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Homology
BLAST of mRNA_P-wetherbeei_contig1875.1.1 vs. uniprot
Match: A0A835YQV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQV8_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 1.960e-10 Identity = 61/201 (30.35%), Postives = 98/201 (48.76%), Query Frame = 2
Query: 920 VNLFAPETSSPRLSCWSKWIGCLASPVAIIVIFASWIIVAGSFMCSSVVGDFCVNPDQNTLALVGDNKLVVYYITCRGQPQVLPII--VYEIRVA-MAKILEAIGAALEAALKPGSCMDNADALAP----LSNSLYALWNTMTTVQEAASCEPVNTLYTDITASTVCSQLSKSMEYMLAGSMLLAIALMIVMILYRIIVEQ 1501
V +F T S R C + + CL +I++ A WII S + GDFC +PD NT+ + +N++VV+Y+ C+G + I V ++ VA M KI+ A L C NA A+ L++ YA T QE SC +N LY T C ++ ++ +M+ G +L+ L++ ++ +R I Q
Sbjct: 345 VPVFKGGTDSCRSKCARRLLVCLT----VILLSAMWIIFTASIGSAMAGGDFCQDPDANTIEVTDNNEVVVFYVECQGNSAIFGSIADVQQLLVAAMGKIVPFTDALFGLPLNALVCGGNAAAVGAQVQLLNDLSYAANQLATQAQEDFSCRTINGLYVSAVYQTGCHDINYALGWMMLGLGMLSSGLVLAILTWRFIAAQ 541
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2258 |
| Hectar predicted targeting category | signal anchor |
| Exons | 12 |
| Cds size | 1338 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1683186154.4093404-UTR-P-wetherbeei_contig1875:755..1107 | 1683186154.4093404-UTR-P-wetherbeei_contig1875:755..1107 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig1875 756..1107 + |
| 1683186154.5391493-UTR-P-wetherbeei_contig1875:5706..6274 | 1683186154.5391493-UTR-P-wetherbeei_contig1875:5706..6274 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig1875 5707..6274 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1683186154.4188874-CDS-P-wetherbeei_contig1875:1107..1175 | 1683186154.4188874-CDS-P-wetherbeei_contig1875:1107..1175 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1875 1108..1175 + |
| 1683186154.4271498-CDS-P-wetherbeei_contig1875:1391..1533 | 1683186154.4271498-CDS-P-wetherbeei_contig1875:1391..1533 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1875 1392..1533 + |
| 1683186154.4365883-CDS-P-wetherbeei_contig1875:1700..1822 | 1683186154.4365883-CDS-P-wetherbeei_contig1875:1700..1822 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1875 1701..1822 + |
| 1683186154.445979-CDS-P-wetherbeei_contig1875:2051..2121 | 1683186154.445979-CDS-P-wetherbeei_contig1875:2051..2121 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1875 2052..2121 + |
| 1683186154.4554026-CDS-P-wetherbeei_contig1875:2559..2658 | 1683186154.4554026-CDS-P-wetherbeei_contig1875:2559..2658 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1875 2560..2658 + |
| 1683186154.4646053-CDS-P-wetherbeei_contig1875:2939..3029 | 1683186154.4646053-CDS-P-wetherbeei_contig1875:2939..3029 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1875 2940..3029 + |
| 1683186154.4740763-CDS-P-wetherbeei_contig1875:3426..3567 | 1683186154.4740763-CDS-P-wetherbeei_contig1875:3426..3567 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1875 3427..3567 + |
| 1683186154.4836612-CDS-P-wetherbeei_contig1875:3827..3874 | 1683186154.4836612-CDS-P-wetherbeei_contig1875:3827..3874 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1875 3828..3874 + |
| 1683186154.4932039-CDS-P-wetherbeei_contig1875:4124..4156 | 1683186154.4932039-CDS-P-wetherbeei_contig1875:4124..4156 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1875 4125..4156 + |
| 1683186154.5027206-CDS-P-wetherbeei_contig1875:4467..4640 | 1683186154.5027206-CDS-P-wetherbeei_contig1875:4467..4640 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1875 4468..4640 + |
| 1683186154.5122666-CDS-P-wetherbeei_contig1875:4989..5089 | 1683186154.5122666-CDS-P-wetherbeei_contig1875:4989..5089 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1875 4990..5089 + |
| 1683186154.5217957-CDS-P-wetherbeei_contig1875:5452..5706 | 1683186154.5217957-CDS-P-wetherbeei_contig1875:5452..5706 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1875 5453..5706 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1875.1.1 >prot_P-wetherbeei_contig1875.1.1 ID=prot_P-wetherbeei_contig1875.1.1|Name=mRNA_P-wetherbeei_contig1875.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=446bp
MLLCIPVIYCCVAKMACCCRTLKRSHPKDSRLKWLFLLASLLTVVAAALT ITGFVYADEALVQASDNIGQVESVMTQAADLVESAVTSLTATVDAFSTFT ADATTCIDQNEYDVTLLNDTLVAAVQNYLTEINTELTTNSVEEEVRDLAN EAASIQQSIDDTTTAREVVVYGVFAVNLFVVLVFCFLGWVNLFAPETSSP RLSCWSKWIGCLASPVAIIVIFASWIIVAGSFMCSSVVGDFCVNPDQNTL ALVGDNKLVVYYITCRGQPQVLPIIVYEIRVAMAKILEAIGAALEAALKP GSCMDNADALAPLSNSLYALWNTMTTVQEAASCEPVNTLYTDITASTVCS QLSKSMEYMLAGSMLLAIALMIVMILYRIIVEQRSHVALLAKEREELEEN ESEDNMDHELLHGKGDGKVAPVDGAWDTEDSAPVASAGTVPTRPY* back to topmRNA from alignment at P-wetherbeei_contig1875:756..6274+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig1875.1.1 ID=mRNA_P-wetherbeei_contig1875.1.1|Name=mRNA_P-wetherbeei_contig1875.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=5519bp|location=Sequence derived from alignment at P-wetherbeei_contig1875:756..6274+ (Phaeothamnion wetherbeei SAG_119_79) TGACCCGCTCGTACGTACTTCTTTCCTTCCTTTTCCTCTCATCAGCAAAG
GGAATCGTCGACATCGGCATAATCTTTGTGGTGATCGGTGAGGAGAGAGA
TTCATAGAAGAGAAAGGAGAGCGGAAGCGGTGGAGAGAATAAGCATTCTG
GAGTGTCGGCGGTTCTTGCGTTAACATATAAATAGGTTTGCTATCACGAT
TACTCTCTAAAGGCAGCTTTTTGTTATATCTTGTATGTCTTTGCCCGTGC
TGCAGTGGTGCTGACTTTCGGCGATGGTCTGACCATCCCCATTTTCATGC
GCGCTACTTTGTTTCCTCGTTGTCGGCTGGTGCGGCTCTACCAGGAGCGG
TGATGCTGCTGTGCATCCCCGTCATTTATTGTTGCGTCGCCAAGATGGCC
TGCTGCTGCCGCACCCTCAAGTAAGAAAGTTCTGCATCCGCTTCTCGTAC
GCATTTGTACTTGTACCACATGTGTCTGTATCTCGTTCTTGGAAATCGAC
GTGCCAGGTCGTCAAACGGGTGAGGAAGGAAAGTTCGATTTGGCTGCTGT
CCTCCCTCCGTGAAGGTTTCTTAACTTTCTCATCTTCCATCTCTCCCCCA
TTCTTGCCCATCCGCCGGTGCGGCCGACTCCTGCAGGCGCTCACATCCGA
AGGATTCACGCCTTAAATGGCTCTTCCTTTTGGCAAGCCTCCTCACCGTT
GTGGCGGCTGCGCTGACCATCACCGGCTTCGTCTATGCCGATGAAGCGCT
GGTGCAGGCCAGCGACAACATCGGACAGGTGAGAGGGGAAGGAGGGTGTG
CGATGTGAAGCCAGTTCAACCTCTTCCATGCAATCAATGCACACACATTG
ATGAACTTTTCCCGTTTCACCCTGTCTCACTTTATCTGTTTGTGCGGCGT
GCCTTTCCTGCCTCCCCTCTCCTTCCATTTCCCTGGAGTAAGCAGGTGGA
AAGCGTCATGACGCAGGCGGCAGACCTGGTCGAAAGCGCCGTCACGTCCC
TCACGGCGACAGTTGACGCCTTCTCCACCTTCACCGCCGACGCAACGACA
TGCATCGACCAGAACGAGCAAGTTCGACGTGTTCGGAATCTAACTGGAGC
TGAACTGCTGTTAAAGGAGGGAGGCCTTTGACTCCAAGGATTTTTGGTTG
AGAAGAGCGGCTTTGAGTGTGTTTCTCGGCGCAGCTTGGCGTCTTCCTTG
CAGAATGGAAAAACAAGCGATAGTTCGCCCTTCTGGCTTCGCCCTTGCAG
CATCATTGGTTAACACCTCTTTTGCCTAACCTCGCGATGACGGCAGATAC
GATGTTACGCTGCTCAACGATACGCTGGTGGCGGCCGTTCAGAACTATCT
GACCGAGATCAACACGGTGAGTCGCGTCAATTACGATTTGCCCTGGGCCG
GCTAGTTATACTTCTAGTAAAAGGCCGATGGGAGGGTTTCCCTGTGCCAG
GCAGCTTAAGGCCCTCTCCCTGACAGAGAAGCTCCGATCAGATTGTTGCT
GGTTTCTCGCTCGGGGGGGAGGCAGGAGGTCTCCGGTAGGCAGAACAGTG
CGCAGTTTCCCGGGGCATGTTATCAAAAGTGAGGCATCGTTTTGGGCGCA
AGCTGCCAGCCGGCAGACCTGCAATGCCGAGGCACCAAAATGGGCAGCCA
GCCTTTGCATGTTCGCATCGTGAATATTCTCGCTCTTCCTTGTACCCTCG
GGACGCTCACCTTTGGTTGCTTGGCCTCCTACCCGCCCGTTCCCTCCCTC
TCTGCTCCCCTTCCTCTGTTGGCATGTGTATGGCTCGGCGGTCGATGGGA
ACAGGAGCTGACCACGAATTCGGTGGAGGAGGAGGTCCGCGACTTGGCGA
ACGAGGCGGCAAGCATCCAGCAGTCGATCGACGACACCACGACCGCCCGC
GAGGCGAGTATTACTGTCTGTCGTCACAACGGACAGGCGTTAGAACTTGG
CACAGCAGCTGTTGTAGCAGCAGCGGCACCCGTTGGTTGCAGCAGCTGCG
GTTCCCGTTTCATAGTGAGGCAGATCGCACTCGGTCGGTGAATGTGCTGC
CGTGCGCCAGTCCAAGCTGCTTCGGGATCAATCCGCTTCCGTCTTATCCG
GTGGCCTGCGTTCCTAGCTCTTCCTTCGCTCCACCGCGGGCCGTTGTTAC
CGCCTTTAAAACGCTAGCTTCTCTCGTCTTGCAGGTGGTGGTCTATGGCG
TTTTCGCTGTCAACCTGTTTGTGGTCCTCGTATTCTGCTTTCTCGGCTGG
GTCAACTTGTTCGCGCCAGAAACAGTAAGCCGTTTTGACATTACCATTTC
AATTTAATGTTCCATCTCATCGATTGATTGCTCTGCAAATGTGAAGGTGC
TCGTTTCTTTGCTGAGAGGGCCGTGATGGCGGCAGGCCCCGCATCGCCGC
TTGGAAGCGATACTTCTGGGCAGGCGGCGGGCACCCACGACGTTCGATCT
CGTTATCGTGTTGCTGTTCTTTCCTTGGTAGATCGCATGTTTCTCTCACC
TTCACTTCTGGAGGCTGGGGGTGTTTCCTGCTTTCTCGCTCTTCGGCAGC
GAGGCGAAACCCCAACGGCTAGGGGAAACAAGGCGCACAGTGAATCAAAT
GCAAACGACTTTGCGGCCTTTCCATCTTTCCCATACGTCCTGCCCCATCC
CCCACCCGCCACAATTTGCAGTCGTCGCCGAGGCTTTCGTGCTGGTCGAA
ATGGATCGGCTGCCTCGCCAGTCCCGTCGCCATCATCGTCATCTTCGCCT
CGTGGATCATCGTCGCCGGTTCCTTCATGTGCTCTTCGGTTGTTGGGGAC
TTCTGCGTCAACGTGAGCTCGTTACATAAGAGACTGCCCGGGGAGCGCAT
AGGAACAATTTGACCATTTACATGGTAGGCGCTTTGGGGAAGAAGTGTTT
CGCGCGCTCGTCTGTCTGTTGTCGGTGGTCACTCGCCGTTCTCCTCTCTG
ACCTTCCGGTGCTCGGTCAACGTCGAATGGATGAGCTGACCTTTTTGGGG
TTGATGTGTCGCCCTTGCCGAGGCCCGCCCCTTCTCGTTCCTCCTGGCCC
TCCACCTTCCCCGCATCGGCAGCCAGATCAGAACACACTGGCACTGGTTG
GAGACAACAAGCTGGTCGTGTGAGTTCAATGATTTCTTTTCCTCTTTTTG
GTTGCCTGGTAAAAATCGGTCCAACAGCTTCAGGTGTGGCTGAAATCGAT
CTCGCTGACGCGAAAGCCGTTTCCTCACAAAAACGTTTGAGTAGGTTGTG
TTTGGAGCCGATCATCGACAAAATAAGGATTTCTGGGGCATATTTTGCTG
CTGAGCTATGGAATGGGGTCCAAACTGACCAACAGCCTGTGCCTTCCGCC
TCGCTTCTCCGTTCTGCAGATATTACATTACCTGTCGCGGCCAACCACAA
GGTATTTTCTTTCCCTCACCGCTGCCGTTGTCAGTATTCCCGCCTGCGAT
ATTGACTTGATGATGTCAATGCCGGCCTTCGAGCTTCACTGGCAATCTGG
GCTGTCGACCGCTATCGTGCGCTGCCGCTTCTATCTGCTGTCGTCCCGGC
TGGTGCCCTCGACCGCTCGCCCTAGAACTGACGTGATTCATGTGTTTGCG
ATGGTATATTTTGGGCTGGGAGGCAAATTCTCATGTGTGAATCTTGTATC
TTGCTTTTTCCTTGCTGTTACCGTCGGTTTTCCCGCCGTCTTTGCCCTTT
TCAAATGCACAGTGTTGCCGATCATCGTGTACGAAATCCGGGTCGCCATG
GCGAAGATCCTCGAAGCCATTGGCGCCGCCCTGGAGGCGGCTCTGAAACC
GGGCTCGTGCATGGACAACGCGGACGCTTTGGCGCCGCTGTCGAACTCGT
TGTACGCCCTCTGGAATACCATGACAACTGTGCAGGTGCGTGGTCGTCTC
CCCCCCGGGTCGGGCTTCCTTCCGCTTTCAGGTCATTCTTTTCTTTTGCA
AGATTTTTGTTCCTTTCTGAATGCATGGCTGGGAGTGGTTTCTGGGGTTG
CTCTTTCGTCAAGAGACCCCTTGTGCAACTCGTTGCAGCCGTGGTCACAT
TGCTAACCTTTGGAAAACTGCGAAGAGTAAGTCTGGTTGTGATCACTTTT
ATCACTTTTCTTGAAATCATTTGTTGATTATATCGATGATTTCGTGCAAT
CACTGTGATTTCTACTCGACTATTACTACACACCTTGTTTCCGCTCCTTC
CATTTAATCCTTTCATCCATCTTACCTCAACCAGGAAGCTGCTTCCTGCG
AGCCGGTCAACACATTGTACACAGATATAACAGCCAGTACCGTTTGCTCC
CAGCTCTCCAAGTCCATGGAGTATATGCTTGCAGGTAAGCAGAAAAGAAT
CCTTCTGAGGTGGCAAAACGCTGCTTTGCTTGGTGCAGAGACACATAATA
TACATTCTTTTCAGCTCCGAGAGACTCCATGATGATGACCCGGATGCAGC
GAAGTAATTGCCGACGCTTCCGAATAAAGTCCTTTTCGTTTTGTCTCCCT
GAAAACCACTATGGGCAACGGCTGCGACCGATGGGAACTTCCGCCGCCAT
TCCCGCTTCGTATTTTTATTTACATCTCAGCCCTCAATCGCTAGAATATA
TTATCCGCAGCGCGACATGCCTATTCGCCTTTCTGTGTCTGTTGCTCCTT
TTCGCCCTCGCTGCCGGTCTCCTCTGCCGCTTCCTCTCCGTCCGCAGGAA
GCATGCTGCTGGCCATAGCTCTGATGATTGTCATGATCCTCTACCGCATC
ATCGTGGAGCAGCGATCGCACGTGGCGCTGCTGGCGAAGGAGAGGGAGGA
GCTGGAGGAGAATGAGTCTGAGGACAACATGGACCACGAGCTGCTGCACG
GCAAGGGCGACGGCAAGGTGGCGCCGGTCGATGGCGCGTGGGACACGGAG
GACTCGGCTCCGGTCGCCTCCGCCGGCACAGTGCCAACGAGGCCGTATTA
ACGATAAATGTATGGGGAAGGGGTGACGATAAATGTATGGGGAAGGGAAG
AAGGGCGAGGGCGGCTGACGGCTGGGTACAGCAAGTTCACCAGTTAGGGT
TGGTTTTGCATTACTTAGAGAGCTGCGTCATGCAGCCCCGAGGTTAGTTT
GTGGCGCTGGAGATGGGCTTTAGGGTATTGTGGCAGAGGCGTGGCGCGGG
TAAGACGGAAAACAGAAGCCACATGCTGCCCAAAGGCGAGCCGTCCCGAA
CCTGGTGGCTTGGTCCTATTCCATGTCCATAATACATGAGGGAGCATCAA
TCACCTTCGCTGCCGCCGTGGGGGGCAGGCAGGCCAGAACCGCCAGGTGA
GCGACGCTCGCGGCTGGGCACGCTTGTGTCCTGCGGCTGCGTCGGCAGCG
GCAGCAACGACCACAGCAGCGCTCCAGCAGCAACAGCGCCGCCGCCATGG
CCGGCAGGCCCTTCCGTGCGCCTTGATGCTGCCGCAGCCGTGTCTTGGTC
AGTCAGCCGGACGGCCGGATCGCGCCTTTCAGACAGCCTCGACGGATCCG
TAATGGACCATCACAGTAG back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig1875:756..6274+ >mRNA_P-wetherbeei_contig1875.1.1 ID=mRNA_P-wetherbeei_contig1875.1.1|Name=mRNA_P-wetherbeei_contig1875.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1338bp|location=Sequence derived from alignment at P-wetherbeei_contig1875:756..6274+ (Phaeothamnion wetherbeei SAG_119_79) ATGCTGCTGTGCATCCCCGTCATTTATTGTTGCGTCGCCAAGATGGCCTG CTGCTGCCGCACCCTCAAGCGCTCACATCCGAAGGATTCACGCCTTAAAT GGCTCTTCCTTTTGGCAAGCCTCCTCACCGTTGTGGCGGCTGCGCTGACC ATCACCGGCTTCGTCTATGCCGATGAAGCGCTGGTGCAGGCCAGCGACAA CATCGGACAGGTGGAAAGCGTCATGACGCAGGCGGCAGACCTGGTCGAAA GCGCCGTCACGTCCCTCACGGCGACAGTTGACGCCTTCTCCACCTTCACC GCCGACGCAACGACATGCATCGACCAGAACGAATACGATGTTACGCTGCT CAACGATACGCTGGTGGCGGCCGTTCAGAACTATCTGACCGAGATCAACA CGGAGCTGACCACGAATTCGGTGGAGGAGGAGGTCCGCGACTTGGCGAAC GAGGCGGCAAGCATCCAGCAGTCGATCGACGACACCACGACCGCCCGCGA GGTGGTGGTCTATGGCGTTTTCGCTGTCAACCTGTTTGTGGTCCTCGTAT TCTGCTTTCTCGGCTGGGTCAACTTGTTCGCGCCAGAAACATCGTCGCCG AGGCTTTCGTGCTGGTCGAAATGGATCGGCTGCCTCGCCAGTCCCGTCGC CATCATCGTCATCTTCGCCTCGTGGATCATCGTCGCCGGTTCCTTCATGT GCTCTTCGGTTGTTGGGGACTTCTGCGTCAACCCAGATCAGAACACACTG GCACTGGTTGGAGACAACAAGCTGGTCGTATATTACATTACCTGTCGCGG CCAACCACAAGTGTTGCCGATCATCGTGTACGAAATCCGGGTCGCCATGG CGAAGATCCTCGAAGCCATTGGCGCCGCCCTGGAGGCGGCTCTGAAACCG GGCTCGTGCATGGACAACGCGGACGCTTTGGCGCCGCTGTCGAACTCGTT GTACGCCCTCTGGAATACCATGACAACTGTGCAGGAAGCTGCTTCCTGCG AGCCGGTCAACACATTGTACACAGATATAACAGCCAGTACCGTTTGCTCC CAGCTCTCCAAGTCCATGGAGTATATGCTTGCAGGAAGCATGCTGCTGGC CATAGCTCTGATGATTGTCATGATCCTCTACCGCATCATCGTGGAGCAGC GATCGCACGTGGCGCTGCTGGCGAAGGAGAGGGAGGAGCTGGAGGAGAAT GAGTCTGAGGACAACATGGACCACGAGCTGCTGCACGGCAAGGGCGACGG CAAGGTGGCGCCGGTCGATGGCGCGTGGGACACGGAGGACTCGGCTCCGG TCGCCTCCGCCGGCACAGTGCCAACGAGGCCGTATTAA back to top
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