mRNA_P-wetherbeei_contig18757.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18757.1.1
Unique NamemRNA_P-wetherbeei_contig18757.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18757.1.1 vs. uniprot
Match: A0A6H5KU27_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KU27_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.980e-27
Identity = 65/122 (53.28%), Postives = 84/122 (68.85%), Query Frame = 1 
Query:   49 TLAGKGGGDL-GLRRRPAGRDGDPAEASAAVAAAERRRSWQVRQDLELQQHSGRRVDEAHAVERMVNELGQMFGRFSQLVAQQEELVVHIEDDFSSAHVFASEGQANLARYYQIIKGNRGLV 411
            T A +GGG   GLR+RP   DG  AE  +      RR +WQV    ++Q+ S  RVDE+H VE+M+ +LG MF RFS +VA QEE+V+HIEDD  +AH FA EGQA+LA+YYQI  GNRG++
Sbjct:  358 TEASRGGGRATGLRKRPGREDGGDAEEES------RRAAWQV----QVQEDSKTRVDESHKVEKMIGDLGHMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQITSGNRGII 469
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BLAST of mRNA_P-wetherbeei_contig18757.1.1 vs. uniprot
Match: F0Y6L6_AURAN (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6L6_AURAN)

HSP 1 Score: 63.2 bits (152), Expect = 1.910e-10
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:  187 LQQHSGRRVDEAHAVERMVNELGQMFGRFSQLVAQQEELVVHIEDDFSSAHVFASEGQANLARYYQIIKGNRGL 408
            L+Q S RR+D AH +E+ + +LG++F RFS LVAQQ E+V  ++DD   A      G A L +  ++++GNR L
Sbjct:    2 LEQTSRRRLDTAHNIEKEIGKLGEVFSRFSSLVAQQAEVVERLDDDVEGALGEVEMGHAELLKAQEVLRGNRAL 75
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BLAST of mRNA_P-wetherbeei_contig18757.1.1 vs. uniprot
Match: A0A7S1UQV8_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UQV8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 4.360e-9
Identity = 32/79 (40.51%), Postives = 51/79 (64.56%), Query Frame = 1 
Query:  175 QDLELQQHSGRRVDEAHAVERMVNELGQMFGRFSQLVAQQEELVVHIEDDFSSAHVFASEGQANLARYYQIIKGNRGLV 411
            Q  ++Q+ +  R+D A   E  ++ELG +FG+ SQL++QQ E++  +EDD  +A V  + GQ  +   YQ+ KGNRGL+
Sbjct:  354 QQRQIQRQTQNRLDSARQAESTLHELGTVFGKMSQLISQQGEVLEKVEDDVEAAMVDVTAGQNEIQILYQMKKGNRGLI 432
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BLAST of mRNA_P-wetherbeei_contig18757.1.1 vs. uniprot
Match: A0A7S4GJA1_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GJA1_9EUGL)

HSP 1 Score: 57.4 bits (137), Expect = 5.250e-7
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:  190 QQHSGRRVDEAHAVERMVNELGQMFGRFSQLVAQQEELVVHIEDDFSSAHVFASEGQANLARYYQIIKGNRGLV 411
            QQ+   R D    +E  +NEL  MF  F+++VA+Q+EL++ I+DD  +A V    GQ  L RY   I  NR L+
Sbjct:  222 QQYFNARNDAVRQIESTINELSGMFQEFARIVAEQDELIMRIDDDVETALVNVERGQNELIRYLNRISSNRNLI 295
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BLAST of mRNA_P-wetherbeei_contig18757.1.1 vs. uniprot
Match: A0A0S4TB32_CRYHO (t-SNARE coiled-coil homology domain-containing protein n=5 Tax=Cryptosporidium TaxID=5806 RepID=A0A0S4TB32_CRYHO)

HSP 1 Score: 57.0 bits (136), Expect = 7.370e-7
Identity = 26/68 (38.24%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:  208 RVDEAHAVERMVNELGQMFGRFSQLVAQQEELVVHIEDDFSSAHVFASEGQANLARYYQIIKGNRGLV 411
            R +    V+RM+ EL Q+F + + +V QQEE++  I++D S+       G A L +YY  +K NRGL+
Sbjct:  239 RAEAVENVQRMIGELAQIFQKVAGMVTQQEEMIQRIDEDISNTFSNVEHGHAELIKYYNYVKSNRGLI 306
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18757.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KU27_9PHAE1.980e-2753.28t-SNARE coiled-coil homology domain-containing pro... [more]
F0Y6L6_AURAN1.910e-1043.24t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S1UQV8_9STRA4.360e-940.51Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4GJA1_9EUGL5.250e-740.54Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A0S4TB32_CRYHO7.370e-738.24t-SNARE coiled-coil homology domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18757contigP-wetherbeei_contig18757:33..1328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LR19
Preferred nameSTX5
PFAMsSNARE,Syntaxin-5_N
Model size411
Max annot lvl2759|Eukaryota
KEGG koko:K08490
KEGG Pathwayko04130,map04130
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000149,GO:0000278,GO:0000280,GO:0000281,GO:0000902,GO:0000910,GO:0001505,GO:0002164,GO:0002376,GO:0002520,GO:0002790,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0005886,GO:0006810,GO:0006836,GO:0006873,GO:0006875,GO:0006878,GO:0006886,GO:0006887,GO:0006888,GO:0006891,GO:0006900,GO:0006901,GO:0006903,GO:0006904,GO:0006906,GO:0006996,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0008104,GO:0008150,GO:0008283,GO:0008361,GO:0009306,GO:0009653,GO:0009791,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010256,GO:0010604,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0016197,GO:0016482,GO:0017156,GO:0019222,GO:0019725,GO:0019953,GO:0022402,GO:0022406,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0023061,GO:0030003,GO:0030097,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031201,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0033043,GO:0033116,GO:0033206,GO:0034498,GO:0034613,GO:0035166,GO:0035167,GO:0042147,GO:0042175,GO:0042176,GO:0042592,GO:0042802,GO:0042803,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045055,GO:0045184,GO:0045732,GO:0045786,GO:0045930,GO:0046903,GO:0046907,GO:0046916,GO:0046983,GO:0047485,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048278,GO:0048280,GO:0048284,GO:0048285,GO:0048308,GO:0048313,GO:0048489,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048534,GO:0048542,GO:0048569,GO:0048609,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0051128,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051301,GO:0051321,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051726,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0060255,GO:0060305,GO:0061024,GO:0061025,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0090114,GO:0090166,GO:0090174,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098771,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140013,GO:0140029,GO:0140056,GO:1903008,GO:1903046,GO:1903047,GO:1903358
Exons4
Evalue4.77e-31
EggNOG OGsKOG0812@1|root,KOG0812@2759|Eukaryota
Descriptionvesicle docking
Cds size411
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186154.805554-CDS-P-wetherbeei_contig18757:32..1291683186154.805554-CDS-P-wetherbeei_contig18757:32..129Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18757 33..129 +
1683186154.8148863-CDS-P-wetherbeei_contig18757:445..6721683186154.8148863-CDS-P-wetherbeei_contig18757:445..672Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18757 446..672 +
1683186154.8223548-CDS-P-wetherbeei_contig18757:734..7441683186154.8223548-CDS-P-wetherbeei_contig18757:734..744Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18757 735..744 +
1683186154.829733-CDS-P-wetherbeei_contig18757:1251..13281683186154.829733-CDS-P-wetherbeei_contig18757:1251..1328Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18757 1252..1328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18757.1.1prot_P-wetherbeei_contig18757.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18757 33..1328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18757.1.1

>prot_P-wetherbeei_contig18757.1.1 ID=prot_P-wetherbeei_contig18757.1.1|Name=mRNA_P-wetherbeei_contig18757.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
ASPPPGWPGPQAPAAPTLAGKGGGDLGLRRRPAGRDGDPAEASAAVAAAE
RRRSWQVRQDLELQQHSGRRVDEAHAVERMVNELGQMFGRFSQLVAQQEE
LVVHIEDDFSSAHVFASEGQANLARYYQIIKGNRGLV
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mRNA from alignment at P-wetherbeei_contig18757:33..1328+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18757.1.1 ID=mRNA_P-wetherbeei_contig18757.1.1|Name=mRNA_P-wetherbeei_contig18757.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1296bp|location=Sequence derived from alignment at P-wetherbeei_contig18757:33..1328+ (Phaeothamnion wetherbeei SAG_119_79)
GCGTCGCCGCCGCCCGGATGGCCGGGACCGCAAGCGCCGGCCGCGCCGAC
GTTGGCCGGTAAAGGGGGCGGCGACTTAGGCCTCCGAAGACGGCCAGGTG
AGAACGAAAGGTGGAAGGAGAGAGATTTTCTTCTTTTATCCCACGATGAA
CTTTGCAGTCTCTTTTGTGCCAGTCCTTTCTCGATTGGCATCTCGTTCAA
CGACTCTCGTCGATGTCTCAGCGCTGCGCTTTTCGGAAGGGCGCCCCTTT
TCGCCTGGCCTGGGATGTCCCTTTGACGCTCCCATTCCCCTCCCCTCCAC
TCTATGCCGCTCTCCGCTGTAATATCAATTTCACCAAAGAAAATGCGTCC
AATGTCAACGTCATAAAACTAGTTCCCATTCCGGCCCCCCATTTTCGCGT
CTTAATAAATAAGCAGGGCGCGACGGCGACCCGGCGGAGGCCTCGGCGGC
GGTGGCGGCGGCGGAGCGGCGGCGTAGCTGGCAGGTGCGGCAAGACCTCG
AGCTGCAGCAGCATTCCGGGCGGCGCGTCGACGAGGCGCACGCTGTGGAG
CGCATGGTGAACGAGCTAGGCCAGATGTTCGGGCGCTTCTCGCAGCTCGT
GGCGCAGCAGGAGGAGCTCGTCGTGCACATCGAGGACGACGTCGAGATGG
GCGAGCCAGCCGGATTTTTTTCCTTTTTGGAGGCGGGAAATGAAGGCGTC
AGTTTTCTTCTGGTCCGGCATTTTTTGTCGTCTCCGGCATTGTTGTTGTC
GCTTCCTTTTGTACCCGCTGGTGGTGTCAGTTGCGCCGCTTGATTGGTGT
TTGTTTCGCCGCTGTTGTCAGTTTACCTTGCCGCTGCTGCTGCCGTTGCC
GCTGCTGCTGTCTGGTGTTGCTGCCGCGGCTGCGATTGCCGTCGGCATTG
CTATATTGATTTGCTATCGCTGTCGATACAGAGTATTGGCGCTTTGGCTT
TCCACTCAGAGCAGAGCTGGGGCCTTTGATGGCTGTTTCGGTAATTCAGC
GGTTGGATTGGTGGGGTGCGGCTTTCTTTTATCATCTGGATCGTCTTTGC
CAGATCGTTGCGAAGGGCCGTGGTTGGGATGGCGCACGCAATGAACCAAT
CGTGTTCTTCCCTCTCCTTCCTTCCCGCCGATCCCCAACGTTCTGGTGGC
CGGCTTGCCGCCATGTCCCTTCCTGATCCGCGTGCTCTGTGGTCCATGGG
CGCATTCCGGCGCGGCCAGCCCACGTTTTTGCGAGCGAGGGCCAGGCGAA
CCTCGCCCGCTACTACCAGATCATCAAGGGGAACCGCGGCCTCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18757:33..1328+

>mRNA_P-wetherbeei_contig18757.1.1 ID=mRNA_P-wetherbeei_contig18757.1.1|Name=mRNA_P-wetherbeei_contig18757.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig18757:33..1328+ (Phaeothamnion wetherbeei SAG_119_79)
GCGTCGCCGCCGCCCGGATGGCCGGGACCGCAAGCGCCGGCCGCGCCGAC
GTTGGCCGGTAAAGGGGGCGGCGACTTAGGCCTCCGAAGACGGCCAGCAG
GGCGCGACGGCGACCCGGCGGAGGCCTCGGCGGCGGTGGCGGCGGCGGAG
CGGCGGCGTAGCTGGCAGGTGCGGCAAGACCTCGAGCTGCAGCAGCATTC
CGGGCGGCGCGTCGACGAGGCGCACGCTGTGGAGCGCATGGTGAACGAGC
TAGGCCAGATGTTCGGGCGCTTCTCGCAGCTCGTGGCGCAGCAGGAGGAG
CTCGTCGTGCACATCGAGGACGACTTTTCTTCTGCCCACGTTTTTGCGAG
CGAGGGCCAGGCGAACCTCGCCCGCTACTACCAGATCATCAAGGGGAACC
GCGGCCTCGTC
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