size504
Hectar predicted targeting categoryother localisation
Exons1
Cds size504
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186155.4311566-CDS-P-wetherbeei_contig18792:804..13081683186155.4311566-CDS-P-wetherbeei_contig18792:804..1308Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18792 805..1308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18792.1.1prot_P-wetherbeei_contig18792.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18792 805..1308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18792.1.1

>prot_P-wetherbeei_contig18792.1.1 ID=prot_P-wetherbeei_contig18792.1.1|Name=mRNA_P-wetherbeei_contig18792.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
RVAVHKQGLSVRTRAGTQSFGWSDVVSLREALTERTIKGAPAHMVREYNL
DLSDGSKVTIPFGLENVAAVGEALRDQILPVIGRKAAAAIERGQSVKFDD
WTVSAKSLRSSAGGELLWKQAGEAKVEKGQLRVTKRDGSLWQEKSYADFP
NAPVFLGIFESLRNNRGA
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mRNA from alignment at P-wetherbeei_contig18792:805..1308-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18792.1.1 ID=mRNA_P-wetherbeei_contig18792.1.1|Name=mRNA_P-wetherbeei_contig18792.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig18792:805..1308- (Phaeothamnion wetherbeei SAG_119_79)
CGGGTCGCCGTTCACAAACAGGGGCTGAGCGTGCGCACCCGCGCTGGAAC
GCAGAGTTTTGGCTGGTCTGACGTGGTGAGTCTGCGTGAGGCTTTGACCG
AGCGCACGATCAAGGGAGCTCCCGCTCACATGGTGCGTGAGTACAACCTC
GACCTGAGTGACGGCAGCAAAGTTACCATCCCCTTTGGCCTGGAGAATGT
AGCGGCCGTTGGTGAGGCGCTGCGCGACCAGATCTTGCCCGTCATCGGCC
GCAAAGCAGCGGCTGCCATCGAGCGCGGGCAGTCGGTCAAGTTCGATGAC
TGGACGGTCAGCGCGAAGAGCCTCCGCTCCAGTGCGGGCGGAGAACTGCT
GTGGAAGCAGGCGGGCGAGGCCAAGGTGGAAAAGGGGCAGCTGCGCGTCA
CGAAACGCGACGGAAGTCTCTGGCAAGAGAAGAGCTACGCCGACTTCCCC
AACGCCCCGGTTTTCCTCGGTATTTTTGAGAGCCTGCGCAATAACCGCGG
GGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18792:805..1308-

>mRNA_P-wetherbeei_contig18792.1.1 ID=mRNA_P-wetherbeei_contig18792.1.1|Name=mRNA_P-wetherbeei_contig18792.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig18792:805..1308- (Phaeothamnion wetherbeei SAG_119_79)
CGGGTCGCCGTTCACAAACAGGGGCTGAGCGTGCGCACCCGCGCTGGAAC
GCAGAGTTTTGGCTGGTCTGACGTGGTGAGTCTGCGTGAGGCTTTGACCG
AGCGCACGATCAAGGGAGCTCCCGCTCACATGGTGCGTGAGTACAACCTC
GACCTGAGTGACGGCAGCAAAGTTACCATCCCCTTTGGCCTGGAGAATGT
AGCGGCCGTTGGTGAGGCGCTGCGCGACCAGATCTTGCCCGTCATCGGCC
GCAAAGCAGCGGCTGCCATCGAGCGCGGGCAGTCGGTCAAGTTCGATGAC
TGGACGGTCAGCGCGAAGAGCCTCCGCTCCAGTGCGGGCGGAGAACTGCT
GTGGAAGCAGGCGGGCGAGGCCAAGGTGGAAAAGGGGCAGCTGCGCGTCA
CGAAACGCGACGGAAGTCTCTGGCAAGAGAAGAGCTACGCCGACTTCCCC
AACGCCCCGGTTTTCCTCGGTATTTTTGAGAGCCTGCGCAATAACCGCGG
GGCA
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