mRNA_P-wetherbeei_contig1876.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1876.1.1
Unique NamemRNA_P-wetherbeei_contig1876.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1876.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1876contigP-wetherbeei_contig1876:1524..2429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size906
Hectar predicted targeting categoryother localisation
Exons1
Cds size723
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186154.8849044-CDS-P-wetherbeei_contig1876:1523..22461683186154.8849044-CDS-P-wetherbeei_contig1876:1523..2246Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1876 1524..2246 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186154.896982-UTR-P-wetherbeei_contig1876:2246..24291683186154.896982-UTR-P-wetherbeei_contig1876:2246..2429Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1876 2247..2429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1876.1.1prot_P-wetherbeei_contig1876.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1876 1524..2246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1876.1.1

>prot_P-wetherbeei_contig1876.1.1 ID=prot_P-wetherbeei_contig1876.1.1|Name=mRNA_P-wetherbeei_contig1876.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=241bp
MSQARPATLDEMSTHSVKLASVKRRRLIFLLDKLARDELRGSPAITAWVK
TQPRRVLALDYLGGEHSAWWDRMEDAGNLDSATPMARGKTKELLQNALKQ
LNASTGHVLIVAAESTLTDTARIINLLASAITLFEAIYIVAPNLDNLVTD
ACLQQLRLEFPWPQIHGKSPRPVPLCARMCRIFCRTTFRGVGHSTELEQY
RLGGVWLPQGKVPGKTHPDCDLATVKRIDIAPEPPAELVQE
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mRNA from alignment at P-wetherbeei_contig1876:1524..2429-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1876.1.1 ID=mRNA_P-wetherbeei_contig1876.1.1|Name=mRNA_P-wetherbeei_contig1876.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=906bp|location=Sequence derived from alignment at P-wetherbeei_contig1876:1524..2429- (Phaeothamnion wetherbeei SAG_119_79)
CCTGCAGCAAGGAACATGCCAGTGTCGGTGGCGCTAACACGTGGTACAAG
GCAACGACAAGTTCGCGCAGGGTTAGTACCCGGTGCGCCTTCCTCGTCTC
AACATCATCGCTGATGTCTTGCGACGGAGCGAACAACTTCCGCGCGCGTC
GCTCTGGCGTCATTCAATTCATCCTGTCAAAAAATGTCGCAAGCACGGCC
GGCCACGTTGGACGAGATGTCTACACATTCGGTGAAATTGGCGAGCGTCA
AGCGGCGCCGGTTAATTTTCCTCCTGGACAAACTAGCTCGGGACGAACTT
CGAGGTTCTCCAGCGATAACCGCGTGGGTCAAGACGCAGCCGCGACGCGT
CCTGGCGCTGGATTATCTTGGCGGTGAGCACTCGGCCTGGTGGGATCGCA
TGGAGGACGCGGGCAATTTGGACAGCGCCACACCAATGGCTCGTGGTAAA
ACTAAGGAGCTCCTACAAAATGCGCTCAAGCAGCTGAATGCGTCTACCGG
GCACGTCCTCATCGTCGCGGCGGAATCAACGCTTACTGATACGGCGCGCA
TCATCAACTTGCTGGCGTCGGCCATTACACTGTTTGAGGCCATCTACATT
GTGGCACCAAATTTGGACAACCTCGTCACCGACGCTTGCTTGCAACAGCT
TCGCCTGGAATTTCCGTGGCCACAGATCCACGGTAAGTCTCCACGACCCG
TTCCGTTGTGCGCGCGCATGTGCCGTATCTTCTGTCGGACGACTTTTCGG
GGGGTGGGCCATTCCACGGAGTTGGAGCAATATCGGCTAGGCGGCGTGTG
GCTCCCACAAGGAAAAGTGCCGGGGAAAACGCACCCTGACTGCGACCTGG
CGACCGTGAAGCGAATAGACATTGCGCCGGAACCGCCTGCGGAGTTAGTA
CAGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1876:1524..2429-

>mRNA_P-wetherbeei_contig1876.1.1 ID=mRNA_P-wetherbeei_contig1876.1.1|Name=mRNA_P-wetherbeei_contig1876.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=723bp|location=Sequence derived from alignment at P-wetherbeei_contig1876:1524..2429- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGCAAGCACGGCCGGCCACGTTGGACGAGATGTCTACACATTCGGT
GAAATTGGCGAGCGTCAAGCGGCGCCGGTTAATTTTCCTCCTGGACAAAC
TAGCTCGGGACGAACTTCGAGGTTCTCCAGCGATAACCGCGTGGGTCAAG
ACGCAGCCGCGACGCGTCCTGGCGCTGGATTATCTTGGCGGTGAGCACTC
GGCCTGGTGGGATCGCATGGAGGACGCGGGCAATTTGGACAGCGCCACAC
CAATGGCTCGTGGTAAAACTAAGGAGCTCCTACAAAATGCGCTCAAGCAG
CTGAATGCGTCTACCGGGCACGTCCTCATCGTCGCGGCGGAATCAACGCT
TACTGATACGGCGCGCATCATCAACTTGCTGGCGTCGGCCATTACACTGT
TTGAGGCCATCTACATTGTGGCACCAAATTTGGACAACCTCGTCACCGAC
GCTTGCTTGCAACAGCTTCGCCTGGAATTTCCGTGGCCACAGATCCACGG
TAAGTCTCCACGACCCGTTCCGTTGTGCGCGCGCATGTGCCGTATCTTCT
GTCGGACGACTTTTCGGGGGGTGGGCCATTCCACGGAGTTGGAGCAATAT
CGGCTAGGCGGCGTGTGGCTCCCACAAGGAAAAGTGCCGGGGAAAACGCA
CCCTGACTGCGACCTGGCGACCGTGAAGCGAATAGACATTGCGCCGGAAC
CGCCTGCGGAGTTAGTACAGGAG
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