mRNA_P-wetherbeei_contig18703.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18703.2.1
Unique NamemRNA_P-wetherbeei_contig18703.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18703.2.1 vs. uniprot
Match: A0A7V3CG39_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V3CG39_9DELT)

HSP 1 Score: 78.2 bits (191), Expect = 4.490e-15
Identity = 43/125 (34.40%), Postives = 73/125 (58.40%), Query Frame = 1 
Query:   88 SSPDAAAKGFFSAVATKSYANAWHLMSAQSQNWLIGIIAKQAQVEPAQIKVLFDVNDPKLQDGFWEEFRKSSKSEDLVKLGTFETVEATETDAKVNMTINGST-KTLLMKNEGGWKLGYQETFLP 459
            ++P  A KGFF AV+ + Y  AW  ++  SQ+  + ++A+  +++PA+++ LF  N   ++ GFW  FR SSK + +    +++ +      A+V MT      K+  +K +G WK+GY ETFLP
Sbjct:   58 ATPVDAVKGFFDAVSKEEYDVAWASLTKTSQDKFVTMVAEDEKLDPAKVRDLFVQNQMSIRIGFWRSFRNSSKLDIVAPGASYKVLNEGPELAEVEMTSGDLVLKSKALKEDGQWKMGYVETFLP 182
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BLAST of mRNA_P-wetherbeei_contig18703.2.1 vs. uniprot
Match: A0A7V3CDF9_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V3CDF9_9DELT)

HSP 1 Score: 74.3 bits (181), Expect = 8.660e-13
Identity = 42/129 (32.56%), Postives = 71/129 (55.04%), Query Frame = 1 
Query:   82 AQSSPDAAAKGFFSAVATKSYANAWHLMSAQSQNWLIGIIAKQAQVEPAQIKVLFDVNDPKLQDGFWEEFRKSSKSEDLVKLGTFETVEATETDAKVNMTINGSTKTLLMK---NEGGWKLGYQETFLP 459
            A+++P   AK F+ A+A + +  AW  ++ +SQ+  I ++AK  +++P +++ LF+ N   ++ GFW  FR SSK +       ++ +     +A+V M        L+ K     G WKLGY ETFLP
Sbjct:  194 ARATPIQGAKSFYDAIAKEQFDVAWSSLTKKSQDKFISMVAKDEKMDPTKVRDLFEKNQMPIRLGFWRSFRYSSKIDTYTVNANYKVLREDGLEAEVEMVAGDMI--LISKVFFENGQWKLGYTETFLP 320
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18703.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7V3CG39_9DELT4.490e-1534.40Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A7V3CDF9_9DELT8.660e-1332.56Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18703contigP-wetherbeei_contig18703:390..866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size477
Hectar predicted targeting categorysignal peptide
Exons1
Cds size462
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186153.5034223-UTR-P-wetherbeei_contig18703:389..4041683186153.5034223-UTR-P-wetherbeei_contig18703:389..404Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18703 390..404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186153.5126371-CDS-P-wetherbeei_contig18703:404..8661683186153.5126371-CDS-P-wetherbeei_contig18703:404..866Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18703 405..866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18703.2.1prot_P-wetherbeei_contig18703.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18703 405..866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18703.2.1

>prot_P-wetherbeei_contig18703.2.1 ID=prot_P-wetherbeei_contig18703.2.1|Name=mRNA_P-wetherbeei_contig18703.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
MRLISRILAALLLLLLCALGAFAQSSPDAAAKGFFSAVATKSYANAWHLM
SAQSQNWLIGIIAKQAQVEPAQIKVLFDVNDPKLQDGFWEEFRKSSKSED
LVKLGTFETVEATETDAKVNMTINGSTKTLLMKNEGGWKLGYQETFLPSG
QLP*
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mRNA from alignment at P-wetherbeei_contig18703:390..866+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18703.2.1 ID=mRNA_P-wetherbeei_contig18703.2.1|Name=mRNA_P-wetherbeei_contig18703.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig18703:390..866+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCGGAGGTATCTTATGAGGCTCATTTCTCGGATTCTGGCGGCTCTATT
GCTGCTGCTCCTGTGCGCTCTGGGCGCCTTCGCGCAGAGCTCACCGGACG
CAGCCGCCAAAGGTTTTTTCAGTGCTGTAGCTACCAAGAGCTATGCAAAC
GCGTGGCACCTGATGTCGGCGCAAAGCCAGAACTGGCTGATTGGAATCAT
CGCCAAACAGGCCCAGGTCGAGCCCGCTCAGATTAAGGTCCTTTTCGACG
TCAACGACCCCAAGCTGCAAGACGGGTTCTGGGAAGAATTCCGTAAATCG
TCCAAGAGCGAAGACCTTGTCAAACTGGGCACTTTCGAAACGGTCGAGGC
AACCGAGACGGATGCCAAGGTCAATATGACGATCAACGGGAGCACTAAGA
CTCTTTTGATGAAGAATGAAGGCGGCTGGAAACTCGGATACCAGGAAACC
TTTCTCCCCTCCGGACAGCTTCCGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18703:390..866+

>mRNA_P-wetherbeei_contig18703.2.1 ID=mRNA_P-wetherbeei_contig18703.2.1|Name=mRNA_P-wetherbeei_contig18703.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig18703:390..866+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGCTCATTTCTCGGATTCTGGCGGCTCTATTGCTGCTGCTCCTGTG
CGCTCTGGGCGCCTTCGCGCAGAGCTCACCGGACGCAGCCGCCAAAGGTT
TTTTCAGTGCTGTAGCTACCAAGAGCTATGCAAACGCGTGGCACCTGATG
TCGGCGCAAAGCCAGAACTGGCTGATTGGAATCATCGCCAAACAGGCCCA
GGTCGAGCCCGCTCAGATTAAGGTCCTTTTCGACGTCAACGACCCCAAGC
TGCAAGACGGGTTCTGGGAAGAATTCCGTAAATCGTCCAAGAGCGAAGAC
CTTGTCAAACTGGGCACTTTCGAAACGGTCGAGGCAACCGAGACGGATGC
CAAGGTCAATATGACGATCAACGGGAGCACTAAGACTCTTTTGATGAAGA
ATGAAGGCGGCTGGAAACTCGGATACCAGGAAACCTTTCTCCCCTCCGGA
CAGCTTCCGTAG
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