mRNA_P-wetherbeei_contig18733.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18733.1.1
Unique NamemRNA_P-wetherbeei_contig18733.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18733.1.1 vs. uniprot
Match: A0A7X8XQN0_9BURK (CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6 n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XQN0_9BURK)

HSP 1 Score: 184 bits (467), Expect = 1.530e-52
Identity = 124/316 (39.24%), Postives = 166/316 (52.53%), Query Frame = 1
Query:   19 RNLPILSLVLELEVKDRFRLPPFAGSMFRGCLGWALKEICSPED-------------YSFLFETTA-------GDGDAARPFVLLPPLAARNLEQGDRLQVALRLIGRGCSHVHQFLHAFKLIGLRGLGESQCKYEVVRV-VAEEGERRWVCFD---VNTPASTYIPLPSALGSFVQSIPAD-ITG---LEVDFVTPTRLVYRGQPARAPEFHVLVRTVLRRVSSLLQRELGPDLDVDYQLEIERSQSVEWKPLCLKWEDWERKSNRQGRSITMGGLVGRVRYTGRFEPEILSLLQCARLLHLGKATTFGMGSLEV 882
            R L +L L L+LE +D   LP F+G+ FRG LGW L+    P               YS+LFET A       G  +  RPFVL PP   R +  G+  ++ L L GR   ++  FL+A + +G RGLGE Q ++ +    V   G    + ++     TP    +  PS+      +  AD +TG   LE+ F TPTRLV RGQ    PEFH L+R +LRR+  L +      LDVD++  + R++    +   L W D+ R SNRQ R I MGGLVGR  Y G    E L LL   + LHLGKATTFG+G +EV
Sbjct:   15 RGLALLRLRLDLEARDDLALPSFSGTSFRGLLGWCLQAAACPNRPPCRECRQPDSCAYSYLFETRAKGISEKQGSEEVPRPFVLEPPFGLRTICSGEPFRLGLTLFGRATEYLPHFLYAVEEMGRRGLGERQARFTLKSASVVRPGAPPRLFYEGGNATTPGRA-LEEPSSWDLSEMARQADGLTGARRLEIAFQTPTRLVSRGQLVDEPEFHHLIRALLRRIDLLGRVHGEGPLDVDFRQIVARAEECALEDFELDWFDFRRHSNRQRREIQMGGLVGRAIYAGPVG-EFLPLLMAGQELHLGKATTFGLGRIEV 328          
BLAST of mRNA_P-wetherbeei_contig18733.1.1 vs. uniprot
Match: A0A419ENN6_9BACT (CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6 n=1 Tax=Candidatus Abyssubacteria bacterium SURF_17 TaxID=2093361 RepID=A0A419ENN6_9BACT)

HSP 1 Score: 164 bits (416), Expect = 3.750e-45
Identity = 100/300 (33.33%), Postives = 161/300 (53.67%), Query Frame = 1
Query:   52 LEVKDRFRLPPFAGSMFRGCLGWALKEICSPED--------------YSFLFETTAGDGDAA--------RPFVLLPPLAARNL-EQGDRLQVALRLIGRGCSHVHQFLHAFKLIGLRGLGESQCKYEVVRVVAEEGERRWVCFDVNTPASTYIPLPSALGSFVQSIPADITGLEVDFVTPTRLVYRGQPARAPEFHVLVRTVLRRVSSLLQRELGPDLDVDYQLEIERSQSVEWKPLCLKWEDWERKSNRQGRSITMGGLVGRVRYTGRFEPEILSLLQCARLLHLGKATTFGMGSLEV 882
            ++ K+  RLP + GS  RG  G A K++C  +               Y+++FET+     A          PFV+ PPL  + + ++G+ L+  L LIGR   ++  F+ AFK +G  GLG    KYE++   +++ +     ++  T +S +   PS +   + + P +   LE+ F TPTR++YR Q A  PEFHVL+R +LRRVS++     G   ++D++  +E++Q V+     + W DWER SNRQ   + MGG +G   Y G ++   L LL+   L+H+GK  TFG+G   +
Sbjct:   24 IQAKEELRLPSYKGSTLRGGFGKAFKKVCCSQPKLKCSECALSRACVYTYVFETSPSRQSAMMKLYQAVPHPFVIEPPLRRQGVFQRGESLEFTLTLIGRARDYLPYFVLAFKELGEIGLGTGLGKYELMAAHSDDNQENHRIYE--TLSSRFGECPSPIDIGLGNTPNEDDQLELKFHTPTRIIYREQLAAHPEFHVLMRALLRRVSAIAYFHCGTPPELDFKSIVEQAQEVKIIGEDIGWFDWERYSNRQKTRMKMGGFLGTATYEGPWK-NFLPLLKLGELVHIGKGATFGLGKYSI 320          
BLAST of mRNA_P-wetherbeei_contig18733.1.1 vs. uniprot
Match: A0A497E5M5_9BACT (CRISPR_Cas6 domain-containing protein n=2 Tax=Candidatus Aerophobetes bacterium TaxID=2030807 RepID=A0A497E5M5_9BACT)

HSP 1 Score: 162 bits (409), Expect = 4.860e-44
Identity = 105/323 (32.51%), Postives = 160/323 (49.54%), Query Frame = 1
Query:    1 GMERGWRNLPILSLVLELEVKDRFRLPPFAGSMFRGCLGWALKEI-----------CSPED---YSFLFETTAGDGDA--------ARPFVLLPPLAARN-LEQGDRLQVALRLIGRGCSHVHQFLHAFKLIGLRGLGESQCKYEVVRVVAEEG------ERRWVCFDVNTPASTYIPLPSALGSFVQSIPADITGLEVDFVTPTRLVYRGQPARAPEFHVLVRTVLRRVSSLLQRELGPDLDVDYQLEIERSQSVEWKPLCLKWEDWERKSNRQGRSITMGGLVGRVRYTGRFEPEILSLLQCARLLHLGKATTFGMGSLEV 882
            G   G   L +      L  K+   LPPF GS  RG  G+  ++I           CS +D   YS++FET+     +         RPF+L PPL  +     G+     L L+G+   ++  F+ AF+ +G  GLG  + +YE+VRV + +       E R V ++ +T     +     L     S+      L ++FVTPTR+ YRG     P FH+++R++LRR+SSLL    G  L +DY+  IE +Q ++   + + W DWER S RQ + + +GG VG+V Y G    + L  L+     HLGKA  FG+G  ++
Sbjct:    5 GSVMGLNQLALAKYRFTLRPKETLVLPPFKGSTLRGGFGFVFRKIACITKNRDCSTCSLKDSCVYSYIFETSPPSDSSYLRSYRSIPRPFILEPPLEEKEEYAPGETFSFNLILVGKAIDYLPYFILAFRRLGEMGLGRRKARYELVRVESVKELPNGQVETRTV-YNADTQTVKSVDAQIDLSDLFSSLRFHTRFLTLEFVTPTRIKYRGSYTSRPHFHIILRSLLRRLSSLLYFHCGEKLTLDYRKMIEEAQKIKTLKVEVDWIDWERYSGRQEQRMKLGGFVGQVTYRGDIG-KFLPFLKIGEYTHLGKAVVFGLGKYKI 325          
BLAST of mRNA_P-wetherbeei_contig18733.1.1 vs. uniprot
Match: A0A1J4YLU3_9BACT (CRISPR_Cas6 domain-containing protein n=3 Tax=unclassified Elusimicrobia TaxID=1797919 RepID=A0A1J4YLU3_9BACT)

HSP 1 Score: 159 bits (403), Expect = 3.160e-43
Identity = 99/311 (31.83%), Postives = 160/311 (51.45%), Query Frame = 1
Query:   19 RNLPILSLVLELEVKDRFRLPPFAGSMFRGCLGWALKEICSPED--------------YSFLFETTAGDG--------DAARPFVLLPPLAARN-LEQGDRLQVALRLIGRGCSHVHQFLHAFKLIGLRGLGESQCKYEVVRVVAEEGERRWVCFDVNTPASTYIPLPSALGSFVQSIPADITGLEVDFVTPTRLVYRGQPARAPEFHVLVRTVLRRVSSLLQRELGPDLDVDYQLEIERSQSVEWKPLCLKWEDWERKSNRQGRSITMGGLVGRVRYTGRFEPEILSLLQCARLLHLGKATTFGMGSLEV 882
            ++  I   ++++  +D   LP + GS FRG  G A K++C  +               YSF+FE++            +  RPFV+ PPL  +     GD L+ +  L G+   ++   ++AF  +G  G+G+++ K+++ ++  E G    + +D  T         + L  F++   A I  L + F+TPTR+ Y G     PEFH+++RT+LRR+SSL+    G  L++DY+  I  S++   K   L W DWER S+RQ   + +GG VG V Y G F+P  L LL      H+GK  TFG+G  ++
Sbjct:    8 KSFTISKFLIKIIAEDNLSLPAYKGSTFRGAFGIAFKKVCCIQRQVTCDTCILKEKCAYSFIFESSPQKNAENLSNLDEIPRPFVIEPPLTTKKEFFPGDELEFSFILFGKAIEYLPYMIYAFSQLGKIGIGKNRGKFKLKQITDENGA---IVYDGATETINKTDTTTLL-DFIRF--AGINTLHLSFITPTRIKYEGHYIDKPEFHIIMRTLLRRISSLMYFYCGKQLELDYKNLISLSRNSIIKKSNLNWVDWERYSSRQDIRMKLGGFVGDVVYEGDFKP-FLPLLTLGEYTHIGKNCTFGLGKYKI 311          
BLAST of mRNA_P-wetherbeei_contig18733.1.1 vs. uniprot
Match: A0A3M1LF01_9CHLR (CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6 n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1LF01_9CHLR)

HSP 1 Score: 155 bits (393), Expect = 1.020e-41
Identity = 109/317 (34.38%), Postives = 152/317 (47.95%), Query Frame = 1
Query:   46 LELEVKDRFRLPPFAGSMFRGCLGWALKE-ICSPE-------------DYSFLFETTAGDG--------DAARPFVLLPPLAARN-LEQGDRLQVALRLIGRGCSHVHQFLHAFKLIGLRGLGESQCKYEVVRVVA--------------EEGERRWVCFDVNTPASTYIPLPSALGSFVQSIPADITGLEVDFVTPTRLVYRGQ-PARAPEFHVLVRTVLRRVSSLLQRELGPDLDVDYQLEIERSQSVEWKPLCLKWEDWERKSNRQGRSITMGGLVGRVRYTGRFEPEILSLLQCARLLHLGKATTFGMGSLEV 882
            L LE  +   LPPF GS  RG  G   K+ +CS                Y ++FET    G        +  RPFV+ PPL  R  +  GDRL   L L+GR    +  F+  F+ +G RGLG  + +Y ++   A              E+GE R +   + +PA         + +    +P+D   L + F+TP RL + G+   R P FHVLV+ +L R+SSL     G   + D++  I+R+++V       +WEDWER S RQ R + MGGLVGR  Y G  EP  L LL     +H+GK T FG G   V
Sbjct:   12 LTLEALEPLHLPPFKGSALRGGFGHTFKQLVCSQPWPCAQRCQRGNACPYGYIFETAPPAGSEVLRTFREVPRPFVIEPPLDRRTYIPAGDRLTFGLTLVGRAIPFLPDFIVVFRELGRRGLGRRRGRYRLLAADALLPPEGRTEPIYREEDGEVRSIGLPLGSPA---------IAAHAARLPSD--RLTLHFLTPARLKHEGRWVRRGPPFHVLVKALLGRISSLSYFHCGQRWETDFRGWIDRARAVRLVAAETRWEDWERFSGRQRRRVKMGGLVGRATYEGDLEP-FLPLLTLGERVHVGKGTVFGNGQYRV 316          
BLAST of mRNA_P-wetherbeei_contig18733.1.1 vs. uniprot
Match: A0A3D2KL55_9FIRM (CRISPR_Cas6 domain-containing protein n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=A0A3D2KL55_9FIRM)

HSP 1 Score: 155 bits (393), Expect = 2.420e-41
Identity = 109/300 (36.33%), Postives = 153/300 (51.00%), Query Frame = 1
Query:  109 CLGWALKEICSPEDYSFLFETTAGDG--------DAARPFVLLPPLAARN-LEQGDRLQVALRLIGRGCSHVHQFLHAFKLIGLRGLGESQCKYEVVRV--------------VAEE------GERRWVCFDVNTPA--------STYIPLPSALGSFVQSIPADITGLEVDFVTPTRLVYRGQPARAPEFHVLVRTVLRRVSSLLQRELGPDLDVDYQLEIERSQSVEWKPLCLKWEDWERKSNRQGRSITMGGLVGRVRYTGRFEPEILSLLQCARLLHLGKATTFGMGSLEVYPLLT 897
            C G AL++ C    Y+++FET+  +G        D  RPFV+ PP   R  L  GD ++  L LIGRG S++  F+ AF+ +G  G+G  +  +E+  V              V EE      G R W  FD  T +        S        + ++ + +P D   LEVDF T TRL      AR PEFH+LVR +LRRVSSL     G  LD+DY+  ++ ++ V       +W DW R SNRQ R + +GGLVG+V Y G   P    L+    L+H GK+TTFG+G   V P+++
Sbjct:   68 CGGCALRQACP---YAYVFETSPPEGSEVLRTFKDIPRPFVIEPPEDDRTFLAPGDEMEFGLVLIGRGVSYLPYFVVAFRELGRTGIGPRRAGFELAEVRQVAGPVWAGEAGGVGEEREQGKQGARSWTVFDGTTDSGEVRVAGVSERCVGAKEIKAWAEELPRD--RLEVDFRTMTRLKAEDSFARRPEFHLLVRALLRRVSSLAYFHHGVSLDLDYRGLVQAARQVNVLRDRTRWVDWARYSNRQDRRMNLGGLVGKVVYEGDLGP-FRELIVVGSLVHAGKSTTFGLGRYSVAPIIS 361          
BLAST of mRNA_P-wetherbeei_contig18733.1.1 vs. uniprot
Match: A0A1V5VM29_9BACT (CRISPR_Cas6 domain-containing protein n=1 Tax=Elusimicrobia bacterium ADurb.Bin231 TaxID=1852873 RepID=A0A1V5VM29_9BACT)

HSP 1 Score: 152 bits (384), Expect = 1.840e-40
Identity = 96/303 (31.68%), Postives = 155/303 (51.16%), Query Frame = 1
Query:   43 VLELEVKDRFRLPPFAGSMFRGCLGWALKEICSPED--------------YSFLFETTA-GDG-------DAARPFVLLPPLAARN-LEQGDRLQVALRLIGRGCSHVHQFLHAFKLIGLRGLGESQCKYEVVRVVAEEGERRWVCFDVNTPASTYIPLPSALGSFVQSIPADITGLEVDFVTPTRLVYRGQPARAPEFHVLVRTVLRRVSSLLQRELGPDLDVDYQLEIERSQSVEWKPLCLKWEDWERKSNRQGRSITMGGLVGRVRYTGRFEPEILSLLQCARLLHLGKATTFGMGSLEV 882
            V+ +  ++   LP + GS FRG  G A K+IC  +               YSF+FE++   D        +  RPFV+ PPLA       GD L+  L L G+    +   ++ F  +G  G+G+ + K+E+  V+   G+   V +D  T         + L    +S       L+++F+TPTR+ + G     PEFH+L RT+LRR+S+L+    G  LD++++  I +S+ ++ K + +KW DWER S+RQ   +++GG VG   Y+G   P  +  L+     H+GK  TFG+G  E+
Sbjct:   18 VIVITAQEDIFLPAYKGSTFRGGFGNAFKKICCIQRHSECVKCILRDKCAYSFIFESSPLSDSQKLKNLEEIPRPFVIEPPLAKETKYHAGDILKFGLILFGKAVEFLPYMIYTFAELGKIGIGKGRGKFELKEVLDITGK---VIYDSQTGVLKNTIKEAILSDSEES--CLYNSLKINFLTPTRIKFNGHYTSNPEFHILFRTLLRRISNLMYFYCGKSLDINFKETISQSERIKIKNINVKWHDWERYSSRQNTRMSLGGFVGEAEYSGDIMP-FMPFLRLGEYTHIGKNCTFGLGKYEI 314          
BLAST of mRNA_P-wetherbeei_contig18733.1.1 vs. uniprot
Match: A0A7C2VR48_9DELT (CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6 n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C2VR48_9DELT)

HSP 1 Score: 149 bits (377), Expect = 2.030e-39
Identity = 107/314 (34.08%), Postives = 155/314 (49.36%), Query Frame = 1
Query:   22 NLPILSLVLELEVKDRFRLPPFAGSMFRGCLGWA-----------------LKEICSPEDYSFLFETTAGDGD--------AARPFVLLPPLA-ARNLEQGDRLQVALRLIGRGCSHVHQFLHAFKLIGLRGLGESQCKYEVVRVVAEEGERRWVCFDVNTPASTYIPLPSALGSFVQSIP-ADITGLEVDFVTPTRLVYRGQPARAPEFHVLVRTVLRRVSSLLQRELGPDLDVDYQLEIERSQSVEWKPLCLKWEDWERKSNRQGRSITMGGLVGRVRYTGRFEPEILSLLQCARLLHLGKATTFGMGSLEV 882
            +  IL L L L+     +LP + GS FRG  G A                 LKE C    YS++FET              A  PFVL+PPL   RN   G++ +V L LI RG  ++  FL AF  +G +G+G  + K+E+V      GE  ++   V +PAS         G  +   P A++T   + F+TP R+ YR +     EFHVL+R++LRR+S L     G +L  D++  I ++Q+V      L W DW R S+RQ   +  GGL+G + + G F P     L+    +H GK T+FG+G  E+
Sbjct:   15 SFSILPLSLTLKAVTAIKLPAYKGSTFRGAFGAAFKRATCVSKAKSCSECILKERCP---YSYVFETPVPITSDRMRKYPYAPHPFVLVPPLEDRRNYSPGEQFEVFLTLICRGIDYLPYFLFAFGEMGKKGIGRGRGKFELVEARTTAGEAVYMDGTVRSPASV------RWGDIIDGPPPAELT---LKFLTPLRVRYRERLCSDLEFHVLIRSLLRRISLLSFFHCGQELKADFRGFITQAQNVRTVRNHLVWHDWLRYSHRQRAKLKFGGLMGEITFKGDFRP-FWPFLRLGEWIHAGKGTSFGLGRYEI 315          
BLAST of mRNA_P-wetherbeei_contig18733.1.1 vs. uniprot
Match: A0A2N2A9M8_9FIRM (CRISPR_Cas6 domain-containing protein n=1 Tax=Firmicutes bacterium HGW-Firmicutes-8 TaxID=2013789 RepID=A0A2N2A9M8_9FIRM)

HSP 1 Score: 146 bits (369), Expect = 3.280e-38
Identity = 100/318 (31.45%), Postives = 160/318 (50.31%), Query Frame = 1
Query:   19 RNLPILSLVLELEVKDR-FRLPPFAGSMFRGCLGWALKEI-CSPED-------------YSFLFETTAGDGDAA--------RPFVLLPPLAARN-LEQGDRLQVALRLIGRGCSHVHQFLHAFKLIGLRGLGESQCKYEVVRVVAEEGERRWVCFDVNTPASTYIPLPSAL-GSFVQSI-----PADITGLEVDFVTPTRLVYRGQPARAPEFHVLVRTVLRRVSSLLQRELGPDLDVDYQLEIERSQSVEWKPLCLKWEDWERKSNRQGRSITMGGLVGRVRYTGRFEPEILSLLQCARLLHLGKATTFGMGSLEV 882
            ++L +    ++++  +R  RLPP+ GS FRG  G   + + CS +              Y+++FET+   G  A        RPFV+ PP   R     G+ L   L L G+  +++  F+  F+ +G  G+G+ +  YE+V++ A  G          +   T I    A+ G  + +      P  +T   VD++T TRL Y       P+FH+L+R +LRR+SSL+      +LD+DY+  IE++  V+      +W DWER SNRQ   + +GG++G V Y      + L LL+   L+H+GKA TFGMG   +
Sbjct:    6 KHLRVAKYRIDIKAGERGLRLPPYKGSTFRGGFGSTFRRVVCSVKTGECKGCLLEVNCPYAYIFETSPPPGSEALRNYENIPRPFVIEPPADTRTGYPPGETLSFGLVLFGKAIAYLPYFIVVFRELGSAGIGKGRNPYELVKITACNGLTGAEQVIYRSEEQTVISANMAVTGEDIMAACCAIPPGPVT---VDYLTMTRLKYNKSFVSRPDFHILIRNLLRRLSSLMYFHHDLELDIDYKGIIEKASQVKIISDRTRWVDWERYSNRQDTRMNLGGVMGPVTYND-VNADFLLLLKLGELIHVGKAATFGMGKYRI 319          
BLAST of mRNA_P-wetherbeei_contig18733.1.1 vs. uniprot
Match: A0A847QKG6_9FIRM (CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6 n=1 Tax=Veillonellaceae bacterium TaxID=2049049 RepID=A0A847QKG6_9FIRM)

HSP 1 Score: 145 bits (365), Expect = 1.160e-37
Identity = 98/295 (33.22%), Postives = 149/295 (50.51%), Query Frame = 1
Query:   76 LPPFAGSMFRGCLGWALKEIC--SPED------------YSFLFETTAGDGDAA--------RPFVLLPPLAAR-NLEQGDRLQVALRLIGRGCSHVHQFLHAFKLIGLRGLGESQCKYEVVRVVAEEGERRWVCFDVNTPASTYIPLPSALGSFVQSIPADITG--LEVDFVTPTRLVYRGQPARAPEFHVLVRTVLRRVSSLLQ-RELGPDLDVDYQLEIERSQSVEWKPLCLKWEDWERKSNRQGRSITMGGLVGRVRYTGRFEPEILSLLQCARLLHLGKATTFGMGSLEV 882
            LP + GS  RG  G   + IC   P++            Y+ +FE     G           RPFV+ PPL  + +   G+RL   L LIG+   ++  F+ AFK +G  G+G  +  Y++V + A    R  V    NT   T  P+ S   + +     + T   L++DF+T TRL +         FHVL+R +LRR+S+L    + GP LD+DY++ I++++ ++     L+  DWER S RQ   + MGGLVG V Y G  EP  + L++   ++H+GK   FG+G  EV
Sbjct:   23 LPRYKGSTLRGGFGHVFRRICCSQPKEICSVCLLAQACPYALIFEPGPSPGSEVLKNYSNIPRPFVIEPPLDDKMHYAPGERLSFNLILIGQAVQYLPYFILAFKELGKVGIGRGRLPYKLVDIAAAINNRETVSI-YNTSTGTITPVDSEQTAAILDESTNKTDGVLKLDFLTMTRLKFENTLTTDIPFHVLIRNLLRRISTLYYFYQDGPKLDIDYKMLIDKAEEIKIISSELRLVDWERYSQRQNTHVNMGGLVGSVVYEGNVEP-FMPLIKLGEVIHVGKGCVFGLGKYEV 315          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18733.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X8XQN0_9BURK1.530e-5239.24CRISPR system precrRNA processing endoribonuclease... [more]
A0A419ENN6_9BACT3.750e-4533.33CRISPR system precrRNA processing endoribonuclease... [more]
A0A497E5M5_9BACT4.860e-4432.51CRISPR_Cas6 domain-containing protein n=2 Tax=Cand... [more]
A0A1J4YLU3_9BACT3.160e-4331.83CRISPR_Cas6 domain-containing protein n=3 Tax=uncl... [more]
A0A3M1LF01_9CHLR1.020e-4134.38CRISPR system precrRNA processing endoribonuclease... [more]
A0A3D2KL55_9FIRM2.420e-4136.33CRISPR_Cas6 domain-containing protein n=1 Tax=Clos... [more]
A0A1V5VM29_9BACT1.840e-4031.68CRISPR_Cas6 domain-containing protein n=1 Tax=Elus... [more]
A0A7C2VR48_9DELT2.030e-3934.08CRISPR system precrRNA processing endoribonuclease... [more]
A0A2N2A9M8_9FIRM3.280e-3831.45CRISPR_Cas6 domain-containing protein n=1 Tax=Firm... [more]
A0A847QKG6_9FIRM1.160e-3733.22CRISPR system precrRNA processing endoribonuclease... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18733contigP-wetherbeei_contig18733:138..1034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog760568.Desku_2979
PFAMsCRISPR_Cas6
Model size897
Max annot lvl186801|Clostridia
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.46e-37
EggNOG OGsCOG5551@1|root,COG5551@2|Bacteria,1UZCQ@1239|Firmicutes,24D4V@186801|Clostridia,263PI@186807|Peptococcaceae
DescriptionCRISPR-associated endoribonuclease Cas6
Cds size894
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186153.9274757-CDS-P-wetherbeei_contig18733:137..10311683186153.9274757-CDS-P-wetherbeei_contig18733:137..1031Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18733 138..1031 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186153.9378102-UTR-P-wetherbeei_contig18733:1031..10341683186153.9378102-UTR-P-wetherbeei_contig18733:1031..1034Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18733 1032..1034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18733.1.1prot_P-wetherbeei_contig18733.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18733 138..1031 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18733.1.1

>prot_P-wetherbeei_contig18733.1.1 ID=prot_P-wetherbeei_contig18733.1.1|Name=mRNA_P-wetherbeei_contig18733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=298bp
MERGWRNLPILSLVLELEVKDRFRLPPFAGSMFRGCLGWALKEICSPEDY
SFLFETTAGDGDAARPFVLLPPLAARNLEQGDRLQVALRLIGRGCSHVHQ
FLHAFKLIGLRGLGESQCKYEVVRVVAEEGERRWVCFDVNTPASTYIPLP
SALGSFVQSIPADITGLEVDFVTPTRLVYRGQPARAPEFHVLVRTVLRRV
SSLLQRELGPDLDVDYQLEIERSQSVEWKPLCLKWEDWERKSNRQGRSIT
MGGLVGRVRYTGRFEPEILSLLQCARLLHLGKATTFGMGSLEVYPLLT
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mRNA from alignment at P-wetherbeei_contig18733:138..1034-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18733.1.1 ID=mRNA_P-wetherbeei_contig18733.1.1|Name=mRNA_P-wetherbeei_contig18733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=897bp|location=Sequence derived from alignment at P-wetherbeei_contig18733:138..1034- (Phaeothamnion wetherbeei SAG_119_79)
GGAATGGAACGAGGATGGCGTAACCTGCCTATTCTTTCTCTGGTCTTGGA GCTTGAGGTGAAAGATCGCTTTCGCCTTCCTCCGTTTGCCGGCTCCATGT TTCGGGGTTGCCTGGGTTGGGCGTTGAAAGAGATTTGCTCTCCGGAGGAC TACAGCTTCCTTTTTGAAACGACCGCTGGAGACGGAGATGCAGCGCGCCC CTTCGTCCTGCTCCCTCCCCTTGCTGCGAGGAATTTAGAGCAGGGGGACC GATTGCAGGTCGCTCTGCGCCTAATTGGGCGAGGTTGCTCTCACGTCCAC CAATTCTTGCACGCTTTTAAGCTCATTGGTTTGCGGGGGCTCGGCGAAAG TCAATGCAAGTATGAAGTTGTCCGCGTTGTCGCAGAAGAAGGCGAGCGGC GATGGGTTTGCTTCGACGTGAACACTCCTGCATCGACCTACATTCCCTTG CCTTCAGCTCTTGGGAGTTTCGTTCAATCCATTCCCGCTGATATCACGGG GCTGGAGGTTGATTTTGTTACACCAACCCGGTTGGTTTATCGCGGACAGC CTGCCCGTGCACCTGAGTTCCACGTTCTTGTGCGAACCGTGCTTCGCAGG GTTTCGAGCCTTTTACAGCGCGAGCTTGGCCCTGACTTGGATGTCGACTA TCAACTTGAGATCGAGCGCTCTCAATCGGTCGAATGGAAGCCGCTGTGTC TAAAATGGGAGGATTGGGAGCGTAAATCCAACCGCCAGGGCCGCTCTATT ACGATGGGTGGCCTGGTGGGTCGAGTTCGCTACACAGGACGGTTCGAGCC TGAAATATTGTCCCTCTTGCAATGCGCCCGGCTACTACACCTGGGTAAGG CTACGACCTTTGGGATGGGCTCTCTTGAAGTTTATCCTCTGCTGACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18733:138..1034-

>mRNA_P-wetherbeei_contig18733.1.1 ID=mRNA_P-wetherbeei_contig18733.1.1|Name=mRNA_P-wetherbeei_contig18733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=894bp|location=Sequence derived from alignment at P-wetherbeei_contig18733:138..1034- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAACGAGGATGGCGTAACCTGCCTATTCTTTCTCTGGTCTTGGAGCT
TGAGGTGAAAGATCGCTTTCGCCTTCCTCCGTTTGCCGGCTCCATGTTTC
GGGGTTGCCTGGGTTGGGCGTTGAAAGAGATTTGCTCTCCGGAGGACTAC
AGCTTCCTTTTTGAAACGACCGCTGGAGACGGAGATGCAGCGCGCCCCTT
CGTCCTGCTCCCTCCCCTTGCTGCGAGGAATTTAGAGCAGGGGGACCGAT
TGCAGGTCGCTCTGCGCCTAATTGGGCGAGGTTGCTCTCACGTCCACCAA
TTCTTGCACGCTTTTAAGCTCATTGGTTTGCGGGGGCTCGGCGAAAGTCA
ATGCAAGTATGAAGTTGTCCGCGTTGTCGCAGAAGAAGGCGAGCGGCGAT
GGGTTTGCTTCGACGTGAACACTCCTGCATCGACCTACATTCCCTTGCCT
TCAGCTCTTGGGAGTTTCGTTCAATCCATTCCCGCTGATATCACGGGGCT
GGAGGTTGATTTTGTTACACCAACCCGGTTGGTTTATCGCGGACAGCCTG
CCCGTGCACCTGAGTTCCACGTTCTTGTGCGAACCGTGCTTCGCAGGGTT
TCGAGCCTTTTACAGCGCGAGCTTGGCCCTGACTTGGATGTCGACTATCA
ACTTGAGATCGAGCGCTCTCAATCGGTCGAATGGAAGCCGCTGTGTCTAA
AATGGGAGGATTGGGAGCGTAAATCCAACCGCCAGGGCCGCTCTATTACG
ATGGGTGGCCTGGTGGGTCGAGTTCGCTACACAGGACGGTTCGAGCCTGA
AATATTGTCCCTCTTGCAATGCGCCCGGCTACTACACCTGGGTAAGGCTA
CGACCTTTGGGATGGGCTCTCTTGAAGTTTATCCTCTGCTGACG
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